mRNA_E-fasciculatus_F_contig12999.2269.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12999.2269.1
Unique NamemRNA_E-fasciculatus_F_contig12999.2269.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: D7FPZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ2_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.760e-49
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQG+VVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV
Sbjct:   67 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 147          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A6H5JWS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS9_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.580e-48
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQG+VVLRGTGYRRERKGSPLQNIFRQFCDAKA+PCTSV
Sbjct:   67 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSV 147          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A4D9CX39_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX39_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.220e-36
Identity = 65/81 (80.25%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            RPSLDDVERLS GQAAKKRGTGSR +CHRLNE ERK +DLAKK GFV LRGTGYRRERKGSPL NI RQ CDA   PC  V
Sbjct:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEV 167          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: W7TT87_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT87_9STRA)

HSP 1 Score: 133 bits (335), Expect = 6.040e-36
Identity = 65/81 (80.25%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            RPSLDDVERLS GQAAKKRGTGSR +CHRLNE ERK +DLAKK GFV LRGTGYRRERKGSPL NI RQ CDA   PC  V
Sbjct:   87 RPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEV 167          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A836CH55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH55_9STRA)

HSP 1 Score: 130 bits (328), Expect = 7.800e-36
Identity = 62/81 (76.54%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            RPSLDDVER+S G+AAKKRGTGSRGVCHRLN  ER  ++LAKK+G++VLRGTGYR+ERKGSPL NIFRQ+CDAKA+P  S+
Sbjct:   69 RPSLDDVERISFGKAAKKRGTGSRGVCHRLNADERAEWELAKKRGYLVLRGTGYRKERKGSPLGNIFRQYCDAKAVPFVSL 149          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A7S1BHJ3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BHJ3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.440e-30
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            RP+LDDVERLS G   +KRGTGS+ VCHRLN+ ERK YDLAKK G++ +RGTGYR++RKGSPL N FRQ CDA   PC  V
Sbjct:    7 RPNLDDVERLSYGNGTRKRGTGSKYVCHRLNQEERKLYDLAKKAGYLSIRGTGYRKQRKGSPLCNTFRQRCDALEKPCLIV 87          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A7S2E7L9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7L9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.790e-28
Identity = 57/82 (69.51%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKK-RGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            RP LDDVERLS GQ AKK RGTGSR VCHRLN  ERK YDLAK+ G++ +RGTGYR+ERKGSP+ N FRQ CDA    C  V
Sbjct:    7 RPFLDDVERLSYGQGAKKQRGTGSRFVCHRLNRDERKLYDLAKQAGYLTVRGTGYRKERKGSPVCNTFRQRCDALEEICVIV 88          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A2P6TIU8_CHLSO (Phosphate transporter n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIU8_CHLSO)

HSP 1 Score: 115 bits (289), Expect = 2.630e-28
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMP 231
            RPSLDDV+R+S G AAK RGTGSR V HRLN  ERKAYDLAK++GF+ + G+GYRRERKGSPL NI+RQ+CDA+  P
Sbjct:  563 RPSLDDVQRISTGDAAKHRGTGSRAVPHRLNAEERKAYDLAKQKGFLTIAGSGYRRERKGSPLANIWRQWCDAQGRP 639          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A0G4EX23_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX23_VITBC)

HSP 1 Score: 111 bits (277), Expect = 2.920e-28
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKK--RGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSV 243
            R +LDDVER+SRGQAA+K  RGTGSR V HRLN+ ERK YD+AK + ++V  G+ YRRERKGSPL NI+RQ+CDA+A PC ++
Sbjct:   73 RAALDDVERISRGQAARKKRRGTGSRNVPHRLNQEERKLYDIAKGRRYLVTSGSAYRRERKGSPLANIYRQWCDAQATPCINI 155          
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Match: A0A250XIL1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XIL1_9CHLO)

HSP 1 Score: 113 bits (282), Expect = 9.720e-28
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPC 234
            RP +DDV+RLSRG+ AK RGTG R + HRLNE E   +  AKK+GF  +RGTGYR+ERKG+PL NIFRQ+CDAK MPC
Sbjct:   27 RPHVDDVDRLSRGEGAKIRGTGCRDIPHRLNEQEHAGFKAAKKKGFAAVRGTGYRKERKGNPLPNIFRQWCDAKEMPC 104          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12999.2269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPZ2_ECTSI1.760e-4998.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWS9_9PHAE3.580e-4897.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CX39_9STRA1.220e-3680.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TT87_9STRA6.040e-3680.25Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A836CH55_9STRA7.800e-3676.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BHJ3_9STRA1.440e-3067.90Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2E7L9_9STRA1.790e-2869.51Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A2P6TIU8_CHLSO2.630e-2871.43Phosphate transporter n=1 Tax=Chlorella sorokinian... [more]
A0A0G4EX23_VITBC2.920e-2865.06Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A250XIL1_9CHLO9.720e-2866.67Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12999contigE-fasciculatus_F_contig12999:383..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue2.8e-38
Seed eggNOG ortholog2880.D7FPZ2
EggNOG OGs2C7ID@1,2S2CN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.408632-CDS-E-fasciculatus_F_contig12999:382..5171622927803.408632-CDS-E-fasciculatus_F_contig12999:382..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12999 383..517 -
1695995701.389903-CDS-E-fasciculatus_F_contig12999:382..5171695995701.389903-CDS-E-fasciculatus_F_contig12999:382..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12999 383..517 -
1622927803.4189374-CDS-E-fasciculatus_F_contig12999:830..9381622927803.4189374-CDS-E-fasciculatus_F_contig12999:830..938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12999 831..938 -
1695995701.3996587-CDS-E-fasciculatus_F_contig12999:830..9381695995701.3996587-CDS-E-fasciculatus_F_contig12999:830..938Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12999 831..938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12999.2269.1prot_E-fasciculatus_F_contig12999.2269.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12999 383..938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12999.2269.1

>prot_E-fasciculatus_F_contig12999.2269.1 ID=prot_E-fasciculatus_F_contig12999.2269.1|Name=mRNA_E-fasciculatus_F_contig12999.2269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGFVVLR
GTGYRRERKGSPLQNIFRQFCDAKAMPCTSV
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mRNA from alignment at E-fasciculatus_F_contig12999:383..938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12999.2269.1 ID=mRNA_E-fasciculatus_F_contig12999.2269.1|Name=mRNA_E-fasciculatus_F_contig12999.2269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=556bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12999:383..938- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACCCTCGCTAGATGATGTAGAGCGTCTGTCGAGAGGCCAGGCTGCCAA AAAACGGGGAACAGGGAGCCGAGGTGTCTGCCACCGCCTGAATGAGTCAG AACGAAAGGTATGTAGTATTGTCCGGTATTTGTAGGTAGATACACTGCTG CATGCATCGCTCTCGTTTGGTCAAATTTACATTAGTTGAAATGTGTCGAT CGGAGCACGTTGAGAATCTTGTGCGTAGGTGAGCTACATGCATCTCCTGG TGCTGTTCGAAATTGCTAAGTCGGGTCAATGTGGCTGTAGGATTGCCACC AGGAATCAAGAATGAATGTCCACGCTGAGTACCCCGTACCCCGTACCCCG TACAGCACTGCTGCTGCACATGACAAACCGCGCCTGTGTGCTGCGTCTTC AATCTACCCCCTTTTAAATAGGCGTATGATCTGGCCAAGAAACAAGGCTT CGTCGTTCTAAGGGGCACGGGCTATCGGAGGGAGCGCAAGGGTAGCCCTC TTCAAAATATCTTCAGGCAGTTTTGCGACGCGAAAGCCATGCCTTGCACC AGCGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12999:383..938-

>mRNA_E-fasciculatus_F_contig12999.2269.1 ID=mRNA_E-fasciculatus_F_contig12999.2269.1|Name=mRNA_E-fasciculatus_F_contig12999.2269.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12999:383..938- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACCCTCGCTAGATGATGTAGAGCGTCTGTCGAGAGGCCAGGCTGCCAA
AAAACGGGGAACAGGGAGCCGAGGTGTCTGCCACCGCCTGAATGAGTCAG
AACGAAAGAGACCCTCGCTAGATGATGTAGAGCGTCTGTCGAGAGGCCAG
GCTGCCAAAAAACGGGGAACAGGGAGCCGAGGTGTCTGCCACCGCCTGAA
TGAGTCAGAACGAAAGGCGTATGATCTGGCCAAGAAACAAGGCTTCGTCG
TTCTAAGGGGCACGGGCTATCGGAGGGAGCGCAAGGGTAGCCCTCTTCAA
AATATCTTCAGGCAGTTTTGCGACGCGAAAGCCATGCCTTGCACCAGCGT
TGCGTATGATCTGGCCAAGAAACAAGGCTTCGTCGTTCTAAGGGGCACGG
GCTATCGGAGGGAGCGCAAGGGTAGCCCTCTTCAAAATATCTTCAGGCAG
TTTTGCGACGCGAAAGCCATGCCTTGCACCAGCGTT
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