mRNA_E-fasciculatus_F_contig1303.2296.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: A0A6H5KT93_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT93_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.580e-50 Identity = 100/170 (58.82%), Postives = 117/170 (68.82%), Query Frame = 1
Query: 1 VLSQGIGHLADETTREEAAHGGRAAQHVRQMLEWVKAKTAQGNNEVETHTQMETSWLKTYPQTVFFYLMRFKHTRGREEKLTHRVVIPEAMDLAPYVSPPTSRG--EDPQQYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQTNKALILSYTRR 504
+L +GI LA ETTREE RAA++VR++ E +K K AQ +N+V ++ E SWLK P+TV YLMRF +T R EKLTH V IP+ MD+APY+ PPTSR P YDLTGVVHHIGQTT KGHYVAFVRLPGQ W +YDD VT T ALILSYTRR
Sbjct: 189 LLLEGITLLA-ETTREEPPDQ-RAAKYVRRISESLKGK-AQHDNDVGLSSREEQSWLKKCPRTVLLYLMRFAYTT-RGEKLTHDVHIPKEMDMAPYIGPPTSRAGARQPDMYDLTGVVHHIGQTTNKGHYVAFVRLPGQWWRRYDDAKVTEVVASQALTKNALILSYTRR 354
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI) HSP 1 Score: 179 bits (455), Expect = 3.910e-49 Identity = 98/170 (57.65%), Postives = 122/170 (71.76%), Query Frame = 1
Query: 1 VLSQGIGHLADETTREEAAHGGRAAQHVRQMLEWVKAKTAQGNNEVETHTQMETSWLKTYPQTVFFYLMRFKHTRGREEKLTHRVVIPEAMDLAPYVSPPTSRG--EDPQQYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQTNKALILSYTRR 504
+L +GI LA +TTREEA + RAA++VR++ E +K K AQ ++ V + E SWLK P+TV YLMRF +T R EKLTH V IP+ +D+APY+ PPT+R P YDL GVVHHIGQTT KGHYVAFVRLPG+GW++YDD VT + DV+T ALILSYTRR
Sbjct: 1258 LLLEGITLLA-QTTREEAPNQ-RAAEYVRRISESLKGK-AQHDSNVGLSSMEEQSWLKKCPRTVLLYLMRFAYTT-RGEKLTHDVYIPKEIDMAPYIGPPTTRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRR 1423
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: D7FYB9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI) HSP 1 Score: 178 bits (452), Expect = 7.220e-49 Identity = 98/170 (57.65%), Postives = 121/170 (71.18%), Query Frame = 1
Query: 1 VLSQGIGHLADETTREEAAHGGRAAQHVRQMLEWVKAKTAQGNNEVETHTQMETSWLKTYPQTVFFYLMRFKHTRGREEKLTHRVVIPEAMDLAPYVSPPTSRG--EDPQQYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQTNKALILSYTRR 504
+L +GI LA +TTREEA + RAA++VR++ E +K K AQ ++ V + E SWLK P+TV YLMRF +T R EKL H V IP+ +D+APY+ PPTSR P YDL GVVHHIGQTT KGHYVAFVRLPG+GW++YDD VT + DV+T ALILSYTRR
Sbjct: 738 LLLEGITLLA-QTTREEAPNQ-RAAEYVRRISESLKGK-AQHDSNVGLSSMEEQSWLKKCPRTVLLYLMRFAYTT-RGEKLIHDVYIPKEIDMAPYIGPPTSRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRR 903
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: D8LK32_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK32_ECTSI) HSP 1 Score: 155 bits (393), Expect = 2.360e-45 Identity = 89/174 (51.15%), Postives = 113/174 (64.94%), Query Frame = 1
Query: 1 VLSQGIGHLADETTREEAAHGGRAAQHVRQMLEWVKAKTAQGNNEVETHTQMETSWLKTYPQTVFFYLMRFKHTRGR----EEKLTHRVVIPEAMDLAPYVSPPTSRGEDPQ--QYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQTNKALILSYTRR 504
+ ++ I HLA TRE HG RAAQH+RQ++E +K +TAQ + V T E + LK P T+ FYL+RF+H R E KL+H V +P+++D+APY PP S DPQ +YDLTGVVHH G+TTK GHY AFV L G+ W +YDD VT DV T ALIL+YTRR
Sbjct: 3 IRTEAITHLAK--TREMGDHG-RAAQHLRQVVESLK-RTAQVGD-VGRSTLEEKTSLKQCPPTILFYLIRFEHVRSGGTFVERKLSHHVDVPKSIDIAPYTRPPASSAGDPQSERYDLTGVVHHEGETTKTGHYTAFVHLAGEEWRRYDDSKVTKVGYEDVLTENALILTYTRR 171
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: UPI0018906280 (valine--tRNA ligase, mitochondrial 1-like isoform X2 n=2 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI0018906280) HSP 1 Score: 79.3 bits (194), Expect = 4.440e-14 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 1
Query: 169 LKTYPQTVFFYLMRFKHTRGREEKLTHRVVIPEAMDLAPYVSPPTSRGEDPQQYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQTNKALILSYTR 501
+K P+ + +L RF+ R K+T V +DLAP++S P E PQ YDL GVV H+G GHY++++R GW +DD V + KA +L Y +
Sbjct: 318 VKKAPEVLIMHLKRFQSAGHRTSKITDMVNYQLELDLAPFMSSPD---EQPQNYDLYGVVEHVGSGKDSGHYMSYIRSSETGWFCFDDHKVWEITKEKALDTKAYLLFYVK 425
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: UPI0018901E5F (uncharacterized protein LOC119365074 isoform X1 n=1 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI0018901E5F) HSP 1 Score: 79.3 bits (194), Expect = 4.550e-14 Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 1
Query: 169 LKTYPQTVFFYLMRFKHTRGREEKLTHRVVIPEAMDLAPYVSPPTSRGEDPQQYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQTNKALILSYTR 501
+K P+ + +L RF+ R K+T V +DLAP++S P E PQ YDL GVV H+G GHY++++R GW +DD V + KA +L Y +
Sbjct: 318 VKKAPEVLIMHLKRFQSAGHRTSKITDMVNYQLELDLAPFMSSPD---EQPQNYDLYGVVEHVGSGKDSGHYMSYIRSSETGWFCFDDHKVWEITKEKALDTKAYLLFYVK 425
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: A0A2K2D108_BRADI (USP domain-containing protein n=5 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2D108_BRADI) HSP 1 Score: 74.3 bits (181), Expect = 2.250e-12 Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 136 VETHTQMETSWLKTYPQTVFFYLMRFKHTRGREEKLTHRVVIPEAMDLAPYVSPPTSRGEDPQQYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQTNKALILSYTR 501
+E H ++E + P+ + L RF++ K+ V +DL P++S P + PQ YDL GVV H+G T KGHYV F+R + W ++D+ V E V NKA +L Y +
Sbjct: 315 MEKHFKVEQA-----PEVLVIQLKRFQNLESCTSKIEDMVNYQLELDLKPFMSSPDDK---PQNYDLYGVVEHLG-TPSKGHYVCFIRSSQKDWFFFNDDKVVKWSEDGVLDNKAYLLFYVK 427
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: W7LHK3_GIBM7 (Ubiquitin carboxyl-terminal hydrolase n=83 Tax=Fusarium TaxID=5506 RepID=W7LHK3_GIBM7) HSP 1 Score: 72.8 bits (177), Expect = 7.740e-12 Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 169 LKTYPQTVFFYLMRFKHTR--GREEKLTHRVVIPEAMDLAPYVSPPTSRGEDPQQ-YDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQ 468
+K P+ + +L RFK+T R +KL HRVV P + + T EDP + Y+L VV HIG GHYV+ +++PG+GWI +DDE V D+ V+
Sbjct: 368 VKRLPKILTLHLKRFKYTEDYSRLQKLFHRVVYPYHLRMFNT----TDNAEDPDRLYELYAVVVHIGGNAYHGHYVSIIKVPGRGWILFDDEMVEPVDKNFVR 466
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: A0A559LCJ1_FUSOX (Ubiquitin carboxyl-terminal hydrolase n=13 Tax=Fusarium TaxID=5506 RepID=A0A559LCJ1_FUSOX) HSP 1 Score: 72.8 bits (177), Expect = 7.740e-12 Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 169 LKTYPQTVFFYLMRFKHTR--GREEKLTHRVVIPEAMDLAPYVSPPTSRGEDPQQ-YDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQ 468
+K P+ + +L RFK+T R +KL HRVV P + + T EDP + Y+L VV HIG GHYV+ +++PG+GWI +DDE V D+ V+
Sbjct: 368 VKRLPKILTLHLKRFKYTEDYSRLQKLFHRVVYPYHLRMFNT----TDNAEDPDRLYELYAVVVHIGGNAYHGHYVSIIKVPGRGWILFDDEMVEPVDKNFVR 466
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Match: A0A8H4U126_9HYPO (USP domain-containing protein n=1 Tax=Fusarium zealandicum TaxID=1053134 RepID=A0A8H4U126_9HYPO) HSP 1 Score: 70.9 bits (172), Expect = 3.180e-11 Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query: 169 LKTYPQTVFFYLMRFKHTR--GREEKLTHRVVIPEAMDLAPYVSPPTSRGEDPQQYDLTGVVHHIGQTTKKGHYVAFVRLPGQGWIKYDDEDVTHADERDVQ 468
+K P+ + +L RFK+T R +KL HRVV P + + + G+ + Y+L VV HIG GHYV+ V++PG+GW+ +DDE V D+ V+
Sbjct: 84 VKRLPKILTLHLKRFKYTEDYSRLQKLFHRVVYPYHLRM---FNTTDDAGDPDRLYELYAVVVHIGGNAYHGHYVSIVKVPGRGWVLFDDEMVEPVDKNFVR 182 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1303.2296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1303.2296.1 >prot_E-fasciculatus_F_contig1303.2296.1 ID=prot_E-fasciculatus_F_contig1303.2296.1|Name=mRNA_E-fasciculatus_F_contig1303.2296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp VLSQGIGHLADETTREEAAHGGRAAQHVRQMLEWVKAKTAQGNNEVETHTback to top mRNA from alignment at E-fasciculatus_F_contig1303:12824..14360+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1303.2296.1 ID=mRNA_E-fasciculatus_F_contig1303.2296.1|Name=mRNA_E-fasciculatus_F_contig1303.2296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1537bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1303:12824..14360+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1303:12824..14360+ >mRNA_E-fasciculatus_F_contig1303.2296.1 ID=mRNA_E-fasciculatus_F_contig1303.2296.1|Name=mRNA_E-fasciculatus_F_contig1303.2296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1303:12824..14360+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |