mRNA_E-fasciculatus_F_contig12989.2264.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12989.2264.1
Unique NamemRNA_E-fasciculatus_F_contig12989.2264.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12989.2264.1 vs. uniprot
Match: D7G5L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L9_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 2.840e-62
Identity = 198/333 (59.46%), Postives = 207/333 (62.16%), Query Frame = 1 
Query:    1 KTKPPIAHHSFSSXXXXXXXXLPSPSAPPPWVKDLPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKEAFLKTVFVLRQGTAAGVGTGNWRKSGGRGDDCSPSRVGHPSDCGG---DAPVPVTAVVPARTDSGLDGGVTPGAVAAEEKTDHRAMMRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEAARSLGKVPRKSSKSSLSSPXXXXXXXXXXXXXGSEERAATPSPTVTSSVSVLDIGALQSPE 990
            KTKPPIAHHS SS        LPSPSAPP WVK+LPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKE FLKTVF  RQ  AAGVGTG+W+KSGGRGD CS   VG PS  GG    A    T VV      GLDG V PGAVAA+E+ D  AM RV+                      XXXXXXXXX                                               XXXXXXXXXXXXXXXX        VEEAARS+GKVPRKSS+ SLSSPXXXXXXXXXXXXX +  RAAT SPTVTSSVSVLDIGALQS E
Sbjct:  115 KTKPPIAHHSSSSSS------LPSPSAPP-WVKELPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKETFLKTVFNSRQ--AAGVGTGSWKKSGGRGDGCS---VGRPSVGGGVGDAASAAATGVVWPLL--GLDGEVAPGAVAAQERIDPPAMGRVQEEVVPGGNVGLLADNPTRIQQQXXXXXXXXXAVAETGAGRNTGESGDHEEHKISKGDGGRTTAVDATGEEAPHSSTDSXXXXXXXXXXXXXXXXGGG-----VEEAARSVGKVPRKSSRKSLSSPXXXXXXXXXXXXXXA--RAATMSPTVTSSVSVLDIGALQSSE 426
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BLAST of mRNA_E-fasciculatus_F_contig12989.2264.1 vs. uniprot
Match: A0A6H5KDX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX6_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.840e-53
Identity = 220/333 (66.07%), Postives = 228/333 (68.47%), Query Frame = 1 
Query:    1 KTKPPIAHHSFSSXXXXXXXXLPSPSAPPPWVKDLPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKEAFLKTVFVLRQGTAAGVGTGNWRKSGGRGDDCSPSRVGHPSDCGGD---APVPVTAVVPARTDSGLDGGVTPGAVAAEEKTDHRAMMRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEAARSLGKVPRKSSKSSLSSPXXXXXXXXXXXXXGSEERAATPSPTVTSSVSVLDIGALQSPE 990
            KTKPPIAHHS  S        LPSPSAPP WVK LPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKEAFLKTVF  RQ  AAGVGTG+W+KS GRG D S   VG PS  GG    A  P    V      GL G V  G VAAE++ D  AM RV+                     XXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   AARS+GKVPRKSS+  LSSP XXXXXXX       E+RAAT SPTVTSSVSVLDIGALQ  E
Sbjct:  108 KTKPPIAHHSSCSSS------LPSPSAPP-WVKQLPPVRDGRRQFASGEIIPFLEQHVYPEGGVAEAKRARRREKEAFLKTVFNSRQ--AAGVGTGSWKKSSGRGADYS---VGCPSVGGGAGDAASTPAAGGVGPLL--GLLGEVFRGNVAAEKRVDPPAMARVQQKVVPGGYAGLLADNPTRIQQXXXXXXXXXXXXXVAETGAGRETGESGDHEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARSVGKVPRKSSRMLLSSPSXXXXXXXLQKR---EQRAATMSPTVTSSVSVLDIGALQPSE 423
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12989.2264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5L9_ECTSI2.840e-6259.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDX6_9PHAE2.840e-5366.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12989contigE-fasciculatus_F_contig12989:2760..3752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008970.1
Exons1
Model size993
Cds size993
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.1094189-CDS-E-fasciculatus_F_contig12989:2759..37521622927803.1094189-CDS-E-fasciculatus_F_contig12989:2759..3752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12989 2760..3752 -
1695995701.2452896-CDS-E-fasciculatus_F_contig12989:2759..37521695995701.2452896-CDS-E-fasciculatus_F_contig12989:2759..3752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12989 2760..3752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12989.2264.1prot_E-fasciculatus_F_contig12989.2264.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12989 2760..3752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12989.2264.1

>prot_E-fasciculatus_F_contig12989.2264.1 ID=prot_E-fasciculatus_F_contig12989.2264.1|Name=mRNA_E-fasciculatus_F_contig12989.2264.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=331bp
KTKPPIAHHSFSSSSSSSSSSLPSPSAPPPWVKDLPPVRDGRRQFASGEI
IPFLEQHVYPEGGVAEAKRARRREKEAFLKTVFVLRQGTAAGVGTGNWRK
SGGRGDDCSPSRVGHPSDCGGDAPVPVTAVVPARTDSGLDGGVTPGAVAA
EEKTDHRAMMRVEEEVVPGGNGGLLVEHPTRIQQHHEQQEQQEQQEKQQP
KHAVAETGAGGNTSESGYHEERRISQGGGGRTTTLDAAGEEAPHSSTDNQ
QQRQRRRRSSKEGGGVEEAARSLGKVPRKSSKSSLSSPAPAPAPAAAAVS
EGSEERAATPSPTVTSSVSVLDIGALQSPE*
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mRNA from alignment at E-fasciculatus_F_contig12989:2760..3752-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12989.2264.1 ID=mRNA_E-fasciculatus_F_contig12989.2264.1|Name=mRNA_E-fasciculatus_F_contig12989.2264.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=993bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12989:2760..3752- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAACAAAACCGCCAATCGCACACCACTCCTTCTCCTCCTCCTCCTCCTC
CTCCTCCTCATCCCTCCCATCCCCATCGGCGCCGCCGCCTTGGGTTAAGG
ACCTACCCCCCGTGCGCGACGGCCGGAGGCAGTTCGCGTCTGGCGAGATC
ATCCCCTTCCTGGAGCAGCACGTGTATCCAGAGGGGGGAGTGGCGGAGGC
CAAGCGGGCGCGCCGGCGAGAAAAGGAGGCGTTCTTGAAGACCGTTTTCG
TCTTGCGGCAGGGAACGGCGGCGGGCGTAGGAACCGGGAACTGGAGGAAG
AGCGGCGGGAGAGGAGACGACTGTTCGCCGTCGAGAGTTGGGCACCCTTC
CGATTGTGGTGGGGATGCTCCAGTTCCCGTTACGGCTGTTGTTCCGGCTC
GGACGGACTCGGGTCTGGATGGCGGAGTTACCCCCGGTGCCGTCGCTGCA
GAGGAAAAGACCGACCATCGAGCGATGATGAGGGTAGAGGAAGAGGTTGT
GCCAGGCGGCAATGGGGGGTTGCTGGTGGAGCACCCCACTCGTATTCAAC
AGCATCATGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGAAACAACAACCA
AAGCACGCCGTGGCGGAAACGGGGGCGGGAGGGAACACGAGCGAGAGCGG
GTACCACGAAGAGCGAAGAATTTCTCAAGGAGGCGGCGGCAGAACAACCA
CACTTGACGCCGCGGGTGAAGAAGCGCCTCACAGTTCAACAGACAACCAA
CAGCAGCGGCAGCGGCGGCGGAGGTCATCGAAAGAAGGGGGAGGGGTTGA
GGAAGCGGCGCGGAGCCTCGGGAAAGTCCCGAGAAAATCGTCGAAATCGT
CGTTGTCGTCGCCGGCCCCGGCCCCGGCTCCGGCGGCGGCGGCGGTTTCA
GAGGGAAGCGAGGAGAGAGCGGCGACACCTTCTCCGACTGTGACGTCATC
TGTCAGCGTGCTCGATATCGGCGCTCTCCAGTCTCCAGAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12989:2760..3752-

>mRNA_E-fasciculatus_F_contig12989.2264.1 ID=mRNA_E-fasciculatus_F_contig12989.2264.1|Name=mRNA_E-fasciculatus_F_contig12989.2264.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1986bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12989:2760..3752- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAACAAAACCGCCAATCGCACACCACTCCTTCTCCTCCTCCTCCTCCTC
CTCCTCCTCATCCCTCCCATCCCCATCGGCGCCGCCGCCTTGGGTTAAGG
ACCTACCCCCCGTGCGCGACGGCCGGAGGCAGTTCGCGTCTGGCGAGATC
ATCCCCTTCCTGGAGCAGCACGTGTATCCAGAGGGGGGAGTGGCGGAGGC
CAAGCGGGCGCGCCGGCGAGAAAAGGAGGCGTTCTTGAAGACCGTTTTCG
TCTTGCGGCAGGGAACGGCGGCGGGCGTAGGAACCGGGAACTGGAGGAAG
AGCGGCGGGAGAGGAGACGACTGTTCGCCGTCGAGAGTTGGGCACCCTTC
CGATTGTGGTGGGGATGCTCCAGTTCCCGTTACGGCTGTTGTTCCGGCTC
GGACGGACTCGGGTCTGGATGGCGGAGTTACCCCCGGTGCCGTCGCTGCA
GAGGAAAAGACCGACCATCGAGCGATGATGAGGGTAGAGGAAGAGGTTGT
GCCAGGCGGCAATGGGGGGTTGCTGGTGGAGCACCCCACTCGTATTCAAC
AGCATCATGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGAAACAACAACCA
AAGCACGCCGTGGCGGAAACGGGGGCGGGAGGGAACACGAGCGAGAGCGG
GTACCACGAAGAGCGAAGAATTTCTCAAGGAGGCGGCGGCAGAACAACCA
CACTTGACGCCGCGGGTGAAGAAGCGCCTCACAGTTCAACAGACAACCAA
CAGCAGCGGCAGCGGCGGCGGAGGTCATCGAAAGAAGGGGGAGGGGTTGA
GGAAGCGGCGCGGAGCCTCGGGAAAGTCCCGAGAAAATCGTCGAAATCGT
CGTTGTCGTCGCCGGCCCCGGCCCCGGCTCCGGCGGCGGCGGCGGTTTCA
GAGGGAAGCGAGGAGAGAGCGGCGACACCTTCTCCGACTGTGACGTCATC
TGTCAGCGTGCTCGATATCGGCGCTCTCCAGTCTCCAGAGTAGAAAACAA
AACCGCCAATCGCACACCACTCCTTCTCCTCCTCCTCCTCCTCCTCCTCC
TCATCCCTCCCATCCCCATCGGCGCCGCCGCCTTGGGTTAAGGACCTACC
CCCCGTGCGCGACGGCCGGAGGCAGTTCGCGTCTGGCGAGATCATCCCCT
TCCTGGAGCAGCACGTGTATCCAGAGGGGGGAGTGGCGGAGGCCAAGCGG
GCGCGCCGGCGAGAAAAGGAGGCGTTCTTGAAGACCGTTTTCGTCTTGCG
GCAGGGAACGGCGGCGGGCGTAGGAACCGGGAACTGGAGGAAGAGCGGCG
GGAGAGGAGACGACTGTTCGCCGTCGAGAGTTGGGCACCCTTCCGATTGT
GGTGGGGATGCTCCAGTTCCCGTTACGGCTGTTGTTCCGGCTCGGACGGA
CTCGGGTCTGGATGGCGGAGTTACCCCCGGTGCCGTCGCTGCAGAGGAAA
AGACCGACCATCGAGCGATGATGAGGGTAGAGGAAGAGGTTGTGCCAGGC
GGCAATGGGGGGTTGCTGGTGGAGCACCCCACTCGTATTCAACAGCATCA
TGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGAAACAACAACCAAAGCACG
CCGTGGCGGAAACGGGGGCGGGAGGGAACACGAGCGAGAGCGGGTACCAC
GAAGAGCGAAGAATTTCTCAAGGAGGCGGCGGCAGAACAACCACACTTGA
CGCCGCGGGTGAAGAAGCGCCTCACAGTTCAACAGACAACCAACAGCAGC
GGCAGCGGCGGCGGAGGTCATCGAAAGAAGGGGGAGGGGTTGAGGAAGCG
GCGCGGAGCCTCGGGAAAGTCCCGAGAAAATCGTCGAAATCGTCGTTGTC
GTCGCCGGCCCCGGCCCCGGCTCCGGCGGCGGCGGCGGTTTCAGAGGGAA
GCGAGGAGAGAGCGGCGACACCTTCTCCGACTGTGACGTCATCTGTCAGC
GTGCTCGATATCGGCGCTCTCCAGTCTCCAGAGTAG
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