mRNA_E-fasciculatus_F_contig1300.2281.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1300.2281.1
Unique NamemRNA_E-fasciculatus_F_contig1300.2281.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1300.2281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1300contigE-fasciculatus_F_contig1300:1591..1916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.0771406-CDS-E-fasciculatus_F_contig1300:1590..19081622927806.0771406-CDS-E-fasciculatus_F_contig1300:1590..1908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1300 1591..1908 +
1695995702.685418-CDS-E-fasciculatus_F_contig1300:1590..19081695995702.685418-CDS-E-fasciculatus_F_contig1300:1590..1908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1300 1591..1908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.095386-UTR-E-fasciculatus_F_contig1300:1908..19161622927806.095386-UTR-E-fasciculatus_F_contig1300:1908..1916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1300 1909..1916 +
1695995702.6963928-UTR-E-fasciculatus_F_contig1300:1908..19161695995702.6963928-UTR-E-fasciculatus_F_contig1300:1908..1916Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1300 1909..1916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1300.2281.1prot_E-fasciculatus_F_contig1300.2281.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1300 1591..1908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1300.2281.1

>prot_E-fasciculatus_F_contig1300.2281.1 ID=prot_E-fasciculatus_F_contig1300.2281.1|Name=mRNA_E-fasciculatus_F_contig1300.2281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
AEVAVEEVSVCNLAWRYLCAVFSRLGYRGHSGWCSRLFLMMMMEISARGW
PRRRERKQPVLSCFGSNLFNMHTYICSLQFCVVYCFVLRPFWGHFGDTYC
NSNAY*
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mRNA from alignment at E-fasciculatus_F_contig1300:1591..1916+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1300.2281.1 ID=mRNA_E-fasciculatus_F_contig1300.2281.1|Name=mRNA_E-fasciculatus_F_contig1300.2281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1300:1591..1916+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGAGGTTGCAGTCGAGGAGGTGAGTGTGTGTAACCTCGCTTGGAGATA
TCTTTGTGCCGTGTTTTCGCGGCTGGGGTATCGGGGACATAGCGGATGGT
GTTCTAGACTATTTCTTATGATGATGATGGAGATATCAGCGAGAGGGTGG
CCGCGTAGAAGAGAGCGCAAGCAGCCCGTTCTTTCATGTTTTGGGAGCAA
TCTTTTCAACATGCATACGTACATTTGCAGTCTTCAGTTCTGCGTAGTCT
ACTGCTTTGTCCTACGGCCCTTTTGGGGACACTTTGGGGACACATATTGT
AACTCAAATGCCTATTAGTTACCGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1300:1591..1916+

>mRNA_E-fasciculatus_F_contig1300.2281.1 ID=mRNA_E-fasciculatus_F_contig1300.2281.1|Name=mRNA_E-fasciculatus_F_contig1300.2281.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1300:1591..1916+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGAGGTTGCAGTCGAGGAGGTGAGTGTGTGTAACCTCGCTTGGAGATA
TCTTTGTGCCGTGTTTTCGCGGCTGGGGTATCGGGGACATAGCGGATGGT
GTTCTAGACTATTTCTTATGATGATGATGGAGATATCAGCGAGAGGGTGG
CCGCGTAGAAGAGAGCGCAAGCAGCCCGTTCTTTCATGTTTTGGGAGCAA
TCTTTTCAACATGCATACGTACATTTGCAGTCTTCAGTTCTGCGTAGTCT
ACTGCTTTGTCCTACGGCCCTTTTGGGGACACTTTGGGGACACATATTGT
AACTCAAATGCCTATTAGGCCGAGGTTGCAGTCGAGGAGGTGAGTGTGTG
TAACCTCGCTTGGAGATATCTTTGTGCCGTGTTTTCGCGGCTGGGGTATC
GGGGACATAGCGGATGGTGTTCTAGACTATTTCTTATGATGATGATGGAG
ATATCAGCGAGAGGGTGGCCGCGTAGAAGAGAGCGCAAGCAGCCCGTTCT
TTCATGTTTTGGGAGCAATCTTTTCAACATGCATACGTACATTTGCAGTC
TTCAGTTCTGCGTAGTCTACTGCTTTGTCCTACGGCCCTTTTGGGGACAC
TTTGGGGACACATATTGTAACTCAAATGCCTATTAG
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