mRNA_E-fasciculatus_F_contig12987.2263.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12987.2263.1
Unique NamemRNA_E-fasciculatus_F_contig12987.2263.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12987.2263.1 vs. uniprot
Match: A0A6H5JK59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.180e-24
Identity = 84/106 (79.25%), Postives = 86/106 (81.13%), Query Frame = 3 
Query:   21 MALVGSSRPLLELSSCTACAALEEERALLKSAEQKEVAGLSKVGQERXXXXXXXXXXXXXXXXXXSTPESSDSRPPG----------GIVVDAAITMESAHAGNGE 308
            MALVGSSRPLLEL+SCTACAALEEERALLKSAEQKEVAGLSKVGQERXXXXXXXXXXXXXXXXX STPE +D               GIVVDAAI  ES HAGNGE
Sbjct:  971 MALVGSSRPLLELTSCTACAALEEERALLKSAEQKEVAGLSKVGQERXXXXXXXXXXXXXXXXXGSTPERNDPXXXXXXXXXXXXXXGIVVDAAIATESTHAGNGE 1076
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BLAST of mRNA_E-fasciculatus_F_contig12987.2263.1 vs. uniprot
Match: D8LS72_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS72_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.200e-10
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   21 MALVGSSRPLLELSSCTACAALEEERALLKSAEQKEVAG 137
            MALVGSSRPLLEL+SCTACAALEEERALLKSAEQKE  G
Sbjct:  933 MALVGSSRPLLELTSCTACAALEEERALLKSAEQKEGLG 971
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12987.2263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK59_9PHAE4.180e-2479.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS72_ECTSI2.200e-1092.31Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12987contigE-fasciculatus_F_contig12987:752..3303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927802.6684525-CDS-E-fasciculatus_F_contig12987:751..8791622927802.6684525-CDS-E-fasciculatus_F_contig12987:751..879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 752..879 +
1695995701.226176-CDS-E-fasciculatus_F_contig12987:751..8791695995701.226176-CDS-E-fasciculatus_F_contig12987:751..879Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 752..879 +
1622927802.6860332-CDS-E-fasciculatus_F_contig12987:3017..33031622927802.6860332-CDS-E-fasciculatus_F_contig12987:3017..3303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 3018..3303 +
1695995701.2358148-CDS-E-fasciculatus_F_contig12987:3017..33031695995701.2358148-CDS-E-fasciculatus_F_contig12987:3017..3303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12987 3018..3303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12987.2263.1prot_E-fasciculatus_F_contig12987.2263.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12987 752..3303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12987.2263.1

>prot_E-fasciculatus_F_contig12987.2263.1 ID=prot_E-fasciculatus_F_contig12987.2263.1|Name=mRNA_E-fasciculatus_F_contig12987.2263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp
GGGGGRAWPWWGRRGRCWSCRLAPRARRWRRRGPCSRAPSRKRLRVYRRW
GRSAGRGGRPPERPGNGGATPAQRRRAATPAPPAASLLMRQSRWRALMPA
TGRRGRGERRSNEVALRLRMPPPPPPPPPPLAMTAAGE
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mRNA from alignment at E-fasciculatus_F_contig12987:752..3303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12987.2263.1 ID=mRNA_E-fasciculatus_F_contig12987.2263.1|Name=mRNA_E-fasciculatus_F_contig12987.2263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12987:752..3303+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGGGGCGGGGGCAGGGCATGGCCCTGGTGGGGTCGTCGCGGCCGCTG
CTGGAGCTGTCGTCTTGCACCGCGTGCGCGGCGCTGGAGGAGGAGAGGGC
CCTGCTCAAGAGCGCCGAGCAGAAAGAGGTGTGTGTGTGTGTGTGTGTGC
GTGTGCGTGTGTGTCTGTGTATGTGTGCATGTACAAGACCTCCCCCTGGA
GTGGGCTAAGAGAGCACCGCGGCAGGAGGTGAAAAAAGAACATGCGTATT
AAAGCACATAAGAGTGAGATGAAAACAGATGTTTTAGCATGATAAGAATT
TTCGATAAAAGGGTTCGCGCCATTGTTGGGAGCTCGGCGCGAATTGTTTT
CGTCGATAAAGACCCTTCTGTAGTAATTTGTCTGCAAGAACAGCACGCGA
ACAATTTGTTTTTTTCGCCCCAAATACATGCAGACCTCTTGAGGATATCC
GACCCTCCCACCTAGAGCTCACCCATCTCTGCGCCTCTACACGTAAGACT
CGCTAACACCCAGAGAGCTAACTACTACACCACACCAAAGTGTCCTGATG
ATCTTACGTAAAACCGGCCAGCCGTGGTGTCATATCGCTGTTGCCTCATG
CTTGGGTTGATAAAAGACGTTGCTCTGGTCTATACTCTATTTTCTGGATT
CTTGTTGGTTGAACGCCCGCATGCGGCACGCACGATGCGTATGTATGTAT
GTATGTATGTATGTAGGTATGTATGTGTGGTATGTGTTCCACATGCACAT
GTATGTGCGTGCCTAAGTCCCAACCTGAGGCTCGGCGGTCTGCACCGTGT
GCATTGCTCTGCACCTCTACTGGCACCACCACGACATGGCTCGACTGCTG
GAAACTACTCATGTTTCTGCTTACTGCTGCGGTAGTTAAGCAGTCGGATT
CATGGGCAGCGAAAGAACGACTTGGGGGCGAGGGCGGCGTAAAGCGGTGT
TTTTCTCCAAGCAAACGCGCATACACAACACCCTCGAAAGGGCAGCGAAT
AACTACGTGTATTTGTGTGTTTCCAGCGTTACAAGAGCGTGAGGTTTGAG
TGACTGTGTAGCAGCACCTGAGTGTCTCAAAATCCGGTGGGAGTATGCAC
CTTATCAGGCATGTGGGCGCTCGACTAAGAACTGCATTGGGGATGATGCG
AGAGGCGACAGCAGTCCACAACGTCTCCCGCATGGTATGCGTAGAACTGA
ACAAAAAAAAAAAAAAACACGCAACTTACACCGTCAAGCAGTCGCCGGAA
AAACGACTTGGAAAATAGAGTATGGTTGTCGCCCAGTAAACGCACACACG
CTGGCCACGCTGGCAGAAGCGCTGTATTCGCGCGTTTCCAGCTTGCAAAA
CAGCAAACAGCAAACAGCAGGACAGCAATGGTGCGTCAACCCCCGGAGAG
AAGAGGCACGCAATGGTAAAGGACCACGAACAAAGTAGCAAAATTAATTG
CGGAACGTGCAGAGTCGAAAAGCCTCTTCTCGTGCCCCGCACGTACACGC
TCGCTCCACAGCCGCTCTGACCGCTGCCGCGCCAACGCTAAGCTGTTGGC
ATGTGCTGACATACTACTGCTGTTCAAATTCAGAAACAGCTGTCAACGCT
TACGTTTTGGCTGCTACAGCTGTTCACACACACAACGCTGTGTGTGTACT
TCCTTCTTGACATGGTGATTGACACTGTCGTACGTACATGGTAATCTTTA
CAGCACAAATGAAAATTCTTGATTTTCCTGGGAAGGATTTACTGTACCTA
GATGTACGTCGGCGGCTTTGCTTTGTTTGTAGTGTGTTGTTCGCGTGAAA
GTTGCTGGCGCTCCTCTGTTGTGAGGGTTAGGCGCTCTCCGGGGGCTTGG
TTGGTGCCTGCCGGCCGTGTATTGCGCTTGGCGTCGTCATGTCATGAGGT
CAAGGGGAGCCAACCACTTTCGATTCCTGCGAGCTGAGGAAGCGTTGCAA
AAGAAGAGGCAGATGGGGGTACGTGATCTGCGTTCATGAGCGAAGGGAGG
ACGTGCTCTAATTTTGTACTTGGGGTTGTCTCTCTGGTTCTCGGTGATTG
TCCCGTGTGTCGGAAACAGGACGCCAGCGATGCTTGCGTCGCCCGCGCAA
GGCACACCGCCTCCCCTACCCCTCGCTTCCGCGCTCGTAAGCAACCCGGC
TTACCTTCCTCTCTAATTTTACTTGTACAGCCAGCGACATGTTGACACGC
TTCCACACCGCCTTCCTGCTCATACCTGCCTCCTGCCGTGGCGTCATTGT
TTTTTTTTGGGCTCAGGTTGCGGGTTTATCGAAGGTGGGGCAGGAGCGCC
GGAAGAGGAGGAAGGCCGCCCGAGAGGCCCGGCAACGGAGGCGCAACGCC
GGCTCAACGCCGGAGAGCAGCGACTCCCGCCCCCCCGGCGGCATCGTTGT
TGATGCGGCAATCACGATGGAGAGCGCTCATGCCGGCAACGGGGAGAAGG
GGGAGGGGGGAGAGGCGCTCGAACGAGGTGGCTCTGCGACTGCGGATGCC
ACCGCCGCCGCCGCCGCCGCCGCCACCGCTGGCGATGACAGCGGCGGGGG
AG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12987:752..3303+

>mRNA_E-fasciculatus_F_contig12987.2263.1 ID=mRNA_E-fasciculatus_F_contig12987.2263.1|Name=mRNA_E-fasciculatus_F_contig12987.2263.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12987:752..3303+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGGGGCGGGGGCAGGGCATGGCCCTGGTGGGGTCGTCGCGGCCGCTG
CTGGAGCTGTCGTCTTGCACCGCGTGCGCGGCGCTGGAGGAGGAGAGGGC
CCTGCTCAAGAGCGCCGAGCAGAAAGAGGGAGGGGGCGGGGGCAGGGCAT
GGCCCTGGTGGGGTCGTCGCGGCCGCTGCTGGAGCTGTCGTCTTGCACCG
CGTGCGCGGCGCTGGAGGAGGAGAGGGCCCTGCTCAAGAGCGCCGAGCAG
AAAGAGGTTGCGGGTTTATCGAAGGTGGGGCAGGAGCGCCGGAAGAGGAG
GAAGGCCGCCCGAGAGGCCCGGCAACGGAGGCGCAACGCCGGCTCAACGC
CGGAGAGCAGCGACTCCCGCCCCCCCGGCGGCATCGTTGTTGATGCGGCA
ATCACGATGGAGAGCGCTCATGCCGGCAACGGGGAGAAGGGGGAGGGGGG
AGAGGCGCTCGAACGAGGTGGCTCTGCGACTGCGGATGCCACCGCCGCCG
CCGCCGCCGCCGCCACCGCTGGCGATGACAGCGGCGGGGGAGGTTGCGGG
TTTATCGAAGGTGGGGCAGGAGCGCCGGAAGAGGAGGAAGGCCGCCCGAG
AGGCCCGGCAACGGAGGCGCAACGCCGGCTCAACGCCGGAGAGCAGCGAC
TCCCGCCCCCCCGGCGGCATCGTTGTTGATGCGGCAATCACGATGGAGAG
CGCTCATGCCGGCAACGGGGAGAAGGGGGAGGGGGGAGAGGCGCTCGAAC
GAGGTGGCTCTGCGACTGCGGATGCCACCGCCGCCGCCGCCGCCGCCGCC
ACCGCTGGCGATGACAGCGGCGGGGGAG
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