mRNA_E-fasciculatus_F_contig13019.2290.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13019.2290.1
Unique NamemRNA_E-fasciculatus_F_contig13019.2290.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 2.070e-36
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGKAEPELQ 213
            EE NTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLL+FLSSMEDALTT+HLDLIWSSCVGKAEPELQ
Sbjct:  454 EELNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLQFLSSMEDALTTEHLDLIWSSCVGKAEPELQ 524
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A7S2XLE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLE7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.680e-13
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMED--------------ALTTDHLDLIWSSCVGKAE 201
            EE NTLE +LA+W ++N ++E + GDS+HREVV RS  L+RFL+SM D               L   HL L W +C  KA+
Sbjct:  463 EEFNTLEHQLAKWAIDNGIIELVLGDSVHREVVARSTPLIRFLASMCDNGETVDTALHRNTYCLQASHLQLAWKTCTSKAD 543
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: D0MTA4_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTA4_PHYIT)

HSP 1 Score: 72.0 bits (175), Expect = 5.050e-13
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+ + L+++L+ W+VE K++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  425 EDRSRLDYKLSAWVVEKKILEEIFGDRIHREIVSRSALLVKFLAD-SNKLDTHSIDVIWQSCIQK 488
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A225WNK5_9STRA (Ubiquitin-specific protease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNK5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.760e-12
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+H  L++ L+ W+VE  ++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  425 EDHTRLDFILSAWVVEKTILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCIQK 488
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A0W8DNQ4_PHYNI (ER membrane protein complex subunit 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNQ4_PHYNI)

HSP 1 Score: 70.1 bits (170), Expect = 2.370e-12
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+   L++ L+ W+VE K++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  371 EDRTRLDYILSAWVVEKKILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCIQK 434
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A662X9W0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9W0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-12
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+H  L++ L+ W+ E +++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  429 EDHTRLDYILSTWVAEKQIIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHCIDVIWQSCIQK 492
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A329ST13_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329ST13_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-12
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+   L++ L+ W+VE K++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  397 EDRTRLDYILSAWVVEKKILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCIQK 460
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BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: H3HBU9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBU9_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 6.020e-12
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+   L++ L+ W+VE K++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  421 EDLTRLDYILSTWVVEKKILEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTHSIDVIWQSCIQK 484
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A3R7FZP1_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FZP1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.110e-12
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+   L++ L+ W+VE +++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  397 EDQTRLDYILSAWVVEKQIIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTRSIDVIWKSCIQK 460
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Match: A0A3F2RUL0_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUL0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.120e-12
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDALTTDHLDLIWSSCVGK 195
            E+   L++ L+ W+VE +++EEIFGD IHRE+V RSA L++FL+   + L T  +D+IW SC+ K
Sbjct:  400 EDQTRLDYILSAWVVEKQIIEEIFGDRIHREIVSRSALLVKFLAE-SNKLDTRSIDVIWKSCIQK 463
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13019.2290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKZ1_9PHAE2.070e-3695.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2XLE7_9STRA2.680e-1344.44Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
D0MTA4_PHYIT5.050e-1349.23Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]
A0A225WNK5_9STRA1.760e-1249.23Ubiquitin-specific protease n=1 Tax=Phytophthora m... [more]
A0A0W8DNQ4_PHYNI2.370e-1249.23ER membrane protein complex subunit 1 n=1 Tax=Phyt... [more]
A0A662X9W0_9STRA2.400e-1247.69Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A329ST13_9STRA2.400e-1249.23Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
H3HBU9_PHYRM6.020e-1249.23Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7FZP1_9STRA6.110e-1247.69USP domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3F2RUL0_9STRA6.120e-1247.69USP domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13019contigE-fasciculatus_F_contig13019:51..1062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue7.5e-11
Seed eggNOG ortholog4787.PITG_01453T0
KEGG koko:K11840,ko:K11853,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGs3QDKI@4776,COG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.2516677-CDS-E-fasciculatus_F_contig13019:50..1041622927807.2516677-CDS-E-fasciculatus_F_contig13019:50..104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13019 51..104 +
1695995703.2238479-CDS-E-fasciculatus_F_contig13019:50..1041695995703.2238479-CDS-E-fasciculatus_F_contig13019:50..104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13019 51..104 +
1622927807.2705564-CDS-E-fasciculatus_F_contig13019:897..10621622927807.2705564-CDS-E-fasciculatus_F_contig13019:897..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13019 898..1062 +
1695995703.2344582-CDS-E-fasciculatus_F_contig13019:897..10621695995703.2344582-CDS-E-fasciculatus_F_contig13019:897..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13019 898..1062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13019.2290.1prot_E-fasciculatus_F_contig13019.2290.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13019 51..1062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13019.2290.1

>prot_E-fasciculatus_F_contig13019.2290.1 ID=prot_E-fasciculatus_F_contig13019.2290.1|Name=mRNA_E-fasciculatus_F_contig13019.2290.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=73bp
EEHNTLEWELARWIVENKVVEEIFGDSIHREVVGRSAKLLRFLSSMEDAL
TTDHLDLIWSSCVGKAEPELQV*
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mRNA from alignment at E-fasciculatus_F_contig13019:51..1062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13019.2290.1 ID=mRNA_E-fasciculatus_F_contig13019.2290.1|Name=mRNA_E-fasciculatus_F_contig13019.2290.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1012bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13019:51..1062+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGAGCACAACACCCTGGAGTGGGAGCTTGCCCGCTGGATCGTAGAGAA
CAAGGTTCGTATGCATTTTTCTTTTTTTTTACCTTATTGTGGAGTTTTTT
TCCGTGTGTGTGTCTATGCGTTGTCCTTCTTGTTTTTTCGTTTATTGTCT
CTGCTGCCGGTGTTGTGCTTTCCTCGTCCGCTCACCTGCGGTTTGTTTAG
TTATTAGGTGGGGAATATTTTTATAGGTGGTTGGTGACGCAGCGCGAATG
TTTGTTTTGTCGAGGCTGCGTTTGTTGATGTGCTCGTCCAGCCCAGACCT
GCTGGCGATGCTGCCGCTGCTACTGCTGCTGCTGCTGCTGCTTTCGCTAC
CTCATCTGCCGTCTACCATTTGCTGTTGTTGCTTTCGGCGTTGTCTCGAC
GGAGATGCAGAATGCCTTTCGTTCACCCCTAGGCACTAGGCACACCCGTG
TGGCGTCTTGCGTGTTTCCCAAAACAACTAAACAACTTTCTTCGCCCCAA
ACGGCGGGTACCATGACCCCACAGTAGTCTCTCTCGACTCTTTCACGTGT
CGGCACTGCTAGGCCTTAGGCTGACCTGACCACAGCTTCTGTATCGTACC
CAGACTGCCGAGATCGACCGTGATTTGTGTCGTGGCCGACAGTATTTTTT
GCTTTTCCGAGGAAGCATCTAAGTAGCCGTGTCAATGCCATCCTTCCGCT
GTTTGCACCGCTATTTGTTTTTGCTCACTTCGTTTGTTTTTTTTTAATTT
CCGTGTTTTATAGCTCTTTTTGTCTATCTTCCCTTTCCATGTTTCTTTCT
ATAAAACTCTCGAAAAAACAAACGGTTGGATTGGTCCTCGAAAAAAGGTT
GTGGAGGAGATATTCGGAGACAGCATCCACCGAGAAGTCGTCGGTCGATC
CGCCAAGCTGCTGCGATTCCTGAGCAGCATGGAGGATGCCCTCACCACCG
ATCACCTTGACCTCATCTGGAGCTCGTGCGTGGGAAAGGCGGAGCCTGAG
TTGCAGGTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13019:51..1062+

>mRNA_E-fasciculatus_F_contig13019.2290.1 ID=mRNA_E-fasciculatus_F_contig13019.2290.1|Name=mRNA_E-fasciculatus_F_contig13019.2290.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13019:51..1062+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGAGCACAACACCCTGGAGTGGGAGCTTGCCCGCTGGATCGTAGAGAA
CAAGGAGGAGCACAACACCCTGGAGTGGGAGCTTGCCCGCTGGATCGTAG
AGAACAAGGTTGTGGAGGAGATATTCGGAGACAGCATCCACCGAGAAGTC
GTCGGTCGATCCGCCAAGCTGCTGCGATTCCTGAGCAGCATGGAGGATGC
CCTCACCACCGATCACCTTGACCTCATCTGGAGCTCGTGCGTGGGAAAGG
CGGAGCCTGAGTTGCAGGTGTGAGTTGTGGAGGAGATATTCGGAGACAGC
ATCCACCGAGAAGTCGTCGGTCGATCCGCCAAGCTGCTGCGATTCCTGAG
CAGCATGGAGGATGCCCTCACCACCGATCACCTTGACCTCATCTGGAGCT
CGTGCGTGGGAAAGGCGGAGCCTGAGTTGCAGGTGTGA
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