mRNA_E-fasciculatus_F_contig1303.2295.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1303.2295.1 vs. uniprot
Match: D7FSR8_ECTSI (Similar to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI) HSP 1 Score: 237 bits (605), Expect = 1.220e-67 Identity = 144/265 (54.34%), Postives = 166/265 (62.64%), Query Frame = 2
Query: 32 PPALRLPPVPILRGLQNNRGQNLCCVNSIVQLLRHCPQLLEGLSNFSRIPSTPNRAGTSSTDAAKEKQEQLAATRGMATMMKAMGKPSEAPVGFVNPSLQKFIYNGRDDLRRGQQGDAHQVLMKLLDAFSVASKGDEPARVSLKEAMSDMTPVVAMQRVCSCGNVSSTTQSKEPTLTVPMLPSDGRRVLPG-LEALLKEKFATTSLPGCSKCQGLAEVRAHKEDWLGMLRQSTGEGAGALSEAVEATHTTAHTC-YDICNRLLDQ 820
PPA L P RGLQN+ NLCCVN+++QLLRHCPQL EGLS + R S N G SST AAKEK+E+ ATRGMA +MK M PS V+PSL +IYN DDL+RGQQGDAH +LMKLLDA SVAS+ S G VSS +KE TLTVP+L +DG LPG ++ALL +KFATTSL C CQGL EVRAHK +WL MLR G G A+SE+VEA T H C YDI LLDQ
Sbjct: 967 PPARPLLGAPSKRGLQNSSSANLCCVNAVLQLLRHCPQLREGLSAYPRTFSATNAPGNSSTRAAKEKREKQLATRGMAMLMKRMDIPSRRGACHVHPSLANYIYN-EDDLQRGQQGDAHLILMKLLDALSVASE--------------------------SGGTVSSGKDTKEHTLTVPLLSADGNGKLPGDVKALLTKKFATTSLSPCYACQGLDEVRAHKGEWLEMLRHQMG-GTTAVSESVEAPQTAEHACLYDIVELLLDQ 1203
BLAST of mRNA_E-fasciculatus_F_contig1303.2295.1 vs. uniprot
Match: D7FYB9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI) HSP 1 Score: 205 bits (522), Expect = 6.180e-57 Identity = 132/265 (49.81%), Postives = 153/265 (57.74%), Query Frame = 2
Query: 32 PPALRLPPVPILRGLQNNRGQNLCCVNSIVQLLRHCPQLLEGLSNFSRIPSTPNRAGTSSTDAAKEKQEQLAATRGMATMMKAMGKPSEAPVGFVNPSLQKFIYNGRDDLRRGQQGDAHQVLMKLLDAFSVASKGDEPARVSLKEAMSDMTPVVAMQRVCSCGNVSSTTQSKEPTLTVPMLPSDGRRVLPG-LEALLKEKFATTSLPGCSKCQGLAEVRAHKEDWLGMLRQSTGEGAGALSEAVEATHTTAHTC-YDICNRLLDQ 820
PPA L P RGLQN+ NLCCVN+++QLLRHCPQL EGLS + R S N G SST AAKEK+E+ ATRGMA +MK L+RGQQGDAH +LMKLLDA SVAS+ S G VSS +KE TLTVP+L +DG LPG ++ALL +KFATTSL C CQGLAEVRAHK +WL MLR G G ++SE+VEA T H C YDI LLDQ
Sbjct: 473 PPARPLLGAPSKRGLQNSSSANLCCVNAVLQLLRHCPQLREGLSAYPRTFSATNAPGNSSTRAAKEKREKQLATRGMAMLMK---------------------------LQRGQQGDAHLILMKLLDALSVASE--------------------------SGGTVSSGKDTKEHTLTVPLLSADGNGKLPGDVKALLTKKFATTSLSPCYACQGLAEVRAHKGEWLEMLRHQMG-GTTSVSESVEAPQTAEHACLYDIVELLLDQ 683
BLAST of mRNA_E-fasciculatus_F_contig1303.2295.1 vs. uniprot
Match: D8LK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK33_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.990e-30 Identity = 77/150 (51.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query: 89 GQNLCCVNSIVQLLRHCPQLLEGLSNFSRIPSTPNRAGTSSTD---AAKEKQEQLAATRGMATMMKAMGKPSEAPVGFVNPSLQKFIYNGRDDLRRGQQGDAHQVLMKLLDAFSVASKGDEPARVSLKEAMSDMTPVVAMQRVCSCGNVS 529
G NLCCVN++VQLLRHCPQL EGL+ + P T + AGTSST A + +Q AA +G+A M K L +GQQGDAH VL+KLLDAFS AS+GDE A + LK+AM DMTPVVA + VCSCG+VS
Sbjct: 233 GANLCCVNAVVQLLRHCPQLREGLAAYLTTPLTTSSAGTSSTGDRGGAAKNAKQKAAAKGVAAMTK---------------------------LVQGQQGDAHLVLIKLLDAFSEASEGDEGADM-LKKAMVDMTPVVASEHVCSCGHVS 354
BLAST of mRNA_E-fasciculatus_F_contig1303.2295.1 vs. uniprot
Match: D7FT90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT90_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 3.220e-9 Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 2
Query: 179 PSTPNRAGTSSTDAAKEKQEQLAATRGMATMMKAMGKPSEAPVGFVNPSLQKFIYNGRDDLRRGQQGDAHQVLMKLLDAFSVASKGDEPARVSL 460
P T NRAG S ++Q+ TR M MK S++ + FV PSL +++NG DD GDAH+V +KLLDAFS + DE V L
Sbjct: 3 PLTTNRAGKSFAGDCAVARKQVVDTRRMTITMKVTEDSSKSGICFVAPSLTGYVHNGEDD------GDAHRVCVKLLDAFSGTLESDETGPVPL 90
BLAST of mRNA_E-fasciculatus_F_contig1303.2295.1 vs. uniprot
Match: A0A6H5KT93_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT93_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 4.440e-5 Identity = 47/144 (32.64%), Postives = 60/144 (41.67%), Query Frame = 2
Query: 521 NVSSTTQSKEPTLTVPMLPSDGRRVLPG-LEALLKE-------------------------------KFATTSLPGCSKCQGLA-----------EVRAHKEDWLGMLRQSTGEGAGALSEAVEATHTTAHTC-YDICNRLLDQ 820
+VSS +KE TLT+P+L SDG +PG +EAL+K+ F C+ + +VRAHK +WL MLR G G +SE VE T H C YDI LLDQ
Sbjct: 5 HVSSGADTKEHTLTIPLLSSDGNGKVPGGVEALMKKGRDRVGEFQELRVLSGRGRDSPPTTSGVSQVTFPRARCCAVDSCRRFSSTFPYRYAPALKVRAHKGEWLEMLRHQIG-GTTTVSEWVEVPQTAEHACLYDIVELLLDQ 147 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1303.2295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1303.2295.1 >prot_E-fasciculatus_F_contig1303.2295.1 ID=prot_E-fasciculatus_F_contig1303.2295.1|Name=mRNA_E-fasciculatus_F_contig1303.2295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp MPPAGWGKAEAAGSTAAARTYPQGAPEQPRPEFVLRELYRAAATPLPTASback to top mRNA from alignment at E-fasciculatus_F_contig1303:5467..11027+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1303.2295.1 ID=mRNA_E-fasciculatus_F_contig1303.2295.1|Name=mRNA_E-fasciculatus_F_contig1303.2295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5561bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1303:5467..11027+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1303:5467..11027+ >mRNA_E-fasciculatus_F_contig1303.2295.1 ID=mRNA_E-fasciculatus_F_contig1303.2295.1|Name=mRNA_E-fasciculatus_F_contig1303.2295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1303:5467..11027+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |