mRNA_E-fasciculatus_F_contig13.2271.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13.2271.1
Unique NamemRNA_E-fasciculatus_F_contig13.2271.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13.2271.1 vs. uniprot
Match: D8LTM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM5_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.100e-38
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:  416 IRGRHTRTTSFGAGIGGGGGEESNALLLRMDFEDADVEELRQWIRRYPFGTALPVQPFSLVETLAGVDVVFRK 634
            +RGRHTR TSFGAGIGGGGGEESNALLLRMDFEDAD EELRQWIRRYPFGTALPVQPFSLVET+ GVDVVFRK
Sbjct:    2 LRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRK 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13.2271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTM5_ECTSI3.100e-3893.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13contigE-fasciculatus_F_contig13:2..1896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_006340.2
Hectar predicted targeting categorysignal anchor
Exons2
Model size1190
Cds size675
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13.2271.1prot_E-fasciculatus_F_contig13.2271.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13 2..1381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.557403-CDS-E-fasciculatus_F_contig13:1..6391622927803.557403-CDS-E-fasciculatus_F_contig13:1..639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13 2..639 -
1695995701.4429636-CDS-E-fasciculatus_F_contig13:1..6391695995701.4429636-CDS-E-fasciculatus_F_contig13:1..639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13 2..639 -
1622927803.5731974-CDS-E-fasciculatus_F_contig13:1344..13811622927803.5731974-CDS-E-fasciculatus_F_contig13:1344..1381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13 1345..1381 -
1695995701.4566133-CDS-E-fasciculatus_F_contig13:1344..13811695995701.4566133-CDS-E-fasciculatus_F_contig13:1344..1381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13 1345..1381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.5836568-UTR-E-fasciculatus_F_contig13:1381..18961622927803.5836568-UTR-E-fasciculatus_F_contig13:1381..1896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13 1382..1896 -
1695995701.4687555-UTR-E-fasciculatus_F_contig13:1381..18961695995701.4687555-UTR-E-fasciculatus_F_contig13:1381..1896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13 1382..1896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13.2271.1

>prot_E-fasciculatus_F_contig13.2271.1 ID=prot_E-fasciculatus_F_contig13.2271.1|Name=mRNA_E-fasciculatus_F_contig13.2271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=225bp
MQTWKNCASGFEDTLLGRPFLCSPSLLWRRWLAWTLYSESEYSSVGGLGL
PAPSARREYARYCYCYCRACRHCRHNVYSCYLSGWCQGGFVIGVQGMSVN
RGSTAVPGEVNMKLGKYCCTYLASFWIGFWFSAAMPAGTNPVAVPLNSLS
LSPSWIRNATRRWLVVFRSVEALWDPCSSCRRTTLLKGGVLSWYSRAPRH
VFHVGTLYTRSPRWSSWYPRKPSKF
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mRNA from alignment at E-fasciculatus_F_contig13:2..1896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13.2271.1 ID=mRNA_E-fasciculatus_F_contig13.2271.1|Name=mRNA_E-fasciculatus_F_contig13.2271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1895bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13:2..1896- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCATGTTATATGCAATCGCCAAACCTGCTGCCTGCCCCGCCTCAGCTCGG
CCTGTACAAGCGCTGCTCTTCTTCCTAGTTTCATTGGTGCCAACAGCTGT
GGTGCAACATAGATGGGGCCACGAACAGCAGCAACTGTCGCGATCGTCGC
CATCTTCATATCTCTGGTACCGTTGAAAACCGTGGCCCTTGTCGCAGCGA
GCGCATCACCGGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGACAGGCGA
GCCACCTGTCAAACATGTTTTGGGCACGACGTCTGCTGGACACACCGAGA
AGCGTCATCAAGGCCGATTGCTGCAGTTGCTCCCTTGCAATACCACCGGT
CGTCCTCGTATCCGTCGTGGCTTGGTAGCGGTCGGCATAGGAAGCTTCAC
ATTATTACCAGGGAGATAAGAGGTCGGCATACGCGCACGACATCATTCGG
AGCGGGCATAGGTGGTGGAGGGGGTGAGGAGAGCAACGCGCTCCTCCTGA
GGATGGACTTCGAGGATGCAGACGTGGAAGAATTGCGCCAGTGGATTCGA
AGGTATTTTGTTGGCGCGTGTTGAATCTAAAGCGTGTGTGTGTACGTCCT
TGTTAACACCGCTCGCTGCCCCCTGAGTCGTACGGGCGATAATTGAACCG
CCAAAATATTGTGTTCGCGGATGGGTTGAACGCTCATGTCTCATGTCATC
CAGCTCATGACTCGAGAGTCGCTGTGCTTCTCTGTACAGTAAGTAAAGTA
CTCAGCTTTTATGTGTTGTGCGAAACGGGTGGCTTTGGCTACACAGACAG
GGGGTAGACTACATAGAGAGAGATTCTGTTCGTGGTGTGGTCGCGTGGCA
TAACGAGCAAAAGAAGGCCAGCAGACTTCGTTCGACAAACCGCCGAACCA
GACACAAGACGGAAACGACACAGGGGAACAGCGTCGAAAGAGCTATTGCC
TCCCTTCGTAATTTCACCGGCTAACCATCAAGAAGAACAAGAGAATTGAC
GAGATCATCTTCTGGTGTGTATGCCCTCATTGACGGTACCCACCACAGAG
GTGCTCACACGGATTGATGTCCTGCTATTCACTCCGCTTTCCCTTGAATA
TTTCTTGGCAATGAAAGGGTCTGCCTCGTCGGTAAAAAGTCTGACGACAT
AGTTGTATATTAGCAATCATGTAAGGACATCAATCTCTCTAAATGTTTCC
AAATTTCGGCGCTGTGCGCAAGCTGACGACCCCCCCACCCCATGTTGCGA
GCGGCAGATACCCTTTTGGGACGGCCCTTCCTGTGCAGCCCTTCTCTCTT
GTGGAGACGTTGGCTGGCGTGGACGTTGTATTCAGAAAGTGAGTACAGCA
GTGTTGGTGGGCTCGGTTTACCCGCCCCTAGTGCCAGGAGGGAATATGCT
CGCTATTGCTATTGCTATTGCAGGGCATGTCGCCATTGCCGGCATAACGT
CTACTCCTGTTATTTGTCGGGTTGGTGCCAGGGCGGTTTTGTGATCGGTG
TACAGGGCATGTCAGTAAACAGGGGCTCAACTGCTGTACCGGGAGAGGTG
AACATGAAGCTTGGGAAGTATTGTTGTACATACCTGGCAAGCTTCTGGAT
TGGGTTTTGGTTTTCAGCTGCAATGCCTGCTGGTACGAACCCTGTTGCAG
TGCCTCTAAACTCTCTCTCTCTCTCTCCCAGCTGGATACGGAACGCAACG
CGAAGGTGGCTTGTAGTTTTTCGATCCGTTGAAGCGTTGTGGGACCCCTG
CAGCAGTTGCCGCAGGACTACATTGCTTAAGGGGGGAGTGTTGTCTTGGT
ATTCCCGGGCACCAAGACATGTGTTTCACGTGGGTACATTGTATACCCGG
TCGCCCCGGTGGTCTAGTTGGTATCCACGTAAACCTTCTAAGTTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13:2..1896-

>mRNA_E-fasciculatus_F_contig13.2271.1 ID=mRNA_E-fasciculatus_F_contig13.2271.1|Name=mRNA_E-fasciculatus_F_contig13.2271.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13:2..1896- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGACGTGGAAGAATTGCGCCAGTGGATTCGAAGATGCAGACGTGGA
AGAATTGCGCCAGTGGATTCGAAGATACCCTTTTGGGACGGCCCTTCCTG
TGCAGCCCTTCTCTCTTGTGGAGACGTTGGCTGGCGTGGACGTTGTATTC
AGAAAGTGAGTACAGCAGTGTTGGTGGGCTCGGTTTACCCGCCCCTAGTG
CCAGGAGGGAATATGCTCGCTATTGCTATTGCTATTGCAGGGCATGTCGC
CATTGCCGGCATAACGTCTACTCCTGTTATTTGTCGGGTTGGTGCCAGGG
CGGTTTTGTGATCGGTGTACAGGGCATGTCAGTAAACAGGGGCTCAACTG
CTGTACCGGGAGAGGTGAACATGAAGCTTGGGAAGTATTGTTGTACATAC
CTGGCAAGCTTCTGGATTGGGTTTTGGTTTTCAGCTGCAATGCCTGCTGG
TACGAACCCTGTTGCAGTGCCTCTAAACTCTCTCTCTCTCTCTCCCAGCT
GGATACGGAACGCAACGCGAAGGTGGCTTGTAGTTTTTCGATCCGTTGAA
GCGTTGTGGGACCCCTGCAGCAGTTGCCGCAGGACTACATTGCTTAAGGG
GGGAGTGTTGTCTTGGTATTCCCGGGCACCAAGACATGTGTTTCACGTGG
GTACATTGTATACCCGGTCGCCCCGGTGGTCTAGTTGGTATCCACGTAAA
CCTTCTAAGTTTATACCCTTTTGGGACGGCCCTTCCTGTGCAGCCCTTCT
CTCTTGTGGAGACGTTGGCTGGCGTGGACGTTGTATTCAGAAAGTGAGTA
CAGCAGTGTTGGTGGGCTCGGTTTACCCGCCCCTAGTGCCAGGAGGGAAT
ATGCTCGCTATTGCTATTGCTATTGCAGGGCATGTCGCCATTGCCGGCAT
AACGTCTACTCCTGTTATTTGTCGGGTTGGTGCCAGGGCGGTTTTGTGAT
CGGTGTACAGGGCATGTCAGTAAACAGGGGCTCAACTGCTGTACCGGGAG
AGGTGAACATGAAGCTTGGGAAGTATTGTTGTACATACCTGGCAAGCTTC
TGGATTGGGTTTTGGTTTTCAGCTGCAATGCCTGCTGGTACGAACCCTGT
TGCAGTGCCTCTAAACTCTCTCTCTCTCTCTCCCAGCTGGATACGGAACG
CAACGCGAAGGTGGCTTGTAGTTTTTCGATCCGTTGAAGCGTTGTGGGAC
CCCTGCAGCAGTTGCCGCAGGACTACATTGCTTAAGGGGGGAGTGTTGTC
TTGGTATTCCCGGGCACCAAGACATGTGTTTCACGTGGGTACATTGTATA
CCCGGTCGCCCCGGTGGTCTAGTTGGTATCCACGTAAACCTTCTAAGTTT
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