mRNA_E-fasciculatus_F_contig1299.2265.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1299.2265.1
Unique NamemRNA_E-fasciculatus_F_contig1299.2265.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1299.2265.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-6
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 3 
Query:    3 DGGDCCDCDCVDGSYTCGFYSGYDCQDVDSAC 98
            DGGDCC+C C DG YTCG Y GY C D D+ C
Sbjct:  115 DGGDCCECTCEDGEYTCGQYYGYACIDPDATC 146
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BLAST of mRNA_E-fasciculatus_F_contig1299.2265.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.800e-6
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 3 
Query:    3 DGGDCCDCDCVDGSYTCGFYSGYDCQDVDSAC 98
            DGGDCC+C C DG YTCG Y GY C D  +AC
Sbjct:    4 DGGDCCECTCEDGEYTCGQYVGYACIDPGAAC 35
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BLAST of mRNA_E-fasciculatus_F_contig1299.2265.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 3 
Query:    3 DGGDCCDCDCVDGSYTCGFYSGYDCQDVDSAC 98
            DGGDCC+CDCVD +Y CG   GYDC D  S+C
Sbjct:  432 DGGDCCECDCVDATYDCGVV-GYDCLDPTSSC 462
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BLAST of mRNA_E-fasciculatus_F_contig1299.2265.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 47.0 bits (110), Expect = 8.770e-5
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 3 
Query:    3 DGGDCCDCDCVDGSYTCGFYSGYDCQDVDSAC 98
            DGGDCC+C CVD S+TCG Y G+ C D  +AC
Sbjct:   20 DGGDCCECTCVDASFTCG-YGGFACIDPSAAC 50
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1299.2265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEP6_ECTSI1.490e-665.63Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5K4R2_9PHAE3.800e-665.63LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVP4_9PHAE1.830e-565.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK5_9PHAE8.770e-562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1299contigE-fasciculatus_F_contig1299:912..1287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size129
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.1550343-CDS-E-fasciculatus_F_contig1299:911..10021622927803.1550343-CDS-E-fasciculatus_F_contig1299:911..1002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 912..1002 -
1695995701.2549682-CDS-E-fasciculatus_F_contig1299:911..10021695995701.2549682-CDS-E-fasciculatus_F_contig1299:911..1002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 912..1002 -
1622927803.1742284-CDS-E-fasciculatus_F_contig1299:1249..12871622927803.1742284-CDS-E-fasciculatus_F_contig1299:1249..1287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 1250..1287 -
1695995701.2633212-CDS-E-fasciculatus_F_contig1299:1249..12871695995701.2633212-CDS-E-fasciculatus_F_contig1299:1249..1287Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1299 1250..1287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1299.2265.1prot_E-fasciculatus_F_contig1299.2265.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1299 912..1287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1299.2265.1

>prot_E-fasciculatus_F_contig1299.2265.1 ID=prot_E-fasciculatus_F_contig1299.2265.1|Name=mRNA_E-fasciculatus_F_contig1299.2265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=43bp
MMGAIVATATASMGVTPAAFILVTIAKMSIRHVTVGGAPDRP*
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mRNA from alignment at E-fasciculatus_F_contig1299:912..1287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1299.2265.1 ID=mRNA_E-fasciculatus_F_contig1299.2265.1|Name=mRNA_E-fasciculatus_F_contig1299.2265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=376bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1299:912..1287- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGGGGCGATTGTTGCGACTGCGACTGCGTCGATGTGAGGGCTATC
ACTAGGGTCGATTTCGTTCGTAGGAGTGGCCTACGGCGTGTTGCGCTTGC
GGTTGGTGTTGTATGTCGATGGTCGTTGATATTGGGTTGCTTGTCGCGCG
ATGCACCACACGCATGCCCCCAACGTCGCGTCCTACACTTACGCCATTGA
TCGTATCCTCGACGATGGCAAGATACGTGTTCATCCCGATGATGTTTGCC
GCACCTTCGCCTGCTTCTTGTTCGGCAAAATACAGGGGAGTTACACCTGC
GGCTTTTATTCTGGTTACGATTGCCAAGATGTCGATTCGGCATGTTACGG
TGGGTGGCGCTCCCGATAGACCTTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1299:912..1287-

>mRNA_E-fasciculatus_F_contig1299.2265.1 ID=mRNA_E-fasciculatus_F_contig1299.2265.1|Name=mRNA_E-fasciculatus_F_contig1299.2265.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1299:912..1287- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGGGGGCGATTGTTGCGACTGCGACTGCGTCGATATGATGGGGGCG
ATTGTTGCGACTGCGACTGCGTCGATGGGAGTTACACCTGCGGCTTTTAT
TCTGGTTACGATTGCCAAGATGTCGATTCGGCATGTTACGGTGGGTGGCG
CTCCCGATAGACCTTAAGGGAGTTACACCTGCGGCTTTTATTCTGGTTAC
GATTGCCAAGATGTCGATTCGGCATGTTACGGTGGGTGGCGCTCCCGATA
GACCTTAA
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