mRNA_E-fasciculatus_F_contig12994.2268.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: D8LTR7_ECTSI (3-ketoacyl-CoA synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR7_ECTSI) HSP 1 Score: 380 bits (975), Expect = 1.290e-128 Identity = 185/190 (97.37%), Postives = 188/190 (98.95%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLNPPDRK 570
R QGAG+DAFEAVYESED LG+HGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKA+REMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLNPPDRK
Sbjct: 318 RTQGAGKDAFEAVYESEDNLGNHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKALREMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLNPPDRK 507
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7S2XYV1_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYV1_9STRA) HSP 1 Score: 280 bits (717), Expect = 2.010e-89 Identity = 136/189 (71.96%), Postives = 155/189 (82.01%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLNPPDR 567
R QG G DA+EAVYE EDK GHHGV+LSK+IV VAGR MEKNFT+LGP VLP+SEQ KVV A+ LRK T+ I K +L+K V + Y PDFKRGIDHFCIHAGGR VIDG+EKNL LQ +HTEPSRATLRDYGNTSSSSIWYEMKY+EEH L+RGQR+LQ+AFGSGFKCNSAVW+ L+PP +
Sbjct: 340 RTQGIGEDAYEAVYECEDKDGHHGVKLSKDIVMVAGRTMEKNFTTLGPLVLPLSEQAKVVWAIVLRKATQWI-------KRNLSKGVNVTKNYVPDFKRGIDHFCIHAGGRAVIDGVEKNLKLQPYHTEPSRATLRDYGNTSSSSIWYEMKYVEEHQVLKRGQRLLQIAFGSGFKCNSAVWLSLHPPRQ 521
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A835YTW0_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW0_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.060e-79 Identity = 123/185 (66.49%), Postives = 145/185 (78.38%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLN 555
R QG G DA+E V+E ED LGH GVRLSK+IV+VAG+AM+ NFT+LGP+VLP+SEQ +K+ A + + + + +LEKR +LA KVP Y PDFKRGIDHFCIHAGGRGVIDGIEK L L + T PSR L YGNTSSSSIWYEM +I + DL+RGQRILQVAFGSGFKCNSAVW+CLN
Sbjct: 330 RTQGEGLDAYECVFECEDDLGHRGVRLSKQIVEVAGKAMQDNFTALGPHVLPLSEQIPTIKSYAAKYLCRRLTRVLEKRNPALAAKVPRPRTYIPDFKRGIDHFCIHAGGRGVIDGIEKTLKLSQKQTLPSREALSRYGNTSSSSIWYEMDFILHNQDLKRGQRILQVAFGSGFKCNSAVWLCLN 514
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7S2A0B6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A0B6_TRICV) HSP 1 Score: 246 bits (628), Expect = 1.100e-79 Identity = 118/187 (63.10%), Postives = 151/187 (80.75%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEH---SDLRRGQRILQVAFGSGFKCNSAVWICL 552
RVQGAG DA++ V+E++DK G GVRLSKEIVKVAG+ MEKN T +GPYVLP++EQ+KVV +L R V K++R+ L ++ +S K+P++ +Y PDFKRGIDHFCIHAGGR VIDGIEKN+ L+ HTEPSR TL +YGNTSSSSIWYE++YI+E + L++G R++QVAFGSGFKC S VW+ L
Sbjct: 61 RVQGAGEDAYQCVFEAQDKDGKRGVRLSKEIVKVAGKCMEKNMTMIGPYVLPLTEQFKVVLSLLARFVIKSLRKSLGEKTAS---KLPVVKHYVPDFKRGIDHFCIHAGGRAVIDGIEKNMKLELFHTEPSRMTLLNYGNTSSSSIWYELEYIQEQQTTNPLKKGHRVMQVAFGSGFKCTSGVWLKL 244
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7S4DBI7_HETAK (3-ketoacyl-CoA synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBI7_HETAK) HSP 1 Score: 254 bits (649), Expect = 4.540e-79 Identity = 124/185 (67.03%), Postives = 144/185 (77.84%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLN 555
R QG G DA+ AV+E EDK GHHGVRLSKEIV VAGR ME+NFT+LGP VLP+SEQ KVV +L R VTK ++ + V + Y PDFKRGIDHFCIHAGGR VI+GIEKN+ L ++HTE S+ATLRDYGNTSSSSIWYE+KYIEE +L+RGQR+LQVAFGSGFKCNS VW+ L
Sbjct: 370 RTQGMGEDAYNAVFECEDKEGHHGVRLSKEIVMVAGRTMERNFTTLGPLVLPLSEQAKVVLSLVARFVTKKLK--------AAGLGVGVARTYVPDFKRGIDHFCIHAGGRAVIEGIEKNMKLHDYHTEASKATLRDYGNTSSSSIWYELKYIEERMNLKRGQRVLQVAFGSGFKCNSCVWLSLK 546
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7S0AVD4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AVD4_9STRA) HSP 1 Score: 243 bits (620), Expect = 4.580e-78 Identity = 121/189 (64.02%), Postives = 146/189 (77.25%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLE--KRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEH---SDLRRGQRILQVAFGSGFKCNSAVWICL 552
RVQG DA+ VYE+EDK G GVRLSKEIVKVAG+ MEKN T +GPYVLP+SEQ+KVV +L R TK++++ML +A+K+P I Y PDFKRGIDHFCIHAGGR VIDGIEKN+ L+ HTEPSR L +YGNTSSSSIWYE++YI+EH + L++G RI+QVAFGSGFKC S VW+ L
Sbjct: 85 RVQGTTEDAYNCVYETEDKDGERGVRLSKEIVKVAGKCMEKNMTMIGPYVLPLSEQFKVVISLIGRFATKSLKKMLGGGAANEKMAEKIPNIRPYVPDFKRGIDHFCIHAGGRAVIDGIEKNMKLELFHTEPSRMALLNYGNTSSSSIWYELEYIQEHQKTNPLKKGHRIMQVAFGSGFKCTSGVWLKL 273
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7R9WIM4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WIM4_9STRA) HSP 1 Score: 239 bits (609), Expect = 1.160e-76 Identity = 121/189 (64.02%), Postives = 146/189 (77.25%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRKSS--LAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEH---SDLRRGQRILQVAFGSGFKCNSAVWICL 552
RVQG+ A AVYE+ED GH GVRLSK+IVKVAG+ MEKN T +GPYVLP+SEQ VV +LA R V K +R L+ K + LA K+P++ +Y PDFKRGIDHFCIHAGGR VIDGIEKN+ L+ HTEPSR TL +YGNTSSSSIWYE++YI+E + LR+G R++QVAFGSGFKC S VW+ L
Sbjct: 66 RVQGSTDAALGAVYETEDVNGHRGVRLSKDIVKVAGKCMEKNMTMIGPYVLPLSEQIPVVWSLAGRFVVKGLRGALKGSKKTGWLADKLPVVKHYVPDFKRGIDHFCIHAGGRAVIDGIEKNMKLELFHTEPSRMTLLNYGNTSSSSIWYELEYIQETQRTNPLRKGHRVMQVAFGSGFKCTSGVWLKL 254
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7S2CUL9_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUL9_9STRA) HSP 1 Score: 238 bits (608), Expect = 2.890e-73 Identity = 114/190 (60.00%), Postives = 143/190 (75.26%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKR-KSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLNPPDR 567
R QG +++E V+E ED+ G+ GVRLSK+IVKVAGRAME+NFT+LGPYVLP+SE +KV KA R V+K +R EK +S+ +P++ Y PDFKRGIDHFCIHAGGR V+DG+ +NL L + EPSR TL YGNTSSSSIWYE+ +I + + RRG R+LQ+AFGSGFKCNSAVW+CL D
Sbjct: 317 RKQGIDDESYECVFECEDENGNRGVRLSKQIVKVAGRAMEQNFTALGPYVLPVSEIWKVAKATVARPVSKLLRAFFEKNGMTSVVAMIPLVKPYIPDFKRGIDHFCIHAGGRAVVDGVGQNLKLDDAQLEPSRHTLYHYGNTSSSSIWYELDHIRKSMNQRRGHRVLQLAFGSGFKCNSAVWLCLQDGDN 506
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7S2WTL4_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTL4_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.170e-72 Identity = 111/186 (59.68%), Postives = 144/186 (77.42%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRK-SSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEHSDLRRGQRILQVAFGSGFKCNSAVWICLN 555
R+QG +++E+V+E ED G+HGVRLSK++ VAGRAME+N T+LGP+VLP+SE KV + LR +T+ +R LEK + + LAK VP++A Y PDFKRGIDHFCIHAGGR V+D + NL L E T+PSR TL +YGNTSSSSIWYE+ +I H +RGQR+LQ++FGSGFKCN+AVW+CL
Sbjct: 326 RLQGTDDESYESVFECEDSEGNHGVRLSKKVPDVAGRAMEQNLTALGPHVLPLSEMIKVGRVWGLRFLTRRLRVWLEKNQMTKLAKYVPVVAPYVPDFKRGIDHFCIHAGGRKVVDDVAANLKLSEDQTQPSRDTLYNYGNTSSSSIWYELSFIRHHMKQKRGQRVLQISFGSGFKCNTAVWLCLK 511
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Match: A0A7S2I4J3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4J3_9STRA) HSP 1 Score: 237 bits (604), Expect = 2.310e-72 Identity = 116/187 (62.03%), Postives = 147/187 (78.61%), Query Frame = 1
Query: 1 RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVLPISEQYKVVKALALRKVTKAIREMLEKRKSSLAKKVPIIAYYQPDFKRGIDHFCIHAGGRGVIDGIEKNLALQEHHTEPSRATLRDYGNTSSSSIWYEMKYIEEH---SDLRRGQRILQVAFGSGFKCNSAVWICL 552
RVQG G DA++ VYE++D+ G+ GVRLSK+IVKVAG+ MEKN T+LGPYVLP+SEQ KVV +LA R K +R L ++ +A K+P + PDFKRGIDHFCIHAGGR VIDGIEKN+ L++ HTEPSR TL ++GNTSSSSIWYE++YI+E + L++G R++QVAFGSGFKC S VW+ L
Sbjct: 365 RVQGTGEDAYQCVYETQDEDGYRGVRLSKDIVKVAGKCMEKNMTTLGPYVLPLSEQIKVVFSLASRFFFKTLRRTLSEK---VAVKLPHPKVFVPDFKRGIDHFCIHAGGRAVIDGIEKNMKLEQFHTEPSRMTLLNHGNTSSSSIWYELEYIQEQQKTNPLKKGHRVMQVAFGSGFKCTSGVWLKL 548 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12994.2268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12994.2268.1 >prot_E-fasciculatus_F_contig12994.2268.1 ID=prot_E-fasciculatus_F_contig12994.2268.1|Name=mRNA_E-fasciculatus_F_contig12994.2268.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=191bp RVQGAGRDAFEAVYESEDKLGHHGVRLSKEIVKVAGRAMEKNFTSLGPYVback to top mRNA from alignment at E-fasciculatus_F_contig12994:47..3422+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12994.2268.1 ID=mRNA_E-fasciculatus_F_contig12994.2268.1|Name=mRNA_E-fasciculatus_F_contig12994.2268.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3376bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12994:47..3422+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12994:47..3422+ >mRNA_E-fasciculatus_F_contig12994.2268.1 ID=mRNA_E-fasciculatus_F_contig12994.2268.1|Name=mRNA_E-fasciculatus_F_contig12994.2268.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1146bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12994:47..3422+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |