mRNA_E-fasciculatus_F_contig13005.2284.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A835Z5R8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.080e-11 Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 3
Query: 492 YTSYRRPXXXXXXLAAVTMLVVGTVMTALGACHVW---KGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
Y YR PXXXXXX MLV G+ ++ GA +W + R LLIGGIL LPGSYAS NL GAY+GWPG+ Y +IPS
Sbjct: 57 YARYRTPXXXXXXXXXXLMLVGGSALSLAGAA-LWLLQPAERERAYALLLIGGILFLPGSYASVNLFGAYMGWPGYSYDAIPS 138
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: W7U4P6_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4P6_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.290e-11 Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 3
Query: 504 RRPXXXXXXLAAVTMLVVGTVMTALGACHVWKGD---SSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
R PXXXXXXLAAV MLV GT++ G W D RG +++G +L +PGSYASF L GA+ GWPG+ Y+ IPS
Sbjct: 52 RGPXXXXXXLAAVLMLVTGTILLCTGLGIRWHTDPKEKERGLAMIILGSLLFIPGSYASFQLFGAWAGWPGYSYAYIPS 130
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A7S2G7J8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7J8_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.310e-8 Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 3
Query: 504 RRPXXXXXXLAAVTMLVVGTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
RRPXXXXXX LV GT +T LG + + D +G +++G +LL PG+YAS++L GAY WPGF YS +PS
Sbjct: 27 RRPXXXXXXXXXXXXLVGGTSVTILGLTMMLE-DFDKGSSLVILGALLLCPGTYASYHLYGAYNRWPGFSYSQVPS 101
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A6G0WPK7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPK7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.700e-8 Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 3
Query: 531 LAAVTMLVVGTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
+AAVT+ +G+V+ + + D RG ++G I +PGSYA+ L GAY GWPG+DYS +PS
Sbjct: 42 MAAVTLFTLGSVLLYV-STRFGLDDEQRGLSFFILGLITFIPGSYATTQLYGAYKGWPGYDYSQVPS 107
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A485KJL7_9STRA (Transmembrane protein 230 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJL7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 9.280e-8 Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 3
Query: 531 LAAVTMLVVGTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
+AA+T+LVVGTV+ LG +G G H+ +G I +PGSYA+ L GAY GW G+ + ++PS
Sbjct: 86 IAALTLLVVGTVLLVLGFVSTAEG---HGWSHVFLGMIAFIPGSYATVQLYGAYRGWRGYAFHNLPS 149
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A1V9YR85_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR85_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.120e-7 Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 3
Query: 531 LAAVTMLVVGTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
LAAV + +G+V+ + G+ RG ++G I +PGSYA+ L GAY GWPG+DYS +PS
Sbjct: 47 LAAVVLFTIGSVLLYVSTLFGLDGER-RGLSFFVLGLITFIPGSYATTQLYGAYKGWPGYDYSQLPS 112
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: W4GJ87_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJ87_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 6.070e-7 Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 3
Query: 534 AAVTMLVVGTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
AA+ +LVVG V+ LG +G+ G HL +G I +PGSYA+F L GAY GW G+ + ++PS
Sbjct: 102 AALLLLVVGIVLLILGFVSAVEGN---GVSHLFLGVIAFIPGSYATFQLYGAYQGWRGYAFHNLPS 164
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A6G0WPL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPL0_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 8.820e-7 Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 3
Query: 531 LAAVTMLVVGTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
+AA+++L+VG V+ +G +G G H+ +G I +PGSYA+F L GAY GW G+++ ++PS
Sbjct: 86 VAALSLLIVGIVLLVMGFISSVEG---HGLSHVFLGVIAFIPGSYATFQLYGAYQGWRGYEFHNLPS 149
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A024TRT0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRT0_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.000e-6 Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 3
Query: 534 AAVTMLVVGTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
AA+ +L+VG V+ LG +G G HL +G I +PGSYA+F L GAY GW G+ + ++PS
Sbjct: 94 AAILLLLVGIVLLILGLASAVEGG---GLSHLFLGVIAFIPGSYATFQLYGAYQGWRGYAFHNLPS 156
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Match: A0A7S2SI28_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SI28_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.650e-6 Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 3
Query: 558 GTVMTALGACHVWKGDSSRGGHHLLIGGILLLPGSYASFNLLGAYLGWPGFDYSSIPS 731
G + LG + K D+ RG + +++GG+LL PG YAS L GAY GW G+ Y+ +PS
Sbjct: 60 GVALLILGIIFMLKIDAKRGLNLIILGGMLLCPGCYASTILFGAYRGWRGYRYTQVPS 117 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13005.2284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13005.2284.1 >prot_E-fasciculatus_F_contig13005.2284.1 ID=prot_E-fasciculatus_F_contig13005.2284.1|Name=mRNA_E-fasciculatus_F_contig13005.2284.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=181bp FLPPPIPRRLPTILRGCCLSLLQYHLHRLVRYRSRERNCTAARLHGCTAAback to top mRNA from alignment at E-fasciculatus_F_contig13005:81..2398+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13005.2284.1 ID=mRNA_E-fasciculatus_F_contig13005.2284.1|Name=mRNA_E-fasciculatus_F_contig13005.2284.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13005:81..2398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13005:81..2398+ >mRNA_E-fasciculatus_F_contig13005.2284.1 ID=mRNA_E-fasciculatus_F_contig13005.2284.1|Name=mRNA_E-fasciculatus_F_contig13005.2284.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13005:81..2398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |