mRNA_E-fasciculatus_F_contig13027.2293.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13027.2293.1
Unique NamemRNA_E-fasciculatus_F_contig13027.2293.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13027.2293.1 vs. uniprot
Match: D7FWJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.110e-27
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MGGEDITFDSATRDVLISTAKLIGSTCVDENLAFTKCKAENSDPEACLKLGHAVLACNNKV 183
            MG ED+ F SATRDVLISTAKL+GS+CVDENLAFTKCKAENSDPEAC+KLG AVL C +K 
Sbjct:    1 MGEEDMPFPSATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACMKLGVAVLECTSKA 61
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BLAST of mRNA_E-fasciculatus_F_contig13027.2293.1 vs. uniprot
Match: A0A6L2NXU0_TANCI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NXU0_TANCI)

HSP 1 Score: 47.8 bits (112), Expect = 2.020e-5
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   34 TRDVLISTAKLIGSTCVDENLAFTKCKAENSDPEACLKLGHAVLAC 171
            T  VL+S +K I + C  EN+AF KCK ++S+PE CL+ G  V  C
Sbjct:   11 TSAVLMSASKHIATRCRGENVAFLKCKKDDSNPEKCLEKGRQVTRC 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13027.2293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWJ7_ECTSI2.110e-2780.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6L2NXU0_TANCI2.020e-547.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13027contigE-fasciculatus_F_contig13027:926..1596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_003330.1
Exons2
Model size186
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.7469928-CDS-E-fasciculatus_F_contig13027:925..10411622927807.7469928-CDS-E-fasciculatus_F_contig13027:925..1041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13027 926..1041 -
1695995703.3262553-CDS-E-fasciculatus_F_contig13027:925..10411695995703.3262553-CDS-E-fasciculatus_F_contig13027:925..1041Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13027 926..1041 -
1622927807.790773-CDS-E-fasciculatus_F_contig13027:1526..15961622927807.790773-CDS-E-fasciculatus_F_contig13027:1526..1596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13027 1527..1596 -
1695995703.3355272-CDS-E-fasciculatus_F_contig13027:1526..15961695995703.3355272-CDS-E-fasciculatus_F_contig13027:1526..1596Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13027 1527..1596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13027.2293.1prot_E-fasciculatus_F_contig13027.2293.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13027 926..1596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13027.2293.1

>prot_E-fasciculatus_F_contig13027.2293.1 ID=prot_E-fasciculatus_F_contig13027.2293.1|Name=mRNA_E-fasciculatus_F_contig13027.2293.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=62bp
MGGEDITFDSATRDVLISTAKLIGSTCVDENLAFTKCKAENSDPEACLKL
GHAVLACNNKV*
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mRNA from alignment at E-fasciculatus_F_contig13027:926..1596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13027.2293.1 ID=mRNA_E-fasciculatus_F_contig13027.2293.1|Name=mRNA_E-fasciculatus_F_contig13027.2293.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=671bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13027:926..1596- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGGGGAGGATATCACGTTCGATTCAGCCACAAGAGATGTGCTCAT
CTCTACAGCAAAGCTTATAGGTAAAATTTCATTTTTTCGACAGTGCGCTG
ACAAAAGTCGACGCAACCAAGGAGTCAGTTGTCCACTGGCGCTGCGCGCA
AGTCCATGGCGCCGAGCACGCATGAAAATCTAGTGGAATTCTTACAGAGA
TTACCGGTGGTGATCTTGCTCCTAGAAGTTACGGCAGGCGGAAACAGGAT
GGATTTCAGGGGCCCGTATCGGTGGACTAGGGAGTGTCGGAACCCCCGTA
CCCGCCTCGAAGGAACGACTACGGCATGTACGGCTATGAGCAAACCCCTC
TAAACCAGGGAAGCCATTTTTGAGCCACCGTTGGCAAAGTAGCAAGGAAC
GTGTGGCCATTGGTGATCGGCCCTGTGGGAACAATGCTCCGTCCTCTCGA
GGGCGCGTGGTCAATGGTCTAGCGGCTAAGGCATGCAAAACATCAGAGTA
CCCCCCCCCCCCCCCCCTCCAACGCCCCCCCCTGCTCGGAAACCCTTCCT
GATAGGCTCGACCTGCGTGGATGAGAACCTTGCGTTTACCAAGTGCAAGG
CAGAAAACTCAGACCCGGAGGCTTGCCTGAAACTCGGCCATGCCGTCTTG
GCGTGCAACAATAAAGTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13027:926..1596-

>mRNA_E-fasciculatus_F_contig13027.2293.1 ID=mRNA_E-fasciculatus_F_contig13027.2293.1|Name=mRNA_E-fasciculatus_F_contig13027.2293.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13027:926..1596- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGGGGAGGATATCACGTTCGATTCAGCCACAAGAGATGTGCTCAT
CTCTACAGCAAAGCTTATAGATGGGCGGGGAGGATATCACGTTCGATTCA
GCCACAAGAGATGTGCTCATCTCTACAGCAAAGCTTATAGGCTCGACCTG
CGTGGATGAGAACCTTGCGTTTACCAAGTGCAAGGCAGAAAACTCAGACC
CGGAGGCTTGCCTGAAACTCGGCCATGCCGTCTTGGCGTGCAACAATAAA
GTGTGAGCTCGACCTGCGTGGATGAGAACCTTGCGTTTACCAAGTGCAAG
GCAGAAAACTCAGACCCGGAGGCTTGCCTGAAACTCGGCCATGCCGTCTT
GGCGTGCAACAATAAAGTGTGA
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