mRNA_E-fasciculatus_F_contig130.2278.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig130.2278.1 vs. uniprot
Match: D7FJ75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ75_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.890e-8 Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 2
Query: 1187 REETAAEREAYLYSTGHLGVYVHVGDDQLCETAARNGHLEILQWARRIGCPWE 1345
R AE++A L ++G+ G YV VGD+QLC AA GHLE+LQWAR GCPW+
Sbjct: 8 RARREAEKQAVLLASGNPGWYVDVGDEQLCRKAASIGHLEVLQWARNNGCPWD 60
BLAST of mRNA_E-fasciculatus_F_contig130.2278.1 vs. uniprot
Match: A0A6H5KS38_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS38_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.320e-5 Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 2
Query: 1247 YVHVGDDQLCETAARNGHLEILQWARRIGCPWEAST 1354
YV VGD+QLCE AA+ GHL +LQWAR GCPW+ T
Sbjct: 31 YVRVGDEQLCEEAAKGGHLGVLQWARNNGCPWDKET 66
BLAST of mRNA_E-fasciculatus_F_contig130.2278.1 vs. uniprot
Match: D7FT06_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT06_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 4.360e-5 Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 2
Query: 1181 APREETAAEREAYLYSTGHLGVYVHVGDDQLCETAARNGHLEILQWARRIGCPW 1342
A AAEREA L ++G Y +G+ +C TAA+NG+L +LQWAR GCPW
Sbjct: 301 ARERRAAAEREAVLLASG----YREIGEKDICSTAAKNGYLHVLQWARTNGCPW 350 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig130.2278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig130.2278.1 >prot_E-fasciculatus_F_contig130.2278.1 ID=prot_E-fasciculatus_F_contig130.2278.1|Name=mRNA_E-fasciculatus_F_contig130.2278.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=577bp MPDPQQRLQQQNPPAALGATADDSRWPFGGVLGMLSAMVILPVATIAKFRback to top mRNA from alignment at E-fasciculatus_F_contig130:13315..24259- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig130.2278.1 ID=mRNA_E-fasciculatus_F_contig130.2278.1|Name=mRNA_E-fasciculatus_F_contig130.2278.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=10945bp|location=Sequence derived from alignment at E-fasciculatus_F_contig130:13315..24259- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig130:13315..24259- >mRNA_E-fasciculatus_F_contig130.2278.1 ID=mRNA_E-fasciculatus_F_contig130.2278.1|Name=mRNA_E-fasciculatus_F_contig130.2278.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig130:13315..24259- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |