mRNA_E-fasciculatus_F_contig13024.2292.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13024.2292.1
Unique NamemRNA_E-fasciculatus_F_contig13024.2292.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A6H5KFM7_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFM7_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 2.170e-129
Identity = 187/198 (94.44%), Postives = 190/198 (95.96%), Query Frame = 1
Query:  139 GVKAEPALGAAALERVMAAAKAAHEDQQRCAEDQRAVCDLCNVRRADLRGPCGHKYHARCIYSMPITRCPVCDADFGNDDGLFILPVEPYSATTLFEDDERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPDRPMGEEHIAKHREAQKRLSDLEEV 732
            GVKAEPALGA ALERVMAAAKAAHE+QQRCAEDQRAVCDLCNVRRADLRGPCGHKYHARCIYSMPI RCPVCD DFGNDDGLFILPVEPYSAT  FE+DERKG D EHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCP RPMGEEHIAKHREAQKRLSDLEE+
Sbjct:   43 GVKAEPALGAVALERVMAAAKAAHEEQQRCAEDQRAVCDLCNVRRADLRGPCGHKYHARCIYSMPIVRCPVCDMDFGNDDGLFILPVEPYSATNFFEEDERKGGDREHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPGRPMGEEHIAKHREAQKRLSDLEEM 240          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: D8LER0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER0_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 3.740e-129
Identity = 199/240 (82.92%), Postives = 203/240 (84.58%), Query Frame = 1
Query:   13 HVTGMNVGQARGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVKAEPALGAAALERVMAAAKAAHEDQQRCAEDQRAVCDLCNVRRADLRGPCGHKYHARCIYSMPITRCPVCDADFGNDDGLFILPVEPYSATTLFEDDERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPDRPMGEEHIAKHREAQKRLSDLEEV 732
            H TGMNVGQA  G                            SGVKAEPALGAAALE+VMAAAK A E+QQRCAEDQRAVCDLCNVRRADLRGPCGHKYHARCIYSMPI RCPVCD DFGNDDGLFILPVEPYSAT LFE+DERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCP RPMGEEHIAKHREAQKRLSDLEE+
Sbjct:    9 HGTGMNVGQATAGAGGSIAAGDGGIGEHSSSSS--------SGVKAEPALGAAALEKVMAAAKVAQEEQQRCAEDQRAVCDLCNVRRADLRGPCGHKYHARCIYSMPIVRCPVCDMDFGNDDGLFILPVEPYSATNLFEEDERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPGRPMGEEHIAKHREAQKRLSDLEEM 240          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: D8LLI7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLI7_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 3.090e-83
Identity = 133/171 (77.78%), Postives = 143/171 (83.63%), Query Frame = 1
Query:  244 AVCDLCNVRRADLRGPCGHKYHARCIYSMPITRCPVCDADFGN--DDGLFILPVEPYS----ATTLFEDDERKG--RDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPDRPMGEEHIAKHREAQKRLSDLEEV 732
            +VCDLCN+RRADLRGPCGHKYHARCIY+MPITRCPVCD  F N  D GL ILPVEP+S    AT   EDD R G    AE Q+RTGRWHS+ETMYAQRIVADFDAGT+PL EGTKLGN LCNILNCSPSRLSKKLKIGKK FQ+  DRPM  EHIA+HREAQKRLSDLEE+
Sbjct:   33 SVCDLCNMRRADLRGPCGHKYHARCIYAMPITRCPVCDQAFPNTNDGGLLILPVEPFSDAGGATGESEDDSRTGAREGAETQTRTGRWHSFETMYAQRIVADFDAGTLPLCEGTKLGNLLCNILNCSPSRLSKKLKIGKKCFQQREDRPMTPEHIARHREAQKRLSDLEEM 203          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A836CDJ8_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ8_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.280e-55
Identity = 86/166 (51.81%), Postives = 116/166 (69.88%), Query Frame = 1
Query:  235 DQRAVCDLCNVRRADLRGPCGHKYHARCIYSMPITRCPVCDADFGNDDGLFILPVEPYSATTLFEDDERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPDRPMGEEHIAKHREAQKRLSDLEEV 732
            ++R VCDLC++RRAD+R PCGH  HARCIY +P++ CPVC AD    +GL +LPVEP++             +A+ + RTGRWH YET YAQ ++ DF+AGT+P+ EGTKL   LC +LNC+ +RLSKKLKIGK+++   P R    E IA H   Q+R+S+LEE+
Sbjct:   13 EERVVCDLCSIRRADVRTPCGHALHARCIYQLPLSECPVCRADMTQSEGLQVLPVEPHN--------NEPAENADTELRTGRWHHYETQYAQHLMEDFEAGTLPIGEGTKLATLLCRLLNCNQTRLSKKLKIGKRFYAHGPTRIRTPEAIAAHSVRQRRISELEEM 170          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A835ZCD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.200e-25
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 1
Query:  469 RTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGKKYFQRCPDRPMGEEHIAKHREAQKRLSDLEEV 732
            RTGRWHSYET+YAQ ++ DF+AGT+P+ EGTKL + LC +LNC+ +RLSKKLKIGK+++   P R    E IA HR  Q+R+S+LEE+
Sbjct:   68 RTGRWHSYETLYAQHVIDDFEAGTLPIGEGTKLASLLCRLLNCNQTRLSKKLKIGKRFYAHAPAREPTLEAIAAHRVRQRRVSELEEM 155          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A662WLN8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLN8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.320e-13
Identity = 47/136 (34.56%), Postives = 66/136 (48.53%), Query Frame = 1
Query:  250 CDLCNVRRADLR-GPCGHKYHARCIYSMPITRCPVCDADFGNDDGLFILPVEPYSATTLFEDDERKGRDAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK---IGKKYF 645
            CD C    A L    CGH++H RCI+S P TRC +C A           PV        F++ +  G       R G+W + E  YA  ++  F  G +PL++G  L  F+ N+L C P R++KK     IGK+ F
Sbjct:   19 CDGCKSCGAILELDGCGHRFHPRCIFSWPATRCELCAA-----------PVTTLRVFREFKNLQNSG------VRKGKWSADEHKYANMMMKQFQLGALPLADGLHLRGFIANLLQCDPLRVTKKYAGQAIGKQNF 137          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A836CP88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP88_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.200e-9
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  469 RTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQR 651
            R G+W   E  YA+R++A+F AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R
Sbjct:    5 RRGKWTQEEDAYARRLIAEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFTGAHCIGKQVFRR 69          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A1Z5JMG8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMG8_FISSO)

HSP 1 Score: 68.6 bits (166), Expect = 1.290e-9
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 1
Query:  235 DQRAVCDLCNVRRADLRG-PCGHKYHARCIY---SMPITRCPVCDADFGNDDGLFILPV------EPYSATTLFEDDERKGRDAEH------------QSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLKIGK 636
            D+   C  C     D+R   CG   HARC+    + P+T C +C       +GL++ P+      E     +   D + +GR  +             + RTGRW + E  Y  +++  F+ G +P+ +G+KL  FL N+L    SRL+KK+K  K
Sbjct:   27 DEYVSCSRCGHGGCDIRVFGCGCTVHARCMALNPNGPLTTCTLCHKP---TNGLYLFPMSFREIDEAAKIASSLLDAKGRGRKRKGAPEDEFPGAYLTERRTGRWTTDEMAYCDKLIEKFEKGEVPIEDGSKLNEFLGNMLKSKQSRLTKKMKNAK 179          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A7S4J6Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Z5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.030e-8
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  469 RTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQR 651
            R G+W   E  YA R++ +F AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R
Sbjct:   40 RRGKWTPEEESYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRR 104          
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Match: A0A7S2NX07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX07_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-8
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  469 RTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCSPSRLSKKLK----IGKKYFQR 651
            R G+W   E  YA R++ +F AG +PL++GT L  FL  +LNC P R+SKK      IGK+ F+R
Sbjct:  162 RRGKWTPEEEAYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRR 226          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13024.2292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFM7_9PHAE2.170e-12994.44RING-type domain-containing protein (Fragment) n=1... [more]
D8LER0_ECTSI3.740e-12982.92RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LLI7_ECTSI3.090e-8377.78RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CDJ8_9STRA1.280e-5551.81RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZCD8_9STRA2.200e-2559.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662WLN8_9STRA6.320e-1334.56Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A836CP88_9STRA1.200e-947.69Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A1Z5JMG8_FISSO1.290e-929.49Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4J6Z5_9STRA2.030e-846.15Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2NX07_9STRA3.650e-846.15Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13024contigE-fasciculatus_F_contig13024:374..2634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score396.0
Seed ortholog evalue1.3e-107
Seed eggNOG ortholog2880.D8LER0
EggNOG free text desc.Ring finger
EggNOG OGs28HE3@1,2RTIT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size732
Cds size732
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13024.2292.1prot_E-fasciculatus_F_contig13024.2292.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13024 374..2634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.425257-CDS-E-fasciculatus_F_contig13024:373..5001622927807.425257-CDS-E-fasciculatus_F_contig13024:373..500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 374..500 -
1695995703.2790937-CDS-E-fasciculatus_F_contig13024:373..5001695995703.2790937-CDS-E-fasciculatus_F_contig13024:373..500Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 374..500 -
1622927807.4401917-CDS-E-fasciculatus_F_contig13024:1294..14291622927807.4401917-CDS-E-fasciculatus_F_contig13024:1294..1429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 1295..1429 -
1695995703.2926085-CDS-E-fasciculatus_F_contig13024:1294..14291695995703.2926085-CDS-E-fasciculatus_F_contig13024:1294..1429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 1295..1429 -
1622927807.4621317-CDS-E-fasciculatus_F_contig13024:1689..18461622927807.4621317-CDS-E-fasciculatus_F_contig13024:1689..1846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 1690..1846 -
1695995703.3031502-CDS-E-fasciculatus_F_contig13024:1689..18461695995703.3031502-CDS-E-fasciculatus_F_contig13024:1689..1846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 1690..1846 -
1622927807.4750922-CDS-E-fasciculatus_F_contig13024:2321..26341622927807.4750922-CDS-E-fasciculatus_F_contig13024:2321..2634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 2322..2634 -
1695995703.314317-CDS-E-fasciculatus_F_contig13024:2321..26341695995703.314317-CDS-E-fasciculatus_F_contig13024:2321..2634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13024 2322..2634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13024.2292.1

>prot_E-fasciculatus_F_contig13024.2292.1 ID=prot_E-fasciculatus_F_contig13024.2292.1|Name=mRNA_E-fasciculatus_F_contig13024.2292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=244bp
MLPQHVTGMNVGQARGGGGGAPAGGGGGGRGGGGGAGAGEHSSSSSGVKA
EPALGAAALERVMAAAKAAHEDQQRCAEDQRAVCDLCNVRRADLRGPCGH
KYHARCIYSMPITRCPVCDADFGNDDGLFILPVEPYSATTLFEDDERKGR
DAEHQSRTGRWHSYETMYAQRIVADFDAGTMPLSEGTKLGNFLCNILNCS
PSRLSKKLKIGKKYFQRCPDRPMGEEHIAKHREAQKRLSDLEEV
back to top

mRNA from alignment at E-fasciculatus_F_contig13024:374..2634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13024.2292.1 ID=mRNA_E-fasciculatus_F_contig13024.2292.1|Name=mRNA_E-fasciculatus_F_contig13024.2292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2261bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13024:374..2634- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCCCGCAGCACGTGACTGGGATGAACGTTGGACAAGCAAGGGGGGG GGGGGGGGGGGCCCCCGCGGGGGGGGGGGGCGGGGGCAGGGGGGGGGGGG GCGGCGCCGGCGCCGGCGAGCACAGCAGCAGCAGCAGCGGTGTCAAGGCG GAGCCTGCCCTAGGCGCGGCGGCGCTTGAGAGGGTGATGGCTGCCGCAAA GGCTGCCCACGAGGATCAGCAGAGGTGCGCGGAGGACCAGAGGGCGGTGT GCGACCTCTGCAACGTCCGCAGAGCCGACCTGCGGGGACCCTGTGGGCAC AAGTACCACGCACGTGAGTAGCAGTAGTAGTTGTATAGTAGGTAGTAGTA GTAGCGTCTCCTGGCGAGGCTGTGGGGGTTGGATGGTGTGCCGTTTCATT GCTCTTTATTTTCTTTTGCTCGTGAACCTGATTCTCAAGTCTACAGCAGA GGTGCTCCTTGGTCCCCCTGCGCTTGGCTCGGGGGTGGGGGGGGGGGGGG GGGGGGAGGGTAGGCGAAAGGCTCGTCGACGGAAGAAAACATGGTGGCGC CGTTGTGTCCCATGTATTAGCGTTTTCCATCTGCGTACCCCGTGAGACGA TCGTGGAAGCAAGCATTGCGTGTTGAGGGGTTAGACCTGACAAACTTTTA AACATGAATCGGCAAACTCATTTCTCTCGACCACGGCATCTTGGCCCCCT CTGGTCTTGCTGCTGCTGCTGCTGCTGATGTTTAATACCGCCCCAACTCA AACTCAAATGGAAAACCGGATGCATATATCTACTCCAGGCTGCATCTACT CGATGCCCATCACTCGGTGCCCGGTCTGCGACGCGGACTTCGGAAACGAC GATGGACTGTTCATCCTTCCGGTCGAGCCTTACTCCGCCACTACCCTCTT CGAGGATGACGAGCGCAAGGGTCGCGACGCAGAGCACCAATCGAGGTGAA CAAGAACGTACTGGCCTCTTCTGCTTGTGGGTGTGACCTCGGCTGATAAA ATCTATTCCGTGACATGCATATTTTGTGGTACGGTATATTCATACGTCTG TACTCCATTTGGTGATTGTGCTTGTTTGTTTCGCCGACAGCTTTTATTTT GTTCGTCTCCTTTTGTTTTTTTTGTTTCTTTTTTTTTTATCGCAAGACAA TTTTTCTCATGTGTGTGTCTCCTTTCATTTCGTTCTTTTGTTTTTTCGCT GGCAGGACCGGGAGGTGGCACTCGTATGAGACCATGTACGCGCAGCGGAT CGTGGCGGACTTCGACGCGGGCACCATGCCCCTGAGCGAAGGGACCAAGC TCGGAAACTTCCTGTGCAACATCCTCAACTGCTCGCCATCGTGAGTTCGC TCTTAGCTAGCTAGCTACCGCTGTGTGCAAGCAACGGCGGCCGCCCCAAC AGGAAAAGGGTTGTGGTTGTTGGAGAGACAGTTGGTGCGTTTGTGCGGCT CGTTGTAGGAAGAGTCTAGTCTAGTCGGCCATTCGAACTTGCAAGTTAGT GCAGCAGCTGTTGGGCCTTCCTTTTGTAGGAAGAGTCTGGTCCGCTTTCT CGAAGAATTGTGCAGTTTTTGAGCCATTCGTAGGAAACGTTTCTCGTCTG CTTTGGGAATATTTGTTCGCGGCTTCTTGGCCGGTTGGGAATGCACGGGC CGTAGAGGATAAACGAGAAACAGCGGCTTGCGCGGCACGGAAGCCCGCTG TTCGTTTCGGGCAACGTTGTCACGGACTGACCCGCATCCCGTATTGGCAA AACCTTTATGGATGGCGGTTTTCCGCCTGTTCCGCATCCCGTATTCACAA AACCGTGATGCATGGCGGTTTTCCTCCGGTTCCTCATCTCGTTTTTTCCG CGTGTTCCGCATCAAGTTTTCATTAAACCGTGATGGATGGTGGTTTACCT CCTGTTCCTTGTCCCATTTTTACGAACCGTGGTGGATGGCGGTTTTCTGC CTGTTCCGCAACAAGGGTGGGACACCGAGCCTAGCCTGACGGGATATTGC CTTGCACATCTTTGGTTAAGATCCTCTGTGGCGTTTCTTCTTGCGGCCCA CCATCCACTTACCCACTCTCATGCGGTGGCGCCCGTCTGTCCGTCGGTCT GTTCGTCCAATCGCGCACCCATTGATTCGCCCAGGCGGCTTTCTAAGAAG CTCAAGATCGGAAAGAAGTACTTCCAACGGTGCCCGGATCGACCAATGGG CGAGGAGCACATCGCCAAGCACCGGGAGGCGCAGAAGCGGCTCAGCGACC TCGAAGAGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13024:374..2634-

>mRNA_E-fasciculatus_F_contig13024.2292.1 ID=mRNA_E-fasciculatus_F_contig13024.2292.1|Name=mRNA_E-fasciculatus_F_contig13024.2292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13024:374..2634- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCCCGCAGCACGTGACTGGGATGAACGTTGGACAAGCAAGGGGGGG
GGGGGGGGGGGCCCCCGCGGGGGGGGGGGGCGGGGGCAGGGGGGGGGGGG
GCGGCGCCGGCGCCGGCGAGCACAGCAGCAGCAGCAGCGGTGTCAAGGCG
GAGCCTGCCCTAGGCGCGGCGGCGCTTGAGAGGGTGATGGCTGCCGCAAA
GGCTGCCCACGAGGATCAGCAGAGGTGCGCGGAGGACCAGAGGGCGGTGT
GCGACCTCTGCAACGTCCGCAGAGCCGACCTGCGGGGACCCTGTGGGCAC
AAGTACCACGCACATGCTCCCGCAGCACGTGACTGGGATGAACGTTGGAC
AAGCAAGGGGGGGGGGGGGGGGGGCCCCCGCGGGGGGGGGGGGCGGGGGC
AGGGGGGGGGGGGGCGGCGCCGGCGCCGGCGAGCACAGCAGCAGCAGCAG
CGGTGTCAAGGCGGAGCCTGCCCTAGGCGCGGCGGCGCTTGAGAGGGTGA
TGGCTGCCGCAAAGGCTGCCCACGAGGATCAGCAGAGGTGCGCGGAGGAC
CAGAGGGCGGTGTGCGACCTCTGCAACGTCCGCAGAGCCGACCTGCGGGG
ACCCTGTGGGCACAAGTACCACGCACGCTGCATCTACTCGATGCCCATCA
CTCGGTGCCCGGTCTGCGACGCGGACTTCGGAAACGACGATGGACTGTTC
ATCCTTCCGGTCGAGCCTTACTCCGCCACTACCCTCTTCGAGGATGACGA
GCGCAAGGGTCGCGACGCAGAGCACCAATCGAGGCTGCATCTACTCGATG
CCCATCACTCGGTGCCCGGTCTGCGACGCGGACTTCGGAAACGACGATGG
ACTGTTCATCCTTCCGGTCGAGCCTTACTCCGCCACTACCCTCTTCGAGG
ATGACGAGCGCAAGGGTCGCGACGCAGAGCACCAATCGAGGACCGGGAGG
TGGCACTCGTATGAGACCATGTACGCGCAGCGGATCGTGGCGGACTTCGA
CGCGGGCACCATGCCCCTGAGCGAAGGGACCAAGCTCGGAAACTTCCTGT
GCAACATCCTCAACTGCTCGCCATCGACCGGGAGGTGGCACTCGTATGAG
ACCATGTACGCGCAGCGGATCGTGGCGGACTTCGACGCGGGCACCATGCC
CCTGAGCGAAGGGACCAAGCTCGGAAACTTCCTGTGCAACATCCTCAACT
GCTCGCCATCGCGGCTTTCTAAGAAGCTCAAGATCGGAAAGAAGTACTTC
CAACGGTGCCCGGATCGACCAATGGGCGAGGAGCACATCGCCAAGCACCG
GGAGGCGCAGAAGCGGCTCAGCGACCTCGAAGAGGTGGCGGCTTTCTAAG
AAGCTCAAGATCGGAAAGAAGTACTTCCAACGGTGCCCGGATCGACCAAT
GGGCGAGGAGCACATCGCCAAGCACCGGGAGGCGCAGAAGCGGCTCAGCG
ACCTCGAAGAGGTG
back to top