mRNA_E-fasciculatus_F_contig13011.2287.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13011.2287.1
Unique NamemRNA_E-fasciculatus_F_contig13011.2287.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 6.550e-44
Identity = 92/147 (62.59%), Postives = 109/147 (74.15%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDDTTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQRAKNAVPAAELRQRLFGRESVITYHPVW---PT--DGVSS 427
            ATLSFVD TGA++SAF DLTN+LRWVNLWPSESFS+G+ASR++SDE  Q S+EDDTTP  ISQT+TS+V SLLFMGNL L     VII+T H+LVAS VEAYWVAKQRA+  + +  LR+ L   E  I     W   PT  DG S+
Sbjct:  160 ATLSFVDTTGAEESAFSDLTNNLRWVNLWPSESFSEGIASRIISDEPDQPSDEDDTTPSAISQTVTSNVGSLLFMGNLALFSGLLVIIFTSHVLVASVVEAYWVAKQRARKVI-SRSLRRGLSLSEIPIALSGTWSQQPTMDDGSSA 305          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 6.100e-34
Identity = 76/123 (61.79%), Postives = 90/123 (73.17%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDD-------TTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQRAKNAVPAA 349
            ATLSFVD TG + SA   LT +LRWVNLWPS+SFS+GVAS VL +E   TS EDD       +T RGIS T+ SDV S LFMGNL L     VII+++HIL+ASAVEAYW+AKQRA+N +P A
Sbjct:  116 ATLSFVDDTGVEGSALSGLTKNLRWVNLWPSQSFSEGVASWVLCNEPEPTSGEDDDSEEDGDSTQRGISWTVISDVGSFLFMGNLALFAGFFVIIFSVHILLASAVEAYWLAKQRARNEIPRA 238          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: D7G5V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V2_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 8.150e-32
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDD----TTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAK 319
            ATLSFVD+TGA+DSA    TN+LRWVNLWPSE FS+ VASR+ S    QT  EDD    TT RG+S + T+D+ SLLFMGNL L      II++LHILVASA+EA+W+AK
Sbjct:   33 ATLSFVDNTGAEDSALSGFTNALRWVNLWPSERFSEVVASRIFSSNPDQTHGEDDGDDDTTKRGMSVSFTNDLGSLLFMGNLALFAGLLAIIFSLHILVASAIEAHWLAK 142          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: A0A6H5L250_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L250_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.730e-30
Identity = 68/120 (56.67%), Postives = 82/120 (68.33%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDD------------TTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQR 325
            ATLSFVD+TGA+DSA     N LRWVNLWPSESFS+GVASR+   E  + + +DD            TT RGIS + T D+ SLLFMGNL L     VII++LHILVAS +EA+W+AK R
Sbjct:   13 ATLSFVDNTGAEDSALSAFANVLRWVNLWPSESFSEGVASRIFPSEPDKINGDDDXXXXXXXXXXXXTTKRGISVSFTHDLGSLLFMGNLALFAGLLVIIFSLHILVASGIEAHWLAKVR 132          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: A0A6H5JZX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.290e-29
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDD--------TTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQRAKNAVPAAELRQRL 367
            ATLS VD+TGA+DSA     N LRWVNLWPSESFS+GVASR+   E  +   EDD        TT RGIS + T D+ SLLFMGNL L     VII++LHILVASA+EA+W+AK R    +   E  + L
Sbjct:   35 ATLSLVDNTGAEDSALSGFANILRWVNLWPSESFSEGVASRIFPSEPDKIYGEDDGXXXXXXXTTKRGISVSFTHDLGSLLFMGNLALFAGLLVIIFSLHILVASAIEAHWLAKVRNGPTLSCREASRAL 164          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: A0A6H5KBY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 7.510e-29
Identity = 68/120 (56.67%), Postives = 82/120 (68.33%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDD------------TTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQR 325
            ATLSFVD+TGA+DSA     N LRWVNLWPSESFS+GVASR+   E  + + +DD            TT RGIS + T D+ SLLFMGNL L     VII++LHILVAS +EA+W+AK R
Sbjct:   75 ATLSFVDNTGAEDSALSAFANVLRWVNLWPSESFSEGVASRIFPSEPDKINGDDDXXXXXXXXXXXXTTKRGISVSFTHDLGSLLFMGNLALFAGLLVIIFSLHILVASGIEAHWLAKVR 194          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 6.230e-28
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 2
Query:   68 LRWVNLWPSESFSDGVASRVLSDE-------FGQTSEEDDTTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQRAKNAVPAA 349
            +RWVNLWPS+SFS+GVASRVLS+E        G + E+ D T RGIS T+ SDV S LFMGNL L     + I++LHILVASA+EAYW+AKQRA+N VP A
Sbjct:    6 IRWVNLWPSQSFSEGVASRVLSNEPESTAGEDGDSEEDGDATQRGISWTVISDVGSFLFMGNLALFAGFLLTIFSLHILVASAIEAYWLAKQRARNEVPRA 106          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: A0A6H5KD37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD37_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.190e-27
Identity = 74/167 (44.31%), Postives = 96/167 (57.49%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDD------------TTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAK----QRAKNAVPAAELR--QRLFGRESVITYHPVWPTDGVSSYILSGQQ 448
            ATLS VD+TGA+DSA     N LRWVNLWPSESFS+GVASR+   E  + + +DD            TT RGIS + T D+ SLLFMGNL L      II++LHILVASA+EA W+AK     +  +     E R  Q   G+  ++T+ P         ++L  Q+
Sbjct:  217 ATLSLVDNTGAEDSALSAFANVLRWVNLWPSESFSEGVASRIFPSEPDKINGDDDXXXXXXXXXXXXTTKRGISVSFTHDLGSLLFMGNLALFAALLAIIFSLHILVASAIEARWLAKIVTIAKPNDGGMGNERRATQSCNGQRMLLTHPPTNKLPSCLCFVLYKQR 383          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.250e-18
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEEDDTTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQRAKNAVPAAELR 358
            ATLS VD TGA+DS   +LT +LRWVNLWP +S       R  S    +  ++D +   GI  T  SD+ +L+F+GN+ L     + I  +HI++ SAVEAYW++K+RA   +  A+ R
Sbjct:   64 ATLSLVDSTGAEDSLLSELTQNLRWVNLWPPDSVG-----RTFSSGGERLFQQDGSRACGIEPTSASDIGALVFLGNIGLFTSLLLGIVVIHIVLVSAVEAYWLSKERAMEELTKAQRR 177          
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.890e-17
Identity = 51/132 (38.64%), Postives = 70/132 (53.03%), Query Frame = 2
Query:    2 ATLSFVDHTGAKDSAFYDLTNSLRWVNLWPSESFSDGVASRVLSDEFGQTSEE-------------DDTTPRGISQTLTSDVSSLLFMGNLVLXXXXXVIIYTLHILVASAVEAYWVAKQRAKNAVPAAELR 358
            ATLS V +TG +DS  YD  N+LRW+NLWP  SF+       +  E  Q  E+                   G+    + D+SS +F+GNLVL      II+ +HI VAS +EAYW+AK+ A+  V  A+ R
Sbjct: 2200 ATLSLVGNTGTEDSKLYDFANNLRWINLWPPASFARSFTPASMYGELDQEGEDAXXXXXXXXXXXXXXXXXEGVENEESGDLSSGVFVGNLVLFLIILFIIFLIHITVASGIEAYWLAKRGAEKHVARAQRR 2331          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13011.2287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5J9C2_9PHAE6.550e-4462.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTJ3_9PHAE6.100e-3461.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5V2_ECTSI8.150e-3261.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L250_9PHAE5.730e-3056.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZX1_9PHAE2.290e-2954.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBY1_9PHAE7.510e-2956.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F3_ECTSI6.230e-2861.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD37_9PHAE3.190e-2744.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L9_ECTSI7.250e-1842.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN89_ECTSI2.890e-1738.64Liver stage antigen 3 n=1 Tax=Ectocarpus siliculos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13011contigE-fasciculatus_F_contig13011:367..1319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size486
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13011.2287.1prot_E-fasciculatus_F_contig13011.2287.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13011 402..871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.0484054-UTR-E-fasciculatus_F_contig13011:366..4011622927807.0484054-UTR-E-fasciculatus_F_contig13011:366..401Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13011 367..401 -
1695995703.107522-UTR-E-fasciculatus_F_contig13011:366..4011695995703.107522-UTR-E-fasciculatus_F_contig13011:366..401Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13011 367..401 -
1622927807.081037-UTR-E-fasciculatus_F_contig13011:871..10221622927807.081037-UTR-E-fasciculatus_F_contig13011:871..1022Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13011 872..1022 -
1695995703.1354854-UTR-E-fasciculatus_F_contig13011:871..10221695995703.1354854-UTR-E-fasciculatus_F_contig13011:871..1022Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13011 872..1022 -
1622927807.094504-UTR-E-fasciculatus_F_contig13011:1247..13191622927807.094504-UTR-E-fasciculatus_F_contig13011:1247..1319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13011 1248..1319 -
1695995703.1438096-UTR-E-fasciculatus_F_contig13011:1247..13191695995703.1438096-UTR-E-fasciculatus_F_contig13011:1247..1319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13011 1248..1319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.0589015-CDS-E-fasciculatus_F_contig13011:401..5331622927807.0589015-CDS-E-fasciculatus_F_contig13011:401..533Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 402..533 -
1695995703.117007-CDS-E-fasciculatus_F_contig13011:401..5331695995703.117007-CDS-E-fasciculatus_F_contig13011:401..533Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 402..533 -
1622927807.070373-CDS-E-fasciculatus_F_contig13011:775..8711622927807.070373-CDS-E-fasciculatus_F_contig13011:775..871Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 776..871 -
1695995703.1260688-CDS-E-fasciculatus_F_contig13011:775..8711695995703.1260688-CDS-E-fasciculatus_F_contig13011:775..871Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 776..871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13011.2287.1

>prot_E-fasciculatus_F_contig13011.2287.1 ID=prot_E-fasciculatus_F_contig13011.2287.1|Name=mRNA_E-fasciculatus_F_contig13011.2287.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
MGNLVLFMGLLVIIYTLHILVASAVEAYWVAKQRAKNAVPAAELRQRLFG
RESVITYHPVWPTDGVSSYILSGQQ*
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mRNA from alignment at E-fasciculatus_F_contig13011:367..1319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13011.2287.1 ID=mRNA_E-fasciculatus_F_contig13011.2287.1|Name=mRNA_E-fasciculatus_F_contig13011.2287.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=953bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13011:367..1319- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAACTCTGTCGTTCGTGGACCATACAGGAGCGAAGGATTCTGCCTTCT ATGATCTAACGAACAGCCTCAGGTCAGGCCAATAACTCCACGTCACCCAG TTGGATCGAGTAGCATCAACTGCGTTCGTAGAGGAGCAGATGCGACAGGC ACGTGCTTCCAGGAATCCAACCAAAACTCAGAGCTAACGATGCGATCTGG AAGCCACCTGACCGAACGAGCCCCGTTGTAGACGAACGCAACAACCTCAT ATCATTTTCGCAGTTTCTGTCGTGTTTCCGTCGCGTGCATGGACAAGGTG GGTAAATTTGTGGCCCTCGGAGAGCTTCTCTGATGGTGTAGCATCACGGG TTTTGTCGGACGAGTTTGGCCAAACTTCCGAAGAAGATGATACAACGCCT CGAGGAATCTCCCAGACACTCACCAGCGATGTTAGTTCTCTGTTATTCAT GGGGAACCTCGTGCTGTTTATGGGGCTCCTTGTGATCATCTATACCTTGC ACATCTTGGTGGCGTCGGCGGTCGAGGCGTACTGGGTGGCAAAGGTGAGA AACTGGGCTTCGAGCGTAGCGAAGCGTTCCCAACGAAGTGAGCACATCTG ATGCGCAAACTACAGTGCACGAGTGTTGTACGTGGTAATGACAGACCGTT GATTTCTAGGATGGCTGTGATGCCAAGACAGTGGAGTTAAAGCTTCAGTT CCACCGAATCACAGGCACGATATGTACACGCGTCACCAACCCGAATGTTT AATCTTCCCTCCTGTACTTGTTGTGAATGTGCCCAGCAACGGGCGAAGAA TGCGGTCCCAGCAGCCGAACTTCGACAACGGCTCTTCGGGAGGGAATCAG TCATCACGTATCATCCCGTCTGGCCAACTGATGGGGTCTCAAGCTACATC CTCTCGGGACAACAGTGACGGAGGGGATTCAAAGACCGACGAAGAAGGGG GGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13011:367..1319-

>mRNA_E-fasciculatus_F_contig13011.2287.1 ID=mRNA_E-fasciculatus_F_contig13011.2287.1|Name=mRNA_E-fasciculatus_F_contig13011.2287.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13011:367..1319- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGAACCTCGTGCTGTTTATGGGGCTCCTTGTGATCATCTATACCTT
GCACATCTTGGTGGCGTCGGCGGTCGAGGCGTACTGGGTGGCAAAGATGG
GGAACCTCGTGCTGTTTATGGGGCTCCTTGTGATCATCTATACCTTGCAC
ATCTTGGTGGCGTCGGCGGTCGAGGCGTACTGGGTGGCAAAGCAACGGGC
GAAGAATGCGGTCCCAGCAGCCGAACTTCGACAACGGCTCTTCGGGAGGG
AATCAGTCATCACGTATCATCCCGTCTGGCCAACTGATGGGGTCTCAAGC
TACATCCTCTCGGGACAACAGTGACAACGGGCGAAGAATGCGGTCCCAGC
AGCCGAACTTCGACAACGGCTCTTCGGGAGGGAATCAGTCATCACGTATC
ATCCCGTCTGGCCAACTGATGGGGTCTCAAGCTACATCCTCTCGGGACAA
CAGTGA
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