mRNA_E-fasciculatus_F_contig1025.230.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1025.230.1
Unique NamemRNA_E-fasciculatus_F_contig1025.230.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1025.230.1 vs. uniprot
Match: D8LSL4_ECTSI (Ion channel nompc n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL4_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.900e-49
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 1 
Query:    1 VEGDTDSIDLLLGAAPSTVNRATKDG-TPLCVACEFGQAQAVLCLLPTGATSKGIPCPLMTATANGHESVIRVLLGTKEQIEAFGGVEKIPSALYHAVQKLASCAILDVLLS 333
            +EGDT+SI LLL AAPST+NRATK G TPLCVACEFGQAQ V  LL   ATSK +PCPL TATANGHESV+RVLLGTKE+I+AFGGV+K+PSAL HAVQK  SCAIL VLLS
Sbjct:    1 MEGDTESITLLLEAAPSTMNRATKGGMTPLCVACEFGQAQVVSRLLSAEATSKWMPCPLATATANGHESVVRVLLGTKERIKAFGGVDKLPSALCHAVQKHNSCAILLVLLS 112
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1025.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSL4_ECTSI2.900e-4977.68Ion channel nompc n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1025contigE-fasciculatus_F_contig1025:16409..16741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue4.8e-09
Seed eggNOG ortholog2880.D8LSK8
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_002070.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.0805776-CDS-E-fasciculatus_F_contig1025:16408..167411622927527.0805776-CDS-E-fasciculatus_F_contig1025:16408..16741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 16409..16741 -
1695995579.0725417-CDS-E-fasciculatus_F_contig1025:16408..167411695995579.0725417-CDS-E-fasciculatus_F_contig1025:16408..16741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 16409..16741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1025.230.1prot_E-fasciculatus_F_contig1025.230.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1025 16409..16741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1025.230.1

>prot_E-fasciculatus_F_contig1025.230.1 ID=prot_E-fasciculatus_F_contig1025.230.1|Name=mRNA_E-fasciculatus_F_contig1025.230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
VEGDTDSIDLLLGAAPSTVNRATKDGTPLCVACEFGQAQAVLCLLPTGAT
SKGIPCPLMTATANGHESVIRVLLGTKEQIEAFGGVEKIPSALYHAVQKL
ASCAILDVLLS
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mRNA from alignment at E-fasciculatus_F_contig1025:16409..16741-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1025.230.1 ID=mRNA_E-fasciculatus_F_contig1025.230.1|Name=mRNA_E-fasciculatus_F_contig1025.230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:16409..16741- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGAAGGAGATACCGACTCGATCGACTTGCTGCTCGGAGCGGCGCCATC
GACCGTGAATCGTGCCACGAAAGACGGTACGCCCCTGTGCGTGGCATGCG
AGTTCGGGCAGGCGCAGGCTGTACTCTGCCTGCTGCCTACCGGGGCAACC
AGCAAAGGGATACCGTGCCCGCTGATGACCGCCACTGCCAACGGGCATGA
ATCTGTGATCCGCGTGCTGCTGGGTACCAAGGAACAGATTGAGGCGTTCG
GAGGCGTGGAAAAGATTCCCTCGGCTTTGTACCACGCTGTTCAGAAACTT
GCTTCATGCGCAATCCTTGACGTTCTGCTGTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1025:16409..16741-

>mRNA_E-fasciculatus_F_contig1025.230.1 ID=mRNA_E-fasciculatus_F_contig1025.230.1|Name=mRNA_E-fasciculatus_F_contig1025.230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:16409..16741- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGAAGGAGATACCGACTCGATCGACTTGCTGCTCGGAGCGGCGCCATC
GACCGTGAATCGTGCCACGAAAGACGGTACGCCCCTGTGCGTGGCATGCG
AGTTCGGGCAGGCGCAGGCTGTACTCTGCCTGCTGCCTACCGGGGCAACC
AGCAAAGGGATACCGTGCCCGCTGATGACCGCCACTGCCAACGGGCATGA
ATCTGTGATCCGCGTGCTGCTGGGTACCAAGGAACAGATTGAGGCGTTCG
GAGGCGTGGAAAAGATTCCCTCGGCTTTGTACCACGCTGTTCAGAAACTT
GCTTCATGCGCAATCCTTGACGTTCTGCTGTCGGTGGAAGGAGATACCGA
CTCGATCGACTTGCTGCTCGGAGCGGCGCCATCGACCGTGAATCGTGCCA
CGAAAGACGGTACGCCCCTGTGCGTGGCATGCGAGTTCGGGCAGGCGCAG
GCTGTACTCTGCCTGCTGCCTACCGGGGCAACCAGCAAAGGGATACCGTG
CCCGCTGATGACCGCCACTGCCAACGGGCATGAATCTGTGATCCGCGTGC
TGCTGGGTACCAAGGAACAGATTGAGGCGTTCGGAGGCGTGGAAAAGATT
CCCTCGGCTTTGTACCACGCTGTTCAGAAACTTGCTTCATGCGCAATCCT
TGACGTTCTGCTGTCG
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