mRNA_E-fasciculatus_F_contig1299.2266.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1299.2266.1
Unique NamemRNA_E-fasciculatus_F_contig1299.2266.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1299.2266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1299contigE-fasciculatus_F_contig1299:11653..15773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons4
Model size390
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1299.2266.1prot_E-fasciculatus_F_contig1299.2266.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1299 11653..15773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.2158546-CDS-E-fasciculatus_F_contig1299:11652..117171622927803.2158546-CDS-E-fasciculatus_F_contig1299:11652..11717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 11653..11717 -
1695995701.271846-CDS-E-fasciculatus_F_contig1299:11652..117171695995701.271846-CDS-E-fasciculatus_F_contig1299:11652..11717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 11653..11717 -
1622927803.2279766-CDS-E-fasciculatus_F_contig1299:12304..123591622927803.2279766-CDS-E-fasciculatus_F_contig1299:12304..12359Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 12305..12359 -
1695995701.2832904-CDS-E-fasciculatus_F_contig1299:12304..123591695995701.2832904-CDS-E-fasciculatus_F_contig1299:12304..12359Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 12305..12359 -
1622927803.2394345-CDS-E-fasciculatus_F_contig1299:12760..128701622927803.2394345-CDS-E-fasciculatus_F_contig1299:12760..12870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 12761..12870 -
1695995701.2934232-CDS-E-fasciculatus_F_contig1299:12760..128701695995701.2934232-CDS-E-fasciculatus_F_contig1299:12760..12870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 12761..12870 -
1622927803.2494092-CDS-E-fasciculatus_F_contig1299:15613..157731622927803.2494092-CDS-E-fasciculatus_F_contig1299:15613..15773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 15614..15773 -
1695995701.3033364-CDS-E-fasciculatus_F_contig1299:15613..157731695995701.3033364-CDS-E-fasciculatus_F_contig1299:15613..15773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 15614..15773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1299.2266.1

>prot_E-fasciculatus_F_contig1299.2266.1 ID=prot_E-fasciculatus_F_contig1299.2266.1|Name=mRNA_E-fasciculatus_F_contig1299.2266.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
MLIGGVNDRRAVRLAIATWGVCSFPVALGLHTPTSPPPPPAPGFTRLLGG
TSTGDAHGWTSAISSPQATTKASGGANTGHVVDDDGLSTLGEQPGHRRLQ
GTTSASNSGETPAPSTDPLTPGPGFTLGTF
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mRNA from alignment at E-fasciculatus_F_contig1299:11653..15773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1299.2266.1 ID=mRNA_E-fasciculatus_F_contig1299.2266.1|Name=mRNA_E-fasciculatus_F_contig1299.2266.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4121bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1299:11653..15773- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCATCGGCGGGGTGAATGACCGCCGCGCCGTCCGCCTGGCGATCGC
TACCTGGGGCGTCTGTTCATTTCCCGTTGCCCTTGGGCTGCACACCCCAA
CATCACCACCGCCGCCGCCTGCACCTGGTTTTACCAGGCTCCTTGGGGGG
ACATCGACAGGTGACGCCTATTTGATATTGGGAGAAGCTGGTATGCTTCG
GGGCATCTGTGGTAGCTGTTAACGGCTGATAATGAGGCCAGAGCTCCACC
ATCGTGGTCAACTTTCTGTTTTGAGACACGGTTCGGAGTCGTGGGCGATT
GGTTCGTCTAGACCTCGTGTGCGGGGGTCTTGCAGTGAACGGCTTGCTTG
GTGTAAAAAAATACAAAAAAGAAAAACCATTGCGCTGCGAGCTAAGGTGT
AGCTGCTGTCGGTTCCAAAAGCAGATTAGACACGTTTGTCTGTGGTAGAT
GTGGACTGGGCCGGCGCTGAAAGGGCGACGTTTACTTGACGTATGTATGC
GGCCCCTATACCATGTATTCTATGCATACGAGAGCTTGAATGTCGCCTTC
ATCAGAATAATACTCGTTGCGGGCGCTCACCCTCTCTGTAACCCAAACAT
TTCGCGCCGAGGTCAGAGAAACTAGTGCTGCTGCTATAACTTCACGTTTT
TGCCTCCAGCGTGCACAACACGGCGGGTGAAAACTTGGGTCATTGGGATG
GGGTCGGGGCAACTCACTGCAAGTAGGGCGCACATACATGTTGTTGGGCC
CGCATGCTGTGTCAATTAATAGCGTCATGTCATAGGAGGGGGAAATGCTG
TTCAACAGATGGCAGACCCAACTCCCGGCTTGAAGGACCCACAATAGTAA
TAAGACAAAGTACAGATTTGTTAATCCTTCCCCAGAATCTCAAGAATTTT
CTTGGGGCTGTAGACTAACACTAGATATTTTTACGTATGTCAGTGTCAAA
CAATGCCAAGAAGGGCAAGTACACACGTCAGCATTATGAGTGAGTGTGAA
CACAGCTGCAGCACCAGGAGTACAAGCAGAAACATGTAAACATGTAGTTT
CCAGCAGTTGAGCTATGCCGTGGCGGTGTTAGCAGAGAGGGGTGCAGAGC
AATGCAGCCGTGCAGACCGCCGAGCCTCAGGTTGGGACCGACGTTGGCAC
GCACAAATATTTACAGACCCTTGTGAGTATTTTTCATCAGCCCAAGCATG
AGGCAACACCCAGCGATATGGCACCACGTCTGGCTGCCGGTTTTACAGAA
AGTCATCAGGACAGAGAGGTGGTGTGGTATGTAGCTCTCTGGGTGTAGCG
AGTCTTAGGTGTAGAGGCACAGAGATACGAATGAGCTCTATATATAAGTG
CGAGGGTTGGTTGTTCTTGCAGCCTAATTCCTACAGAAAGGTCCTTGTCC
GTCGATGAAAAAGTTCTCGCCGGGCTCCCTTAAGTATGGAGTACCTATCT
GACTTAAATCCGTACTAAACACAAGTTTATACGGAGAGATTGAGACAGAA
AGTTAGTCTATCTGGGTTAGTACGGAGAGATTGAGACAGAAAGAGGTACT
GGATAGAGAGACCGGGATGGTTTCTAATGTGAAGACGTGAAGACAACAAC
AAACAACCCAACCCAAGTTCCCACATCATGATGTATTGATTTGCGTGGTT
TCCAGAGCGACTCGTCGGCCGATCCGCTCCTCCTGCTGAATGGATGTGGC
ACGCTGCAATCAACCTTTGACGCACGCTGCAATCAACCTACTCACACATC
ATCACCGATTATAGACTTTTTCCTAGTGCTACAATTGGCCGCTGGATCAT
TTTTTTTCGTTGTGGAAGGAAGGCTGAGGCTGGGTCATGCCGATACTTGC
CCAAGTGTCCAACCAATAGTGACCCGTCATACATACATGTTTCTGCTTCT
GGTTGTGCATACATACAAAACGTGCATGCATGCCCAGAGCCTTGCACTTT
GCTCTTGTCCTCTTTTTCCGTTGCTCGCGGTGGTCTCTCTCCACCCACTG
TACAATCGCCACGTGTCTCTTTATCTTCTTCTTATTCGTACTTTGACTTC
TGGGTGAGAGCAGTCACAACTGGTTGATTGTCCTCAAAACTTTTTTTTTA
TGTTTTGACGTGTATGACGCCCTTCTAGGTCTGAATTCCGTCGCGATAAA
GTTCAACTACTAGACTAAAGGCCGAGCCACTTACTTGCAGTATTTGCTGG
TGGTTCGGTGTGTGTATGAATGTGTCGATTCGTTCCTGTGTTGGTACAAA
ATATGAACGCGTTGTGGCTATGTTGCCATCTTGTGTCTTGTTGCGTCTAT
CACTTGGAAATTAACTTATTTTACGCGAGAAGAGAGCAACGCTCTCGTCC
CTCAAACACACGATCTAGACTATGTATCGCTTTCCATTATGACCAGGCAT
GAACGGAAGCGAGAGAACGACCCACTCTCGGCATAAAAAAGCTATGCCGC
GGCATGTGAACCCCTGACCTAATCCACTAGATGATTACGAGGATGCCAAC
TACATGTTTAAGTACAACACAGTGGACCACGAGAAACGTGAAGACAACAA
CGACATTACTCGGTGTGTCGATACGGTGATCCGGAGAGGAAATCCATCTG
TCTCAGCCGAAGATATACCCTGTGGGTCGATCTCCAATATCTTCGAGCTG
CATCTATTTTTTCGTTCCTTCACCCATAGACTGTAGCCTACAGAAAATAT
TCGTCGAGGCAGGCCTCTCTTTCAGGGTATCGCTTGTGTTCCTTGGTTGA
CAGGAGGGAGATAGATTTTGTTTCCAAATATATAGACCTTGCGGTGGCAA
TCGATCAAGGCGATGTCCGCAGGGATTGGGATCGCCGCACTCAACTCGCA
ATACCTAGCAGTGGCATCAATATGCTTTGCCTTTGACATTTCAACTATCG
CAGGTGACGCACATGGCTGGACCTCGGCAATATCATCGCCGCAAGCGACA
ACGAAGGCTTCGGGAGGCGCGAACACCGGACACGTTGTCGACGATGATGG
GCTTTCAACATTGGTAAGCAACTATACATGTAGTTTGCACGGCATCTTTG
GATCCAGCGCGTACGGTAGAGACAATAACATTGCCGTGGCGACTTCGATG
GAAGTTGCATTTTCCATGGAATTTCATTGATATGGTTTTCCATGGCGTAC
CGTGGCATTCATGCAGGTTCCCGCGGAAACCGTGTAAACTTCGTTGGAGT
TCCAGCGTTAACCCAACCAGGGCGTTTCATCGAATGTTCCGTGGAAATCG
CTGGGTAATTTTCGATGGAATCTACCACATGTAGGCAGGTCCTCAAACTT
CTTTCTTCGCTTGGTTTTCAACAAGGTGGTCGCCCACCAAGTGTGCATGA
TAACGGTTGTGGGAAAAATGGTTTATGAAGAGTTGCCCGACCGATGTGTT
TAACCCACCCTCAGGGAGAACAACCTGGGCACCGCAGACTGCAGGGCACC
ACAAGCGCCAGCAACAGCGGTAAGCACGAATGATTGAGAACGGCTAGGGA
GTTGGGAGCTGACAGTACAGTAGGTCTCCGCTTCAGTATTTAGACTCTGT
TGGTCATACTCTCTAGCACTCCGTCGCGAAATGAACGTACAGGAAGCGAC
AGTCACACCACCTGCGGGAGCGGGAGCCTCCCTGGTTTGGTGTCGTTTGC
TTGTTGGCAAAACAATATTTCCGTTCGCCAGAGGGGGCTTCTGTCTGAAG
TACCGTCAGGCGCTCCGCCACGAAAAAATGACGGACCCGTTCTCTTGAGC
AGTTCTGTAGGAGAATGAGAACATGGAAACACGGAGTTTTAGCAGGAGGG
AGGGGCGATTTGCTTGAGCTGCCGATGTCAAGTATGTGGATTTGCGGCAC
ACCTCCTCGCCTTTCTCGCCCAGTGCTCTCGTGTTTGTTCGCAGACTTCC
CACCCATTTCTTGTTTGACCCCCGGGTAGTCTGTTGTTTCAAAGGTTCCC
GTGTGTCCCACGAATATGTACGTCTAAGTCATTACCTCCTTGTGTCGGTT
ACAGACACTTCTAGACACAATATCTTACCATGAACTTTGTTCGTCGACGC
ACGCAGGGGAAACTCCGGCTCCCTCTACGGATCCATTGACCCCAGGACCT
GGATTTACTTTAGGTACGTTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1299:11653..15773-

>mRNA_E-fasciculatus_F_contig1299.2266.1 ID=mRNA_E-fasciculatus_F_contig1299.2266.1|Name=mRNA_E-fasciculatus_F_contig1299.2266.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1299:11653..15773- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCATCGGCGGGGTGAATGACCGCCGCGCCGTCCGCCTGGCGATCGC
TACCTGGGGCGTCTGTTCATTTCCCGTTGCCCTTGGGCTGCACACCCCAA
CATCACCACCGCCGCCGCCTGCACCTGGTTTTACCAGGCTCCTTGGGGGG
ACATCGACAGATGCTCATCGGCGGGGTGAATGACCGCCGCGCCGTCCGCC
TGGCGATCGCTACCTGGGGCGTCTGTTCATTTCCCGTTGCCCTTGGGCTG
CACACCCCAACATCACCACCGCCGCCGCCTGCACCTGGTTTTACCAGGCT
CCTTGGGGGGACATCGACAGGTGACGCACATGGCTGGACCTCGGCAATAT
CATCGCCGCAAGCGACAACGAAGGCTTCGGGAGGCGCGAACACCGGACAC
GTTGTCGACGATGATGGGCTTTCAACATTGGTGACGCACATGGCTGGACC
TCGGCAATATCATCGCCGCAAGCGACAACGAAGGCTTCGGGAGGCGCGAA
CACCGGACACGTTGTCGACGATGATGGGCTTTCAACATTGGGAGAACAAC
CTGGGCACCGCAGACTGCAGGGCACCACAAGCGCCAGCAACAGCGGGAGA
ACAACCTGGGCACCGCAGACTGCAGGGCACCACAAGCGCCAGCAACAGCG
GGGAAACTCCGGCTCCCTCTACGGATCCATTGACCCCAGGACCTGGATTT
ACTTTAGGTACGTTTGGGAAACTCCGGCTCCCTCTACGGATCCATTGACC
CCAGGACCTGGATTTACTTTAGGTACGTTT
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