mRNA_E-fasciculatus_F_contig12999.2270.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: D7FPZ3_ECTSI (Cryptochrome DASH n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPZ3_ECTSI) HSP 1 Score: 523 bits (1348), Expect = 1.180e-181 Identity = 265/290 (91.38%), Postives = 274/290 (94.48%), Query Frame = 1
Query: 160 MASMMSAGVASAGGSASALKDAAGIVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLGS 1029
MASMMSAG +AGGSA+ALK AAGIVWFKYSDLRLEDHEPLALAHRES+QVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALA RLGGG+ A VTLFAHTDVCSEEADVHAAVKSALAA SSAG G AVAVKE WGNTLHD+ADLPF FPSGVPE+FTQFRKSVESKYSCKM+PPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLG APERD+RSV PFNGGETAGL R+QSYIWDEDRLREYKVTRNGLLGS
Sbjct: 2 MASMMSAGGTAAGGSAAALKGAAGIVWFKYSDLRLEDHEPLALAHRESAQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAVKSALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESKYSCKMRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAPERDARSVFPFNGGETAGLRRVQSYIWDEDRLREYKVTRNGLLGS 291
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: D7FPZ4_ECTSI (Cryptochrome DASH n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ4_ECTSI) HSP 1 Score: 385 bits (988), Expect = 1.750e-127 Identity = 201/291 (69.07%), Postives = 235/291 (80.76%), Query Frame = 1
Query: 160 MASMMSAGVASAGGSASALKDAAGIVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVA--VAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLG 1026
MASM++ + + G S A D G+VWFK +DLRLEDHEPLALAHR SS VAHVFCIDDRWFG +RRGT +MSAARCRFLLESVADL+ RLR +GSDLL+RRGHPE+ IPA+A RLG GA+A VT++AH D+CSEE DVHAAVKSAL+ V SAG G A V+V EVWGNTLHD +DLP+ FP+G+PEVFT FRK+VE +CK++ PVPLPSPFRP+P G + + AIPTTEELGLG APERD+RSVL F GGETAGL R+Q+YIW+ED LREYKVTRNGLLG
Sbjct: 1 MASMVATSLTAGGASGIARGDTIGVVWFKCTDLRLEDHEPLALAHRNSSHVAHVFCIDDRWFGHSRRGTRRMSAARCRFLLESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASA-VTVYAHPDLCSEENDVHAAVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEP--NCKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFIGGETAGLRRVQTYIWEEDHLREYKVTRNGLLG 288
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: UPI0019E07FA7 (DASH family cryptochrome n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019E07FA7) HSP 1 Score: 200 bits (509), Expect = 1.330e-56 Identity = 124/264 (46.97%), Postives = 157/264 (59.47%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLL 1023
+VWF+ +DLRL DHEPL A + V V+C+D R FGQT G K A R +FLLES+A+LRA LR RGSDL++R+G PE+V+PAL L A + H +V +EE V AAV S L A+ VA WG TL + DLPFA +PEVFTQFRK VE+ + + P P P P+P G PG IPT +LGL P +D R+ + F GGETAGL+R++ Y+W DRLR YK TRNG+L
Sbjct: 4 LVWFR-NDLRLHDHEPLHDALQMGKSVIPVYCLDPRQFGQTTFGFPKTGAFRAQFLLESLANLRASLRSRGSDLILRQGKPEEVLPALTRELQADA-----IHWHEEVTAEETQVEAAVVSKLDALG---------VAANTYWGATLFHVDDLPFAIAK-LPEVFTQFRKKVEAHST--VYPTFPTPQQLPPLPAGLE--------PGDIPTLTDLGL-TPPPQDDRAQMHFPGGETAGLARLEHYVWQADRLRVYKDTRNGML 240
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: A9U403_PHYPA (Cryptochrome DASH n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9U403_PHYPA) HSP 1 Score: 201 bits (510), Expect = 3.870e-56 Identity = 117/267 (43.82%), Postives = 169/267 (63.30%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRR-GTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLGS 1029
IVWF+ +DLR+ D+E L A + S V ++ +D R +GQT G K R +F++ESVA+LR LR+RG DL+VR+G PEDV+P++A +G A T++AH + CSEE V VK LA + + + + VWG TL+ + DLPF+ PS +P+V+TQFRK VE Y+CK++P + +P+ P+P ++ GE G IPT ELGL E+ V+ F GGETA L+R+Q Y W++D+L+ YK TRNG+LG+
Sbjct: 67 IVWFR-NDLRISDNEALLKAWQSSQAVVPLYVVDPRLYGQTYHFGFPKTGELRAQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIG-----AHTVYAHKETCSEETTVETGVKRGLANLEGGPK---MQIRLDFVWGGTLYHLDDLPFS-PSELPDVYTQFRKGVE--YNCKVRPALKMPTQMGPLPESLSEKIGEL---GDIPTMAELGLKYR-EQSPLGVMHFEGGETAALARLQDYFWNKDQLKIYKETRNGMLGA 317
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: CRYD_GLOVI (Cryptochrome DASH n=2 Tax=Gloeobacter TaxID=33071 RepID=CRYD_GLOVI) HSP 1 Score: 197 bits (502), Expect = 1.830e-55 Identity = 120/266 (45.11%), Postives = 161/266 (60.53%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLGS 1029
+VW++ +DLR+ DHEPL A ++++V ++C D R FG+ G K R RFLLESVADLR LR+ GSDLLVRRGHPE+VIPAL + L A + H +V SEE V +++ALA ++ V V+ WG TL DLPFA + +PE+FT FRK VE S + PP+P P+ P+P A PG IP +LGL +P D R+VL F GGET+GL+R++ Y W + L+ YK TRNG+LG+
Sbjct: 7 LVWYR-NDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAA-----VHYHGEVTSEELVVERDLQAALAPLN---------VPVRSFWGTTLVHPDDLPFAIEA-IPELFTDFRKQVER--SAAINPPLPAPAKLPPLP---------AVDPGEIPQLADLGL-ESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYKQTRNGMLGA 244
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: UPI0019E3F893 (DASH family cryptochrome n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019E3F893) HSP 1 Score: 195 bits (495), Expect = 1.440e-54 Identity = 120/266 (45.11%), Postives = 165/266 (62.03%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLGS 1029
++W++ +DLR+ DHEPL A ++ + V V+C+D R FGQT G +K A R +FLLES+ADLR LRE GSDL+VR G PE +IP L + A + H +V +EE V A+K ALAA + + +K+ WG+TL+ DLPF S +PE+FT FRK VE + S + P +P P + +P G D GE IP+ +LGL P D R+VLPF GGE+AGL+R++ YIW++D LR YK TRNG+LG+
Sbjct: 6 LIWYR-TDLRIHDHEPLHQALKQQAIVVPVYCLDPRQFGQTSFGFAKTGAFRAQFLLESLADLRRSLRELGSDLIVRSGKPEQIIPNLVQQWQISA-----VHYHQEVTAEEQRVEQALKKALAAQT---------IPLKQFWGHTLYHPDDLPFDQRS-IPELFTAFRKQVEKQAS--VNPTLPGPRRLQALPEGI--DVGE------IPSVSDLGLEPVPP-DPRAVLPFQGGESAGLARLKHYIWEQDHLRRYKETRNGMLGA 244
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: A0A2T1DBF8_9CYAN (Cryptochrome DASH n=1 Tax=filamentous cyanobacterium CCP2 TaxID=2107700 RepID=A0A2T1DBF8_9CYAN) HSP 1 Score: 195 bits (495), Expect = 1.610e-54 Identity = 121/266 (45.49%), Postives = 158/266 (59.40%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLGS 1029
++W++ +DLR+ DHEPL A ++ QV V+C D R FGQT G SK A R +FLLESVADLR L+ GSDL++R G PEDVIP L + A + +V EE V AA++ L A+ V +K WG+TL+ DLPFA + +PE+FTQFRK VE + + P +P P R +P G G +PT +ELGL AP+ D R+VLPF GGETAGL R+ Y W DRLR YK TRNG++G+
Sbjct: 7 LIWYR-NDLRIHDHEPLNHALKQRGQVIPVYCFDPRQFGQTSFGFSKTGAFRTQFLLESVADLRRSLQSLGSDLVIRTGKPEDVIPELVKQWEISA-----VHYSQEVTVEELTVEAALQKNLEAIG---------VPMKGFWGHTLYHPDDLPFAV-NRLPEIFTQFRKQVEK--TSTVNPVLPSPRMLRGLPEGIET--------GHLPTLQELGL-EAPQHDDRAVLPFKGGETAGLDRLDHYFWKGDRLRIYKETRNGMVGA 245
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: K9ULC6_CHAP6 (Cryptochrome DASH n=2 Tax=Chamaesiphon TaxID=217161 RepID=K9ULC6_CHAP6) HSP 1 Score: 194 bits (494), Expect = 2.890e-54 Identity = 115/266 (43.23%), Postives = 156/266 (58.65%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLGS 1029
++W++ +DLRL DH+PL A ++ + + +C DDR FGQT G K R +FLLESVAD + R GS+L++RRG E++IP L LG ++ H +V EE V A+++AL AV+ V + WG+TLH + DLPF P+ VPE+FT FRK VE K P LP+P P D PG +PT E+L + AP+ DSR VL + GGETAG+ R+ YIW+ DRLR YK TRNG+LG+
Sbjct: 7 LIWYR-NDLRLHDHQPLTQALKDGASIIPFYCFDDRQFGQTSFGFPKTGGFRAQFLLESVADFQHSYRSLGSELIIRRGLTEEIIPQLVEPLG-----ITDVYYHQEVTPEEIAVSTALEAALKAVN---------VNCRSFWGHTLHLLQDLPFTLPN-VPELFTNFRKEVERKAPT----PTCLPAPTSLPPLSVNID------PGTLPTIEDLRV-TAPQPDSRRVLAYRGGETAGIDRLNEYIWERDRLRVYKETRNGMLGA 245
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: UPI0019E7A52F (DASH family cryptochrome n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019E7A52F) HSP 1 Score: 194 bits (493), Expect = 3.020e-54 Identity = 121/266 (45.49%), Postives = 158/266 (59.40%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGAAPERDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLGS 1029
++WF+ +DLRL DHEPL A ++S + ++C D R FG+T G K A R +FL ESV DLR LR+RGSDL++R+G PE VI L G A +F HT+ +EE V A+ LA + + ++ WG+TLH DLPF S +PEVFT+FRK VE + + P + LP P +P PGA+PT E+LGL APE D RSVL F GGETAG +R+Q YIW DRLR YK TRNG++G+
Sbjct: 5 LIWFR-NDLRLHDHEPLCRAIAQTSNILPLYCFDPRQFGETAFGFPKTGAFRAQFLRESVVDLRDNLRQRGSDLIIRQGKPEAVIFELVQIYGVEA-----VFYHTEPMAEEQAVERAIARNLAPLGTK---------LRGFWGHTLHHPDDLPFEI-SALPEVFTKFRKKVERDPA--INPTLSLPKPPAALPPDLE--------PGALPTLEDLGL-EAPEVDERSVLRFTGGETAGKARLQDYIWQGDRLRVYKETRNGMVGA 243
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Match: A0A5A8C6H0_CAFRO (Cryptochrome DASH n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C6H0_CAFRO) HSP 1 Score: 197 bits (501), Expect = 3.770e-54 Identity = 134/358 (37.43%), Postives = 165/358 (46.09%), Query Frame = 1
Query: 232 IVWFKYSDLRLEDHEPLALAHRESSQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALATRLGGGAAAAVTLFAHTDVCSEEADVHAAVKSALAAVSSAGXXXGVAVAVKEVWGNTLHDIADLPFAFPSGVPEVFTQFRKSVESKYSCKMQPPVPLPSPFRPVPTGT---TQDDGEASAP------------------------------GAIPTTEELGL-------------------------------------GAAPE-----------------------RDSRSVLPFNGGETAGLSRIQSYIWDEDRLREYKVTRNGLLG 1026
+VWFK +DLRL DH PL+ AH S V HV CID RWFG + G +K R RFL ESVADL L RGS L+VR PE +PA+A G A ++AH++VCSEE AV++AL + S V + + WGNTLHD+ADLPF S P+VF+QFR+ VE+K CK +PP+P P RP P G T G A P G +P ELG GA P RD R + GGETA L+R++ Y+WDEDRLREYK TRNG+ G
Sbjct: 43 VVWFKATDLRLHDHGPLSKAHAAHSHVVHVMCIDPRWFGASPTGFAKTGFHRARFLSESVADLARSLAARGSSLVVRASRPEVALPAVAAACGASA-----VYAHSEVCSEELAADRAVRAALHGLPSP-------VRLSQCWGNTLHDVADLPFDASSDTPQVFSQFRRLVEAK--CKPRPPLPPPPALRPAPPGFAAGTSPHGLAMLPLDGGGPGSQPPHSHAAVRPLPASAVDAVLAGRVPMAWELGCALPPGMDTSALRPVAPPAGVGLPPGVALASGPGATSGGAVPPDAPXXXXXXXPALSARQVECGGLRDPRCAIQLFGGETAALARLRLYLWDEDRLREYKQTRNGMAG 386 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12999.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12999.2270.1 >prot_E-fasciculatus_F_contig12999.2270.1 ID=prot_E-fasciculatus_F_contig12999.2270.1|Name=mRNA_E-fasciculatus_F_contig12999.2270.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=343bp MLLHFRRPTAAATLACLLPASQSFFAGTTLLGYPRYHHNQRCCTSWRTLHback to top mRNA from alignment at E-fasciculatus_F_contig12999:1365..3795+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12999.2270.1 ID=mRNA_E-fasciculatus_F_contig12999.2270.1|Name=mRNA_E-fasciculatus_F_contig12999.2270.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2431bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12999:1365..3795+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12999:1365..3795+ >mRNA_E-fasciculatus_F_contig12999.2270.1 ID=mRNA_E-fasciculatus_F_contig12999.2270.1|Name=mRNA_E-fasciculatus_F_contig12999.2270.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2058bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12999:1365..3795+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |