mRNA_E-fasciculatus_F_contig13.2273.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13.2273.1
Unique NamemRNA_E-fasciculatus_F_contig13.2273.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13.2273.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.950e-64
Identity = 104/110 (94.55%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSSLGGGGGDSAPLDAVLEALVGFFVCVFGVLYSADALLPAKGTAGGGKSLDSAESTREFEVFEHRGRSLRRRVEGQR 330
            MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSS+LGGGGGDSAPLDA LEALVGFFVCVFGVLYSADALLP KG AGGGKSLDSAESTREFEVFEHRGRSLRRRV  QR
Sbjct:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVASQR 110
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BLAST of mRNA_E-fasciculatus_F_contig13.2273.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.800e-27
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSSLGGGGGDSAPLDAVLEALVGFFVCVFGVLYSADALLPAKGTAGGGKSLDSAESTREFEVFEHRGRSLRRRVE 321
            MV LGT+V+  GLL+LLHAGYSAAH++QF   +        D+ PLDAV+E +VGF +CV GV+ +A  +LP +G AGGG+S D+ E    F VF HR   LRRR +
Sbjct:    1 MVKLGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEAAPAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRRTQ 107
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BLAST of mRNA_E-fasciculatus_F_contig13.2273.1 vs. uniprot
Match: A0A7S2V2I7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.550e-14
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:   13 GTVVSAAGLLILLHAGYSAAHFQQFKKPSSSLGGGGGDSA-----PLDAVLEALVGFFVCVFGVLYSADALLPAKGTAGGGK-SLDSAESTREFEVFEHRGRSLRRRV 318
            GTV+   G+ ILLHAGYSAAHF+     S      G D +     P+D V+   +GF VC+ GVL SA  L P   + G G+ S D   S+ EF +F HRG++L +R+
Sbjct:    4 GTVIILIGMAILLHAGYSAAHFKSLVVSSVH----GADLSNVSIPPVDVVVGCAIGFSVCLLGVLTSAAPLKPIVASHGAGQGSFDEMASSPEFNIFNHRGKALSKRL 107
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BLAST of mRNA_E-fasciculatus_F_contig13.2273.1 vs. uniprot
Match: A0A3M6VHM6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHM6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-8
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSSLGGGGGDSAPLDAVLEALVGFFVCVFGVLYSADALLPAKGT-AGGGKSLDSAESTREFEVFEHRGRSLRRRV 318
            M  +G ++ A G L+L+HA Y +  ++ + K + +L        P + V+E +V F + + GVL ++  +LP +   A   +SL +  S+ +F VF HRG++L +RV
Sbjct:    1 MAIIGKLLIAMGTLLLVHASYYSVQYETYAKSTETLDA---PMPPFEVVVELVVSFLISLVGVLLTSGEMLPIRSNDALHSRSLATVISSPDFHVFNHRGKTLHKRV 104
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BLAST of mRNA_E-fasciculatus_F_contig13.2273.1 vs. uniprot
Match: A0A0L7QXM4_9HYME (Membrane magnesium transporter n=2 Tax=Apoidea TaxID=34735 RepID=A0A0L7QXM4_9HYME)

HSP 1 Score: 48.9 bits (115), Expect = 5.940e-5
Identity = 29/98 (29.59%), Postives = 52/98 (53.06%), Query Frame = 1 
Query:   22 VSAAGLLILLHAGYSAAHFQQFKKPSSSLGGGGGDSAPLDAVLEALVGFFVCVFGVLYSADALLPAKGTAG-GGKSLDSAESTREFEVFEHRGRSLRR 312
            ++  GLL +LHA YSAA  + + + +         + P+D +++ +   F+ ++GV+Y A      +       KS ++  +   F++F HRGRSLRR
Sbjct:   25 ITFIGLLSILHAAYSAAQHRSYLRITEQEF----TTLPIDILIQGIASLFMVMYGVMYIAGDFKEIRAVVDLENKSWETLRNLPSFQIFNHRGRSLRR 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13.2273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTM7_ECTSI2.950e-6494.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS2_9STRA4.800e-2751.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2I7_9STRA1.550e-1442.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3M6VHM6_9STRA2.100e-831.78Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0L7QXM4_9HYME5.940e-529.59Membrane magnesium transporter n=2 Tax=Apoidea Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13contigE-fasciculatus_F_contig13:16681..17013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue9.1e-08
Seed eggNOG ortholog115417.EPrPW00000016196
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0022857,GO:0022890,GO:0030176,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032991,GO:0034220,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072546,GO:0097708,GO:0098655,GO:0098796,GO:0098827
EggNOG free text desc.11 kDa salivary protein. Source PGD
EggNOG OGs1MHPA@121069,2S1Q8@2759,KOG3918@1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMagnesium transporter
Ec32 orthologEc-28_003510.1
Exons1
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927804.0941143-CDS-E-fasciculatus_F_contig13:16680..170131622927804.0941143-CDS-E-fasciculatus_F_contig13:16680..17013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13 16681..17013 -
1695995701.707125-CDS-E-fasciculatus_F_contig13:16680..170131695995701.707125-CDS-E-fasciculatus_F_contig13:16680..17013Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13 16681..17013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13.2273.1prot_E-fasciculatus_F_contig13.2273.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13 16681..17013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13.2273.1

>prot_E-fasciculatus_F_contig13.2273.1 ID=prot_E-fasciculatus_F_contig13.2273.1|Name=mRNA_E-fasciculatus_F_contig13.2273.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSSLGGGGGDSAPLDAVL
EALVGFFVCVFGVLYSADALLPAKGTAGGGKSLDSAESTREFEVFEHRGR
SLRRRVEGQR*
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mRNA from alignment at E-fasciculatus_F_contig13:16681..17013-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13.2273.1 ID=mRNA_E-fasciculatus_F_contig13.2273.1|Name=mRNA_E-fasciculatus_F_contig13.2273.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13:16681..17013- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCACCTGGGAACCGTGGTTTCGGCCGCCGGCCTGTTGATCCTTCT
CCACGCTGGGTATTCCGCCGCACACTTCCAGCAGTTCAAGAAACCGTCAT
CATCGTTGGGGGGCGGCGGCGGCGACTCGGCTCCGCTCGACGCGGTCCTC
GAAGCCCTGGTCGGCTTCTTCGTCTGCGTGTTTGGTGTCTTGTACAGCGC
CGACGCGCTCTTGCCCGCCAAGGGAACGGCGGGGGGCGGGAAGTCGCTGG
ACTCGGCCGAGTCGACGCGAGAGTTTGAGGTTTTCGAACACAGGGGTAGA
TCGCTGAGGAGACGGGTGGAGGGCCAACGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13:16681..17013-

>mRNA_E-fasciculatus_F_contig13.2273.1 ID=mRNA_E-fasciculatus_F_contig13.2273.1|Name=mRNA_E-fasciculatus_F_contig13.2273.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13:16681..17013- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCACCTGGGAACCGTGGTTTCGGCCGCCGGCCTGTTGATCCTTCT
CCACGCTGGGTATTCCGCCGCACACTTCCAGCAGTTCAAGAAACCGTCAT
CATCGTTGGGGGGCGGCGGCGGCGACTCGGCTCCGCTCGACGCGGTCCTC
GAAGCCCTGGTCGGCTTCTTCGTCTGCGTGTTTGGTGTCTTGTACAGCGC
CGACGCGCTCTTGCCCGCCAAGGGAACGGCGGGGGGCGGGAAGTCGCTGG
ACTCGGCCGAGTCGACGCGAGAGTTTGAGGTTTTCGAACACAGGGGTAGA
TCGCTGAGGAGACGGGTGGAGGGCCAACGGTGAATGGTTCACCTGGGAAC
CGTGGTTTCGGCCGCCGGCCTGTTGATCCTTCTCCACGCTGGGTATTCCG
CCGCACACTTCCAGCAGTTCAAGAAACCGTCATCATCGTTGGGGGGCGGC
GGCGGCGACTCGGCTCCGCTCGACGCGGTCCTCGAAGCCCTGGTCGGCTT
CTTCGTCTGCGTGTTTGGTGTCTTGTACAGCGCCGACGCGCTCTTGCCCG
CCAAGGGAACGGCGGGGGGCGGGAAGTCGCTGGACTCGGCCGAGTCGACG
CGAGAGTTTGAGGTTTTCGAACACAGGGGTAGATCGCTGAGGAGACGGGT
GGAGGGCCAACGGTGA
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