mRNA_E-fasciculatus_F_contig13011.2288.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13011.2288.1
Unique NamemRNA_E-fasciculatus_F_contig13011.2288.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.100e-32
Identity = 90/153 (58.82%), Postives = 106/153 (69.28%), Query Frame = 1 
Query:   28 ADGSVTPTPEAASTVAPSIAAAFQTLEPGSTASPEATNTSVRALTAAPTVVPTSIDEVQEVVVSTAAAVSIASVAGVVVSSVGTVAGGAASAXXXXXXXXXXXXXAAHGTIRSPSATMAFVLTSQLQFQATLSFVDHTGAKDSAFYDLTNSLR 486
            A G++ PT E AST+APSIAA  QT   G TASPEA +   R  TAAPT+ PT + EVQEV VS A+ +S ASV GV+ S+V TV GGA+S+             A   T RSPSATMAFVLTSQ+QF ATLSFVD TGA++SAF DLTN+LR
Sbjct:   35 AGGTMLPTSEFASTLAPSIAAVIQTPGLGRTASPEAVSIGERGFTAAPTMAPTLVAEVQEVAVSAASVMSTASVVGVMTSTVVTVLGGASSSMVAGGTAQA----ATQSTCRSPSATMAFVLTSQIQFLATLSFVDTTGAEESAFSDLTNNLR 183
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BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Match: A0A6H5KBY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.760e-12
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:  196 EVQEVVVSTAAAVSIASVAGVVVSSVGTVAGGAASAXXXXXXXXXXXXXAAHGTIRSPSATMAFVLTSQLQFQATLSFVDHTGAKDSAFYDLTNSLR 486
            EVQE  +  A  +S ASV GVV S+V TVA G+ S              +   T R+PS+TMA +LTSQ+QF ATLSFVD+TGA+DSA     N LR
Sbjct:    3 EVQEAAIGAAQVISTASVGGVVASTVATVASGSVSGASSVMAGGAGQA-STQSTFRNPSSTMALLLTSQVQFLATLSFVDNTGAEDSALSAFANVLR 98
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BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.570e-10
Identity = 58/97 (59.79%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:  196 EVQEVVVSTAAAVSIASVAGVVVSSVGTVAGGAASAXXXXXXXXXXXXXAAHGTIRSPSATMAFVLTSQLQFQATLSFVDHTGAKDSAFYDLTNSLR 486
            EVQEV  S AAA+S  SVAGVV SSV T        XXXXXXXX     A   T R+PS+TMA VLTSQ+QF ATLSFVD TG + SA   LT +LR
Sbjct:   44 EVQEVAASAAAALSTVSVAGVVASSVVTXXXXXXX-XXXXXXXXGTGQAATQSTFRNPSSTMALVLTSQIQFLATLSFVDDTGVEGSALSGLTKNLR 139
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BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Match: D7G5V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.450e-8
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  355 TIRSPSATMAFVLTSQLQFQATLSFVDHTGAKDSAFYDLTNSLR 486
            T R+PS+TMA VLTSQ+QF ATLSFVD+TGA+DSA    TN+LR
Sbjct:   13 TFRNPSSTMALVLTSQIQFLATLSFVDNTGAEDSALSGFTNALR 56
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BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Match: A0A6H5JZX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.200e-6
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  355 TIRSPSATMAFVLTSQLQFQATLSFVDHTGAKDSAFYDLTNSLR 486
            T R+PS+TMAF+LTSQ+QF ATLS VD+TGA+DSA     N LR
Sbjct:   15 TFRNPSSTMAFLLTSQVQFIATLSLVDNTGAEDSALSGFANILR 58
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BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Match: A0A6H5KD37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD37_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.350e-6
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  355 TIRSPSATMAFVLTSQLQFQATLSFVDHTGAKDSAFYDLTNSLR 486
            T R+PS+TMA +LTSQ+QF ATLS VD+TGA+DSA     N LR
Sbjct:  197 TFRNPSSTMALLLTSQVQFLATLSLVDNTGAEDSALSAFANVLR 240
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BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.620e-5
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  349 HGTIRSPSATMAFVLTSQLQFQATLSFVDHTGAKDSAFYDLTNSLR 486
            H ++R+PS T+A +L +Q+QF ATLS VD TGA+DS   +LT +LR
Sbjct:   42 HVSVRAPSVTIAVLLLTQIQFLATLSLVDSTGAEDSLLSELTQNLR 87
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13011.2288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5J9C2_9PHAE6.100e-3258.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBY1_9PHAE9.760e-1249.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTJ3_9PHAE5.570e-1059.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5V2_ECTSI1.450e-870.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZX1_9PHAE1.200e-665.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD37_9PHAE7.350e-663.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L9_ECTSI5.620e-554.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13011contigE-fasciculatus_F_contig13011:1235..2965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size498
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13011.2288.1prot_E-fasciculatus_F_contig13011.2288.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13011 1235..2965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.9694183-CDS-E-fasciculatus_F_contig13011:1234..13991622927806.9694183-CDS-E-fasciculatus_F_contig13011:1234..1399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 1235..1399 -
1695995703.0686378-CDS-E-fasciculatus_F_contig13011:1234..13991695995703.0686378-CDS-E-fasciculatus_F_contig13011:1234..1399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 1235..1399 -
1622927806.9813683-CDS-E-fasciculatus_F_contig13011:1592..17271622927806.9813683-CDS-E-fasciculatus_F_contig13011:1592..1727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 1593..1727 -
1695995703.0783029-CDS-E-fasciculatus_F_contig13011:1592..17271695995703.0783029-CDS-E-fasciculatus_F_contig13011:1592..1727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 1593..1727 -
1622927806.9944415-CDS-E-fasciculatus_F_contig13011:1896..20391622927806.9944415-CDS-E-fasciculatus_F_contig13011:1896..2039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 1897..2039 -
1695995703.0874422-CDS-E-fasciculatus_F_contig13011:1896..20391695995703.0874422-CDS-E-fasciculatus_F_contig13011:1896..2039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 1897..2039 -
1622927807.0069401-CDS-E-fasciculatus_F_contig13011:2910..29651622927807.0069401-CDS-E-fasciculatus_F_contig13011:2910..2965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 2911..2965 -
1695995703.0972097-CDS-E-fasciculatus_F_contig13011:2910..29651695995703.0972097-CDS-E-fasciculatus_F_contig13011:2910..2965Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13011 2911..2965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13011.2288.1

>prot_E-fasciculatus_F_contig13011.2288.1 ID=prot_E-fasciculatus_F_contig13011.2288.1|Name=mRNA_E-fasciculatus_F_contig13011.2288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp
MAVTTPTATADGSVTPTPEAASTVAPSIAAAFQTLEPGSTASPEATNTSV
RALTAAPTVVPTSIDEVQEVVVSTAAAVSIASVAGVVVSSVGTVAGGAAS
ASSVSLVAGGTAQAAAHGTIRSPSATMAFVLTSQLQFQATLSFVDHTGAK
DSAFYDLTNSLRSGQ*
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mRNA from alignment at E-fasciculatus_F_contig13011:1235..2965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13011.2288.1 ID=mRNA_E-fasciculatus_F_contig13011.2288.1|Name=mRNA_E-fasciculatus_F_contig13011.2288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1731bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13011:1235..2965- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGTGACGACTCCGACAGCGACAGCCGATGGAAGCGTTACACCTAC
TCCAGGTGCCTCCTACATGCCATCCCGTATGCCATTCCGTTCCCAATGAT
GCACCTTGTCCCAATTTTTCATCTTCAAGAGCGCTGCTATCCACACACTC
CGACCGAACCCTCAGGTTGGCGGTGCTATGTACCGAACCGCGCGGTACCG
CCCCAGCTACAGAGTCGTGTGCGGAAGCAACGAAACCCCTATTCAGCGGC
AAATGCTGTCACCGCTGCCTCGCTAGACACGCTTCGGGGGAATTTGCCTT
CCAACGGAATACTTCTGTGTCGGACCAACGTTAACAACATGCTGGGGGCC
GTAGTTTACTTGAGCCAACAAATGGTGCCCTACCTTCGACGTGCATCTGT
CTTGTTGGCCGGTGTGTTTCGATGTTCGGGAAGGTTTGCAGGATTGTCAC
GGGCGATCGCAAAACATTTTCGTGTTCCTCACGGGGTCGTTGTTTTTTTG
TCGTCTCCAGTGGTTGGTGTGTTGAGCCCTGCTTCTCCTCTCTTGACAGT
CTACTGCTCGATTCACGCAACTGATGGACGCCTTCAGGCCCGATTTGTTT
TTGCTGTGGCCTCGGGCGCAGAACCGTTAAATATCCACCATCATGCGTGA
TCATTTGAATGTACGTGTCACTCGCAGGCCTTTTGCTTGAGATTTTGGAT
GTCTACCCAACCTCGGTCACTTACGGAGATAATGCACGGCATAAGGTATC
CTCCGAACCAATCCAATAGAACTCTTGGCTAAGCACTCTATTGGTCTTGC
TGGTTAGACGCTGCACTTTCGTAGATAGCCATGTCGCCAAGGCACGTGTT
CAGTCACCTTGTCTCTCATTCTTACGTTGTACTCATACTTCCCCACAACG
CTTTCTCGAATCCCCTTACAACCCAGAAGCGGCCTCAACAGTAGCTCCGT
CGATTGCAGCTGCATTTCAGACCCTCGAACCTGGGAGCACGGCTAGCCCT
GAAGCGACGAACACAAGCGTGCGAGCTCTAACAGCAGCTCCCACGGTTGT
ACCCACTTCTATTGACGAGGTAAACGATCAAACTTGCTAAGGTGGCCATT
CGACCAGAAATACATCTACTGGTAGGCCGCAGACCAAACCATGGTGACAC
AATTGCTCTTGGTGCGTAAACTCGAAGGGCCGTATGCACCGTTTCCTGAT
CACTGGCTTGGTACCGCCTGTCGCGCGTTCTATTGCAGGTCCAGGAGGTC
GTTGTCAGTACTGCCGCTGCCGTGTCCATCGCCTCCGTTGCGGGTGTGGT
TGTGTCTTCCGTGGGCACGGTCGCCGGTGGTGCGGCCAGCGCATCATCAG
TGTCACTGGTTGCGGGGGGAACGGTATGTCGCGGTTCATTTGGAAACCCA
CCTACAGTACTGGTGTGCCATATGATGCTTGATTGCATGGAAGACCCAAT
CTACTCATTCATGGTAGCAGTGCTGATTCTTGATAGTTTATGCTTCCCGC
GAACTCGATCTCCTCACGATCCTGTGCTTCTACCCTGCTCGCTGTCTTCG
TGCTGATTCTCCAAAGGCCCAGGCAGCGGCGCATGGCACGATCCGCAGCC
CTTCGGCGACGATGGCGTTCGTCCTCACCTCACAGTTACAGTTTCAAGCA
ACTCTGTCGTTCGTGGACCATACAGGAGCGAAGGATTCTGCCTTCTATGA
TCTAACGAACAGCCTCAGGTCAGGCCAATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13011:1235..2965-

>mRNA_E-fasciculatus_F_contig13011.2288.1 ID=mRNA_E-fasciculatus_F_contig13011.2288.1|Name=mRNA_E-fasciculatus_F_contig13011.2288.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13011:1235..2965- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGTGACGACTCCGACAGCGACAGCCGATGGAAGCGTTACACCTAC
TCCAGATGGCAGTGACGACTCCGACAGCGACAGCCGATGGAAGCGTTACA
CCTACTCCAGAAGCGGCCTCAACAGTAGCTCCGTCGATTGCAGCTGCATT
TCAGACCCTCGAACCTGGGAGCACGGCTAGCCCTGAAGCGACGAACACAA
GCGTGCGAGCTCTAACAGCAGCTCCCACGGTTGTACCCACTTCTATTGAC
GAGAAGCGGCCTCAACAGTAGCTCCGTCGATTGCAGCTGCATTTCAGACC
CTCGAACCTGGGAGCACGGCTAGCCCTGAAGCGACGAACACAAGCGTGCG
AGCTCTAACAGCAGCTCCCACGGTTGTACCCACTTCTATTGACGAGGTCC
AGGAGGTCGTTGTCAGTACTGCCGCTGCCGTGTCCATCGCCTCCGTTGCG
GGTGTGGTTGTGTCTTCCGTGGGCACGGTCGCCGGTGGTGCGGCCAGCGC
ATCATCAGTGTCACTGGTTGCGGGGGGAACGGTCCAGGAGGTCGTTGTCA
GTACTGCCGCTGCCGTGTCCATCGCCTCCGTTGCGGGTGTGGTTGTGTCT
TCCGTGGGCACGGTCGCCGGTGGTGCGGCCAGCGCATCATCAGTGTCACT
GGTTGCGGGGGGAACGGCCCAGGCAGCGGCGCATGGCACGATCCGCAGCC
CTTCGGCGACGATGGCGTTCGTCCTCACCTCACAGTTACAGTTTCAAGCA
ACTCTGTCGTTCGTGGACCATACAGGAGCGAAGGATTCTGCCTTCTATGA
TCTAACGAACAGCCTCAGGTCAGGCCAATAAGCCCAGGCAGCGGCGCATG
GCACGATCCGCAGCCCTTCGGCGACGATGGCGTTCGTCCTCACCTCACAG
TTACAGTTTCAAGCAACTCTGTCGTTCGTGGACCATACAGGAGCGAAGGA
TTCTGCCTTCTATGATCTAACGAACAGCCTCAGGTCAGGCCAATAA
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