mRNA_E-fasciculatus_F_contig13028.2294.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13028.2294.1
Unique NamemRNA_E-fasciculatus_F_contig13028.2294.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13028.2294.1 vs. uniprot
Match: D7G547_ECTSI (GYF_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G547_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.220e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 MEEEWHYFDDTTNTQPRPFSVNELGKLYGASSVTASTLVWRDGLEDWSPLWALRSL 168
            M E W+Y DD TN Q  P ++ EL +LY +SSVT STL W+DG  DWS L AL SL
Sbjct:    1 MAEAWYYVDDATNAQQGPCTIPELERLYASSSVTDSTLFWKDGQADWSALSALPSL 56
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BLAST of mRNA_E-fasciculatus_F_contig13028.2294.1 vs. uniprot
Match: A0A653LZW0_9GAMM (Uncharacterized protein n=1 Tax=Luteimonas sp. 9C TaxID=2653148 RepID=A0A653LZW0_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 8.520e-5
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   10 EWHYFDDTTNTQPRPFSVNELGKLYGASSVTASTLVWRDGLEDWSPLWAL 159
            EW Y+ DTTNT+  P +   L +L    ++   TL+WRDGLE W+PL AL
Sbjct:    3 EW-YYADTTNTRQGPITTPALLQLRQQGTLGDDTLLWRDGLEAWTPLRAL 51
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13028.2294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G547_ECTSI5.220e-1357.14GYF_2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A653LZW0_9GAMM8.520e-548.00Uncharacterized protein n=1 Tax=Luteimonas sp. 9C ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13028contigE-fasciculatus_F_contig13028:3323..3490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927808.083862-CDS-E-fasciculatus_F_contig13028:3322..34901622927808.083862-CDS-E-fasciculatus_F_contig13028:3322..3490Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13028 3323..3490 +
1695995703.3448026-CDS-E-fasciculatus_F_contig13028:3322..34901695995703.3448026-CDS-E-fasciculatus_F_contig13028:3322..3490Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13028 3323..3490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13028.2294.1prot_E-fasciculatus_F_contig13028.2294.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13028 3323..3490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13028.2294.1

>prot_E-fasciculatus_F_contig13028.2294.1 ID=prot_E-fasciculatus_F_contig13028.2294.1|Name=mRNA_E-fasciculatus_F_contig13028.2294.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
MEEEWHYFDDTTNTQPRPFSVNELGKLYGASSVTASTLVWRDGLEDWSPL
WALRSL
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mRNA from alignment at E-fasciculatus_F_contig13028:3323..3490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13028.2294.1 ID=mRNA_E-fasciculatus_F_contig13028.2294.1|Name=mRNA_E-fasciculatus_F_contig13028.2294.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13028:3323..3490+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAAGAGTGGCACTACTTCGACGACACCACCAACACTCAGCCACG
TCCTTTTTCGGTGAACGAGCTCGGGAAGTTATACGGGGCCTCATCGGTGA
CCGCCTCGACGCTTGTATGGAGGGATGGACTGGAAGATTGGTCGCCTTTG
TGGGCGTTGCGGTCGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13028:3323..3490+

>mRNA_E-fasciculatus_F_contig13028.2294.1 ID=mRNA_E-fasciculatus_F_contig13028.2294.1|Name=mRNA_E-fasciculatus_F_contig13028.2294.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13028:3323..3490+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGAAGAGTGGCACTACTTCGACGACACCACCAACACTCAGCCACG
TCCTTTTTCGGTGAACGAGCTCGGGAAGTTATACGGGGCCTCATCGGTGA
CCGCCTCGACGCTTGTATGGAGGGATGGACTGGAAGATTGGTCGCCTTTG
TGGGCGTTGCGGTCGCTGATGGAGGAAGAGTGGCACTACTTCGACGACAC
CACCAACACTCAGCCACGTCCTTTTTCGGTGAACGAGCTCGGGAAGTTAT
ACGGGGCCTCATCGGTGACCGCCTCGACGCTTGTATGGAGGGATGGACTG
GAAGATTGGTCGCCTTTGTGGGCGTTGCGGTCGCTG
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