mRNA_E-fasciculatus_F_contig12990.2267.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12990.2267.1
Unique NamemRNA_E-fasciculatus_F_contig12990.2267.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: D8LKN6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.830e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 MAVNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSF 120
            MAVNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSF
Sbjct:    1 MAVNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSF 40
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A7S2C7N1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C7N1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.520e-12
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   13 TAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            TAPVKWAQRADS+Y+T+ LPDVKDE+++LTKD LSF+
Sbjct:    9 TAPVKWAQRADSLYVTIALPDVKDEKIELTKDKLSFK 45
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A6T7E0F6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7E0F6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.320e-11
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   13 TAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            TAPVKWAQRADS+Y+T+ LPDVKDE+++LTKD LSF+
Sbjct:    9 TAPVKWAQRADSLYVTIALPDVKDEKIELTKDKLSFK 45
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A2D4BNF5_PYTIN (CS domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNF5_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 4.580e-11
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   16 APVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            APVKWAQR DSIY+T+DLPDVKDEQ+KLT   LSFR
Sbjct:   10 APVKWAQRKDSIYVTVDLPDVKDEQVKLTNKSLSFR 45
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A7S2YD22_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YD22_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.930e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 MAVNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            MA+NTAP+KWAQR+DS+YLT+ LPDVKDE ++LT   L F+
Sbjct:    1 MAINTAPIKWAQRSDSLYLTIALPDVKDETIQLTDSELHFK 41
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A8K1CRT1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRT1_PYTOL)

HSP 1 Score: 61.2 bits (147), Expect = 2.440e-10
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   16 APVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            APVKWAQR DSIY+T+DLPDVKDE++KLT   LSFR
Sbjct:    9 APVKWAQRKDSIYVTVDLPDVKDEEVKLTDKNLSFR 44
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A7S2WMS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMS4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.250e-10
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 MAVNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            MA NTAP+KWAQR DS+Y+T+ LPDVKDE + LT   L F+
Sbjct:    1 MASNTAPIKWAQRTDSLYITIALPDVKDETINLTDTELHFK 41
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A7S2ET46_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ET46_TRICV)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-9
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 MAVNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            M+VNTAP+KWAQR+DS+Y+T+ +PD+KDE + L+ D L F+
Sbjct:   32 MSVNTAPIKWAQRSDSLYVTIAVPDIKDETIDLSNDKLVFK 72
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A7S1BD53_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BD53_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.500e-9
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    7 VNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            VNTAP+KWAQR+DS+Y+T+ LPDV +E +KL+ D L FR
Sbjct:   61 VNTAPIKWAQRSDSLYVTISLPDVSEENIKLSDDGLHFR 99
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BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Match: A0A7S0C9D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.800e-9
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    7 VNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFR 123
            +NTAP+KWAQR+DS+YLT+ LPDVK+E + L+ D L F+
Sbjct:    6 INTAPMKWAQRSDSLYLTIALPDVKEETINLSDDELHFK 44
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12990.2267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN6_ECTSI2.830e-18100.00CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A7S2C7N1_9STRA5.520e-1275.68Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6T7E0F6_9STRA4.320e-1175.68Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2D4BNF5_PYTIN4.580e-1180.56CS domain-containing protein n=1 Tax=Pythium insid... [more]
A0A7S2YD22_9STRA6.930e-1165.85Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A8K1CRT1_PYTOL2.440e-1077.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2WMS4_9STRA9.250e-1063.41Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2ET46_TRICV1.060e-958.54Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1BD53_9STRA1.500e-964.10Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S0C9D9_9STRA2.800e-961.54Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12990contigE-fasciculatus_F_contig12990:119..265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.9e-14
Seed eggNOG ortholog2880.D8LKN6
Preferred nameSBA1
KEGG rclassRC00672
KEGG koko:K10858,ko:K13127,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,ko03430,ko03460,map00590,map01100,map03430,map03460
KEGG ModuleM00295
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006457,GO:0007275,GO:0008150,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010449,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010648,GO:0010817,GO:0016020,GO:0019219,GO:0019222,GO:0022622,GO:0023051,GO:0023057,GO:0030054,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0033043,GO:0033044,GO:0035266,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0048364,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051052,GO:0051054,GO:0051087,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051338,GO:0051972,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071944,GO:0080036,GO:0080037,GO:0080090,GO:0099402,GO:1904356,GO:1904358,GO:2000012,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.prostaglandin-E synthase activity
EggNOG OGsKOG3158@1,KOG3158@2759
EC5.3.99.3
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.2911592-CDS-E-fasciculatus_F_contig12990:118..2651622927803.2911592-CDS-E-fasciculatus_F_contig12990:118..265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12990 119..265 +
1695995701.3131745-CDS-E-fasciculatus_F_contig12990:118..2651695995701.3131745-CDS-E-fasciculatus_F_contig12990:118..265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12990 119..265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12990.2267.1prot_E-fasciculatus_F_contig12990.2267.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12990 119..265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12990.2267.1

>prot_E-fasciculatus_F_contig12990.2267.1 ID=prot_E-fasciculatus_F_contig12990.2267.1|Name=mRNA_E-fasciculatus_F_contig12990.2267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=49bp
MAVNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFRQARKASK*
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mRNA from alignment at E-fasciculatus_F_contig12990:119..265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12990.2267.1 ID=mRNA_E-fasciculatus_F_contig12990.2267.1|Name=mRNA_E-fasciculatus_F_contig12990.2267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12990:119..265+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGTCAACACAGCACCCGTCAAGTGGGCTCAGCGAGCCGACAGCAT
CTACCTGACGCTTGATCTTCCGGACGTGAAGGACGAGCAGCTCAAGCTCA
CCAAGGACATGCTCTCTTTCAGGCAAGCACGCAAAGCGAGCAAGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12990:119..265+

>mRNA_E-fasciculatus_F_contig12990.2267.1 ID=mRNA_E-fasciculatus_F_contig12990.2267.1|Name=mRNA_E-fasciculatus_F_contig12990.2267.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12990:119..265+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGTCAACACAGCACCCGTCAAGTGGGCTCAGCGAGCCGACAGCAT
CTACCTGACGCTTGATCTTCCGGACGTGAAGGACGAGCAGCTCAAGCTCA
CCAAGGACATGCTCTCTTTCAGGCAAGCACGCAAAGCGAGCAAGTAAATG
GCAGTCAACACAGCACCCGTCAAGTGGGCTCAGCGAGCCGACAGCATCTA
CCTGACGCTTGATCTTCCGGACGTGAAGGACGAGCAGCTCAAGCTCACCA
AGGACATGCTCTCTTTCAGGCAAGCACGCAAAGCGAGCAAGTAA
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