mRNA_E-fasciculatus_F_contig13022.2291.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13022.2291.1
Unique NamemRNA_E-fasciculatus_F_contig13022.2291.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13022.2291.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 9.390e-52
Identity = 85/104 (81.73%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:   28 QAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKSLLVCIRTSKRMKL 339
            QAFSKMRRVPRVIGSSRVIWSC+ VA+GL LLSA FW D+ VTGSYFW+TN  DP L+RWISLSFVTTQG AG LMAL L+FV TG+RRKSLLVCIRTSKRMKL
Sbjct:   69 QAFSKMRRVPRVIGSSRVIWSCVFVAMGLTLLSAPFWNDVLVTGSYFWITNRNDPNLARWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMKL 172
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BLAST of mRNA_E-fasciculatus_F_contig13022.2291.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 5.300e-51
Identity = 87/161 (54.04%), Postives = 119/161 (73.91%), Query Frame = 1 
Query:   28 QAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKSLLVCIRTSKRMKLYSILSAFGTCVYLYNGFVLLFDELSRLGSAKKELTMVGWCSKYLHVVAETLVLYYAF 510
            Q+F K+RRVP +IGS+R    C+++A+   +LSA FW  + +TG YFWVTNT +    RWISLSF  TQ  AG+LMALA+LF V+GER  SL VC +TS+R+K + IL+ FGT VYLYNG VL+FDE S    +K+ L ++GWCS+Y+HV+A+T +++ AF
Sbjct:   94 QSFVKLRRVPTMIGSTRAACVCLVLAILATVLSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISKR-LVIIGWCSRYVHVIADTGIIFGAF 253
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BLAST of mRNA_E-fasciculatus_F_contig13022.2291.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.860e-49
Identity = 85/161 (52.80%), Postives = 115/161 (71.43%), Query Frame = 1 
Query:   28 QAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIYVTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKSLLVCIRTSKRMKLYSILSAFGTCVYLYNGFVLLFDELSRLGSAKKELTMVGWCSKYLHVVAETLVLYYAF 510
            Q+F  +RRVP +IGS+R    C+++AV   +LSA FW  + +TG YFWVTNT +    RWISLSF  TQ  AG+LMAL +LF +TGER  SL VC +TS+R+K + IL+ FGT VYLYNG VL+FDE S    + + L ++GWCS+Y HV+A+T +++ AF
Sbjct:   94 QSFVTLRRVPTMIGSTRAACVCVVLAVLATVLSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISTR-LVIIGWCSRYAHVIADTGIIFGAF 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13022.2291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUL8_ECTSI9.390e-5281.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL6_ECTSI5.300e-5154.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRD9_9PHAE3.860e-4952.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13022contigE-fasciculatus_F_contig13022:1..3356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004170.1
Exons4
Model size531
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13022.2291.1prot_E-fasciculatus_F_contig13022.2291.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13022 1..3356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.3219213-CDS-E-fasciculatus_F_contig13022:0..1891622927807.3219213-CDS-E-fasciculatus_F_contig13022:0..189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 1..189 +
1695995703.243064-CDS-E-fasciculatus_F_contig13022:0..1891695995703.243064-CDS-E-fasciculatus_F_contig13022:0..189Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 1..189 +
1622927807.340644-CDS-E-fasciculatus_F_contig13022:1094..12451622927807.340644-CDS-E-fasciculatus_F_contig13022:1094..1245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 1095..1245 +
1695995703.2518547-CDS-E-fasciculatus_F_contig13022:1094..12451695995703.2518547-CDS-E-fasciculatus_F_contig13022:1094..1245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 1095..1245 +
1622927807.3587248-CDS-E-fasciculatus_F_contig13022:2303..23711622927807.3587248-CDS-E-fasciculatus_F_contig13022:2303..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 2304..2371 +
1695995703.2600424-CDS-E-fasciculatus_F_contig13022:2303..23711695995703.2600424-CDS-E-fasciculatus_F_contig13022:2303..2371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 2304..2371 +
1622927807.374926-CDS-E-fasciculatus_F_contig13022:3233..33561622927807.374926-CDS-E-fasciculatus_F_contig13022:3233..3356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 3234..3356 +
1695995703.2684608-CDS-E-fasciculatus_F_contig13022:3233..33561695995703.2684608-CDS-E-fasciculatus_F_contig13022:3233..3356Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13022 3234..3356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13022.2291.1

>prot_E-fasciculatus_F_contig13022.2291.1 ID=prot_E-fasciculatus_F_contig13022.2291.1|Name=mRNA_E-fasciculatus_F_contig13022.2291.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=177bp
VLLLGRYLSQAFSKMRRVPRVIGSSRVIWSCIIVAVGLALLSASFWKDIY
VTGSYFWVTNTKDPRLSRWISLSFVTTQGFAGVLMALALLFVVTGERRKS
LLVCIRTSKRMKLYSILSAFGTCVYLYNGFVLLFDELSRLGSAKKELTMV
GWCSKYLHVVAETLVLYYAFQVHFGF*
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mRNA from alignment at E-fasciculatus_F_contig13022:1..3356+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13022.2291.1 ID=mRNA_E-fasciculatus_F_contig13022.2291.1|Name=mRNA_E-fasciculatus_F_contig13022.2291.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13022:1..3356+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCTGCTCCTCGGACGCTACTTATCTCAGGCGTTTTCGAAAATGCGTAG
AGTGCCCAGAGTGATCGGTTCTTCCCGCGTGATCTGGAGCTGCATTATCG
TGGCGGTGGGGCTGGCGCTGCTCTCTGCCTCCTTCTGGAAAGACATCTAC
GTGACCGGGAGCTATTTCTGGGTAACCAACACCAAAGATGTGCGTTCGTA
CTTGAGAGAGAGAGAGAGAGTTCGATAATTTGTCGTTGTTGTTGCTGGTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTCCTCACGTTAATAACG
GTTCGGATCTCTCTATTCAGTACCTTCATCTGTCCGTGTGGATCAAACAC
TAGACGAGGTTCGATCCCCGTGGTCACAGGCCAACTTGCCCCCGAAAAGG
GAGACACTCAGATGAGAACAGATTCGCGTTTTGTTTCTTCGTCTTTCTGT
CGGTGTCTCCTTGTTGAATATGCTTCGATTTAGTGCTGCTGCTGTTATGG
TTGTTGTTGCTGTTTTTGTTGCTGCTCCTGCCGCTCCCTCTGTTTCGGAT
GCCGTTGGGAGTGCTGATGTTGTCCTTGTGGTAGGCTGCTGCTGCTGCTG
CTGCTGCTGTTGTTGCTCCTGTCGTTGCCGGTGATGCCGCTCTGCTTCTC
TTGGTGTTCCATTGGCTTTTTGGTGGTGGTGGCGGGACCACGGTAGGGTC
GGAGACGGTGGTGATGGCTATTTCCGTTGCCGATACTGATGGTGCTGTTG
ACGCCCGTCCGTCTCCTCTGTTGTCTCCATCTCTGACTCTGTCGTTGTCT
CCTTGCTTCTGTTTCTCTGTCTCTCTCTCTGTCTCCCTACATGTCTGTGT
CTCTGTCTGTCTGTCCTTGTCTCCTTGCCTCTGTTTCTCTGTGTCTGTCT
GTGCCTGTGTCTCTATGTTTGTCTCCTTTCCCCTGTTTCTCTGTCTCTGT
CTCTGTCTCTGTCTCTGCCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCT
GTCGGTCTTTGTCTCCTTACGTCTTTTTCTCTGCCTCTGTTTCTGTCTCT
GCCTCCATATATATCTCTGTCTCTGTGTCTACGCCTCTCCCCAGCCAAGG
TTATCTCGGTGGATCAGCCTGTCTTTCGTCACAACTCAGGGGTTTGCGGG
AGTGCTCATGGCACTCGCCCTACTGTTCGTAGTCACGGGGGAGAGAAGGA
AGAGCCTCCTCGTGTGCATCAGGACCAGCAAGCGGATGAAATTGTGTGAG
ATACTTACTTAGGGATAGGGTTAGGGTTAGGGTTCACATCATTGCAGACG
ACTTATAACAACCGTGAAGTCGTGCACCTGAATAGGTGCAACAAATTTAT
ATACTCCGGAGGGTGCGCGCTTTATATACTTCTTTGTAGTGGGACGAGCC
ACCTACCGTACGTGCAGAGAAAAGGACATCAGATTGATGGCGGCATGAGG
GTAGAAGTAGGGCGAACGTGCCCTGTATTATATTTTTTTCGGTGCTTAGG
CGGGTACAACCAGTCCTGTCAGTCGGTTCCTCCGGAACCTCGATCCATCC
CCTCCCGACCATGAGTACATCCCCCCCCCCTCCCGACCAAGCCGCCGTGG
TGGCAACGCGAAGCTACCGATTGCCTCTTGGAAAATCACCGTACAAACTG
CGGAAGCCAGCGCGCTAGTTTTCGATGCAGCGACAAACATACGCCGCCAA
TAAAACCCGCGGGATGCCTCCTTGAGCCTTTTCTGACGGGACGGAACACA
CTAGCGGATCGCAATAACACCGTTGTTGTGGCCCCTGCTTCATGCTACCG
GTTGGCGACGAAGCGGTTGTCGCATAAAAAGTCGCCGTGGCCTGTTCCCA
GTGCCTCGCATTCCCAAAATTTCTTCGAAGCGGAATAAATATAAGCGCCG
TTGACAACCAGCCAACCAAATACCCAAGGTGCCAAGAAAGGCCAATTACC
GCCGAATAGCCAGAGTGATAGTGAGTGGATCTTGCATGGCCGGCCTTTGT
GTTTCGCGCCTTACCTTTTGAAACCCCAAGGCACCTCTTATCGTTCCGTT
TCGTGCCCCCTGGCTGTCTGCCTTCTGTCTCTGTCTCTGTCCGTCTCTCG
CTCTGTCTATCTCTCTCCCCTCTGTTTGTGTGTGTTTCTTTCTCTCTCTT
TCTGTCTTTCTGTCGCTGTCTCTGTCTCCCTCCATGCTTCTGTCTCTGTC
TCTCTGCCCCTTCCTCTCTCTCTCTCTCCCCCCCCTGTCTCTCGGGTGTG
CACCCTCGCCGTTCGATGTCTGTCGTCCCCTCGCGGCAACGAAACTCTTG
AAGACTCCATCCTTTCCGCCTTCGGAACATGCGTCTACCTGTATAATGGC
TTCGTTCTACTGTTCGACGAGGTATGAGAAACGTCAAGGGGCCACAGTGC
GGTTTGCATAGCGCTGGTGCCCGATATGTTGTGCGGGTGAAAAAAAAAAA
AGCTGGCATAGACGGAAATATCAAGACGTTTTATACACTGAACGTTCAGC
TGTCCGCTGTAAAGTATGGGGTGCCAGCGCTTGACACATACCCGCTCTAT
TGCGGGCCGGTGACTGTACAAACGTGAGTGCAGCTGGTGCCGGGAGATAA
CAAACGTATCTAAAAAACGTTTTTTGCTCGGGTCGAGCCTCAAGGTCTTG
TTTCGTCGCCAACGTCGAGCACAGCAGTAGGCTTGAAACAGACTCGAAAT
ATGCCCAGCAACCAGCTGGGTTCCCTCCACTCACTGCAAAGACTTCAACA
CATCCCCTTCGATTGTGATTATATCTAGAACGGGTAGTCCTTTCTGTGTT
TGCATGAATTTCTCCTGATATTCTATGGTGGAGTGTAGGGCAGGGTCTAC
CTGGAGGCGTTGGGCGTACCGTAGGTGACACGAGTGTCACACCCCCTGGT
AAATGATTTCAAAGCTCCATTTCTCCTACAGCAGAAAGGAGTTGGAGCCG
TCTCGTAAAAGACTTTCCGAGAACGCGGCGTTTTGACCATGCAGGTTTAC
TGCCGTGGATTATTCGAGCTCTGAAAATCGGTCGAGCGGGTGTGATATCT
TGTGTCACCAACGGTAGTCCTCACCGCTGAGGCATCGGCGACGAAAAAAT
TGAAAGCGCGCGATCTTTGTTCGTACATATCCGCCTGCCGAGGACAGCAG
CGGCCTCTCCTCTTTGCTGGGACAATCATCAAACTCACCCCCCCCGGCCT
CCCCTCTTCCGCCGTCGCTACCACGGCTTTCAGCTATCCCGCCTCGGCTC
GGCGAAGAAGGAGCTCACCATGGTGGGCTGGTGCTCCAAGTACCTGCACG
TCGTTGCCGAAACCCTGGTGCTCTACTACGCTTTCCAGGTGCATTTTGGT
TTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13022:1..3356+

>mRNA_E-fasciculatus_F_contig13022.2291.1 ID=mRNA_E-fasciculatus_F_contig13022.2291.1|Name=mRNA_E-fasciculatus_F_contig13022.2291.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13022:1..3356+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCTGCTCCTCGGACGCTACTTATCTCAGGCGTTTTCGAAAATGCGTAG
AGTGCCCAGAGTGATCGGTTCTTCCCGCGTGATCTGGAGCTGCATTATCG
TGGCGGTGGGGCTGGCGCTGCTCTCTGCCTCCTTCTGGAAAGACATCTAC
GTGACCGGGAGCTATTTCTGGGTAACCAACACCAAAGATGTCCTGCTCCT
CGGACGCTACTTATCTCAGGCGTTTTCGAAAATGCGTAGAGTGCCCAGAG
TGATCGGTTCTTCCCGCGTGATCTGGAGCTGCATTATCGTGGCGGTGGGG
CTGGCGCTGCTCTCTGCCTCCTTCTGGAAAGACATCTACGTGACCGGGAG
CTATTTCTGGGTAACCAACACCAAAGATCCAAGGTTATCTCGGTGGATCA
GCCTGTCTTTCGTCACAACTCAGGGGTTTGCGGGAGTGCTCATGGCACTC
GCCCTACTGTTCGTAGTCACGGGGGAGAGAAGGAAGAGCCTCCTCGTGTG
CATCAGGACCAGCAAGCGGATGAAATTGTCCAAGGTTATCTCGGTGGATC
AGCCTGTCTTTCGTCACAACTCAGGGGTTTGCGGGAGTGCTCATGGCACT
CGCCCTACTGTTCGTAGTCACGGGGGAGAGAAGGAAGAGCCTCCTCGTGT
GCATCAGGACCAGCAAGCGGATGAAATTGTACTCCATCCTTTCCGCCTTC
GGAACATGCGTCTACCTGTATAATGGCTTCGTTCTACTGTTCGACGAGAC
TCCATCCTTTCCGCCTTCGGAACATGCGTCTACCTGTATAATGGCTTCGT
TCTACTGTTCGACGAGCTATCCCGCCTCGGCTCGGCGAAGAAGGAGCTCA
CCATGGTGGGCTGGTGCTCCAAGTACCTGCACGTCGTTGCCGAAACCCTG
GTGCTCTACTACGCTTTCCAGGTGCATTTTGGTTTTTGACTATCCCGCCT
CGGCTCGGCGAAGAAGGAGCTCACCATGGTGGGCTGGTGCTCCAAGTACC
TGCACGTCGTTGCCGAAACCCTGGTGCTCTACTACGCTTTCCAGGTGCAT
TTTGGTTTTTGA
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