mRNA_E-fasciculatus_F_contig13033.2299.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13033.2299.1
Unique NamemRNA_E-fasciculatus_F_contig13033.2299.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13033.2299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13033contigE-fasciculatus_F_contig13033:6..2004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927809.1925511-CDS-E-fasciculatus_F_contig13033:6..2331622927809.1925511-CDS-E-fasciculatus_F_contig13033:6..233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13033 7..233 -
1695995703.5907066-CDS-E-fasciculatus_F_contig13033:6..2331695995703.5907066-CDS-E-fasciculatus_F_contig13033:6..233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13033 7..233 -
1622927809.2032633-CDS-E-fasciculatus_F_contig13033:1934..20041622927809.2032633-CDS-E-fasciculatus_F_contig13033:1934..2004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13033 1935..2004 -
1695995703.6019533-CDS-E-fasciculatus_F_contig13033:1934..20041695995703.6019533-CDS-E-fasciculatus_F_contig13033:1934..2004Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13033 1935..2004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13033.2299.1prot_E-fasciculatus_F_contig13033.2299.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13033 7..2004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13033.2299.1

>prot_E-fasciculatus_F_contig13033.2299.1 ID=prot_E-fasciculatus_F_contig13033.2299.1|Name=mRNA_E-fasciculatus_F_contig13033.2299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=99bp
QQQAGSAGTQASIFCCRSWLRSRGCLYAPKRRRCVRTQLQPARCSVMAPT
APSASRRVPGCVKRRDKTRSSAAMGSGSWSGTTWSSLALLAVVGGGGAG
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mRNA from alignment at E-fasciculatus_F_contig13033:6..2004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13033.2299.1 ID=mRNA_E-fasciculatus_F_contig13033.2299.1|Name=mRNA_E-fasciculatus_F_contig13033.2299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1999bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13033:6..2004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGGCAGGCTCGGCAGGAACACAAGCTTCTATATTTTGCTGTCG
GTCGTGGCTGCGCTCCCGAGGTACGTCTGACTTTGCTTCGGTTCGCCCTT
TGGCTTCCGATCCCGCTGTCTTCCTTTGGGTGTGTGCGTGGGTGTTCGCT
CTCTCTCTCTCTCCCCCGACCAGTGTTGGCTGCTGTTCTCTCCGTGTGTT
AGTTTGTGGATCTCTCTGCCCCTTTTTGGGGCGCACGATTATGCGGAGGG
GATGGGCCAGCGGATGAATTGGCGAGCAAGGACGGTTGTGTTGTGGCCGA
GAGAGACGTAGAAAGCCTTGTGTTGTTGCGTTGGTTTTCGACCCCTCACA
CCCGCCCCGCTCTCCATGGCCACCAGCTCACTCGAAGGTTTGAAACTCTC
GTTCGCACGCGGGACACGGGGGGAGCGTCCAGACTCCCCGCTTTCTTCTC
TTGTGCGATTCAGACATTCAGACATTCAGACGGAACAAAACCGGTGAACA
GCGGTCACATACCATCTGTAGTCACACACAATCAATTCCAACACAGCAGG
GCAGCGAGCGAGCAGCGGGGCGTAAGACAAGAAGGCAGGTAGGCAGGTAC
CTATGACTGATGTGCTGCTATCTACTGCCAAGGTTCTTGTCAGAAAGCAA
AGCCATCGTTGACATCCTCACGCAGCAGCAGGCGCTAGAAGCGCGCGATC
ACTTTTGCGTCCGCAGTTGTCTCCTCTTCACAACTGCAGCCCTTTCTTTC
TTCCCCGAGAATATGACTGGTTTTTGTGTGCCGTCTCTGGGGCGCGCACG
GGATGAACTTAAAAAAATCCAAAAAACAACACTTCGCCCTCCAAAAAGGC
GTGCCCGGTACAGAGAATGAATGCATGCATGCTACTCGGATTGGTTAACT
ACTACTGCTGTGCCGTACGTAGTATGATTCCTATATGTTACACACCTGGG
AGCGGGCATAACCCATATGTGATTCATCATGCATGCATACGCCTGGAGAG
TTGTGAAAGTCATGATTTCCATGGGCTGTGCCCTGCGCGTGTCTACGACG
GAGATTGTGATATGTTATAGTATGTCGTATGGTACGAGGGCAGTAGTGTG
CGTACCCCTCTCAGCTTACATGCACAAAGGCATACGTCGACCATGTGAGC
ATTGTTGGCACCCCGGCATTTACTGGTAACTGCTGTACACTAAGCGCAGC
ATCATGTAGATTACAAGAATTCAGGCTTCTTTGCTGCTTTTGTACTGCTC
TACTACCATGGTATGCATGTATGCGCTACAAGCTGTAGACTAGATGCCTG
TTCTCGGTCGAGAGGGTGAGCATGTTGGACACCAACAACAAAAAAAACTC
CGGAGTAAAACCTTGTAAGTAATTTAGTCTTCCACCAGCTACATATGCAT
ACCGCACACCGCAGCAGTATGTATGCTACATCCCGTTGCGTTCAAGACCA
ACGCGAGGAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCAGGCAGCATAC
AGTACTGCTGTGCCAATAGCCAATAACCACCGCCTGTCGCACTGCACTGC
ACTGCTACTCAAACTATTGTTGTGCGTTTCTTGTGCAGGCTCACTTTGTA
TCCACTATCCACTAGCTGTGCGCGGTAAAACAGTGCTGTAACGTCATCTA
GACAACCGGAGGCTTGTCTTCCTTTTCCCACCCCGACCCTGCTGTTGCTG
ACTTCAATATATTTCCTCCCTCTTTGTCTCCGGTATGTACACTACGCTGT
GCATCGACGGCCGGCAAGCAGGTTGTCTCTACGCCCCCAAACGGCGCCGG
TGCGTTCGAACCCAACTCCAGCCAGCTCGGTGCAGCGTCATGGCACCCAC
TGCACCTTCTGCGTCTAGGCGGGTTCCGGGTTGTGTCAAGAGAAGGGATA
AGACCAGAAGCAGCGCGGCCATGGGCAGCGGCAGTTGGAGTGGTACGACC
TGGTCGTCGCTGGCTCTGTTGGCGGTAGTGGGGGGGGGGGGGGCGGGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13033:6..2004-

>mRNA_E-fasciculatus_F_contig13033.2299.1 ID=mRNA_E-fasciculatus_F_contig13033.2299.1|Name=mRNA_E-fasciculatus_F_contig13033.2299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13033:6..2004- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGGCAGGCTCGGCAGGAACACAAGCTTCTATATTTTGCTGTCG
GTCGTGGCTGCGCTCCCGAGCAGCAGCAGGCAGGCTCGGCAGGAACACAA
GCTTCTATATTTTGCTGTCGGTCGTGGCTGCGCTCCCGAGGTTGTCTCTA
CGCCCCCAAACGGCGCCGGTGCGTTCGAACCCAACTCCAGCCAGCTCGGT
GCAGCGTCATGGCACCCACTGCACCTTCTGCGTCTAGGCGGGTTCCGGGT
TGTGTCAAGAGAAGGGATAAGACCAGAAGCAGCGCGGCCATGGGCAGCGG
CAGTTGGAGTGGTACGACCTGGTCGTCGCTGGCTCTGTTGGCGGTAGTGG
GGGGGGGGGGGGCGGGGGTTGTCTCTACGCCCCCAAACGGCGCCGGTGCG
TTCGAACCCAACTCCAGCCAGCTCGGTGCAGCGTCATGGCACCCACTGCA
CCTTCTGCGTCTAGGCGGGTTCCGGGTTGTGTCAAGAGAAGGGATAAGAC
CAGAAGCAGCGCGGCCATGGGCAGCGGCAGTTGGAGTGGTACGACCTGGT
CGTCGCTGGCTCTGTTGGCGGTAGTGGGGGGGGGGGGGGCGGGG
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