mRNA_E-fasciculatus_F_contig12982.2258.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: A0A6H5L2J2_9PHAE (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J2_9PHAE) HSP 1 Score: 326 bits (835), Expect = 3.370e-105 Identity = 170/190 (89.47%), Postives = 174/190 (91.58%), Query Frame = 1
Query: 40 MSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLST-------------GQAYELPPAMTARRRPRPEEPFEDF 570
MSRELEQSIVPAR+ENAYQMDAHN+ALQLRTLEGN+WLHVSWHPKGA RCHVGGDVPREKEQKAYTFSQTLRSQIRGLNI+SVGLARPMERVVRLDLAPRLD PATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLST GQAY LPPAMTARRRPRPEEPFEDF
Sbjct: 1 MSRELEQSIVPARVENAYQMDAHNLALQLRTLEGNIWLHVSWHPKGA-RCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIISVGLARPMERVVRLDLAPRLDTPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLSTERLADLSVLPPLAGQAYVLPPAMTARRRPRPEEPFEDF 189
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: D8LSX7_ECTSI (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX7_ECTSI) HSP 1 Score: 303 bits (776), Expect = 1.550e-96 Identity = 154/160 (96.25%), Postives = 157/160 (98.12%), Query Frame = 1
Query: 91 YQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLSTGQAYELPPAMTARRRPRPEEPFEDF 570
++MDAHNVALQLRTLEGNMWLHVSWHPKGA RCHVGGDVPREKEQKAYTFSQTLRSQI GLNIVSVGLARPMERVVRLDLAPRLD P+TFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLSTGQAYELPPAMTARRRPRPEEPFEDF
Sbjct: 29 HEMDAHNVALQLRTLEGNMWLHVSWHPKGA-RCHVGGDVPREKEQKAYTFSQTLRSQIWGLNIVSVGLARPMERVVRLDLAPRLDTPSTFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLSTGQAYELPPAMTARRRPRPEEPFEDF 187
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: A0A835YY55_9STRA (Fibronectin-binding protein A N-terminus-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY55_9STRA) HSP 1 Score: 147 bits (370), Expect = 2.700e-42 Identity = 72/116 (62.07%), Postives = 93/116 (80.17%), Query Frame = 1
Query: 7 LQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRL-DAP 351
LQSVDFTTALLM+REL +IVPAR+ENA+Q+DA N+A+ LR +EG+ WL++SWHP+GA RCH+G P+ KEQ++Y+FSQ LR+ ++GL +VSV LA P ERVV A RL DAP
Sbjct: 1 LQSVDFTTALLMTRELANAIVPARVENAFQIDAFNLAIGLRMVEGSEWLNISWHPQGA-RCHIGPAPPKGKEQQSYSFSQQLRTLLKGLTLVSVALAAPFERVVAFSFAQRLTDAP 115
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: A0A0G4ENT6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENT6_VITBC) HSP 1 Score: 157 bits (396), Expect = 3.480e-41 Identity = 82/178 (46.07%), Postives = 116/178 (65.17%), Query Frame = 1
Query: 1 ANLQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKSVRPLSTGQAYELPPAMTAR 534
A Q+VDFTT LL REL S+VP+ + +A+Q+D N+ L L TL G WLH+ W K A+R +G + P+ KE ++FS +R ++GL + ++ L +P R+V + APRL F+L+VE+ RSNV+LV+ D + +IAACAYQV S+SVRPL TGQ Y+LPPA + R
Sbjct: 77 AKKQTVDFTTLLLSCRELNASLVPSSVSSAFQLDDSNLLLGLTTLSGTRWLHLCWDAK-AARLALGENPPK-KEILPFSFSHNIRLALKGLTLTAISLPQPFNRIVEMTFAPRLGRDPFFKLFVEVQGPRSNVILVSAD----TNSIAACAYQVGASRSVRPLQTGQLYQLPPAQSGR 248
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: D8G6G5_9CYAN (Rqc2 homolog RqcH n=2 Tax=Microcoleaceae TaxID=1892252 RepID=D8G6G5_9CYAN) HSP 1 Score: 147 bits (370), Expect = 6.270e-38 Identity = 82/175 (46.86%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 7 LQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKS-VRPLSTGQAYELPPAMT 528
+Q VDFTT + EL +PAR+E YQ D H VAL LRT+ WL +SWHP+GA C +G PR + +TFSQ LR Q+ L +V++ P ERV+ L A R PA + LYVEIM+ SNV+L D I CA+QVS +S VRP+ TGQ YELPP++T
Sbjct: 4 VQPVDFTTLMAACCELRSDWLPARLEQVYQRDRHTVALALRTINRRGWLDISWHPQGARLC-IGSPPPRTPD--TFTFSQQLRHQLGSLALVAIAQVAPWERVIDLQFARRPGEPALWHLYVEIMSKYSNVILTTQDN-----LIVTCAHQVSAQQSSVRPIQTGQPYELPPSLT 170
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: UPI001681183D (fibronectin-binding domain-containing protein n=1 Tax=Pseudanabaena sp. FACHB-1277 TaxID=1540896 RepID=UPI001681183D) HSP 1 Score: 145 bits (366), Expect = 2.590e-37 Identity = 83/187 (44.39%), Postives = 113/187 (60.43%), Query Frame = 1
Query: 7 LQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKS-VRPLSTGQAYELPPAMTARRRPRPEEPFE 564
+Q+VD TT + ++ EL Q+ VPAR+E +Q D H + LQLRTLE +WL +SWHP+ A R H+ P++ + +TFSQ + Q+ G +VSVGL ERVV L A R D P + LY+E+M SN +LV D I A+QVS +S VRP+ TG +ELPPA+ P +EPFE
Sbjct: 1 MQTVDLTTLIALTHELNQTCVPARLEQVHQSDRHTIHLQLRTLEQKLWLLLSWHPQSA-RLHLSAPPPKQPD--TFTFSQQILHQVAGYALVSVGLTSAWERVVDLRFAKRPDDPVEWHLYLEVMGKYSNAILVNADN-----EIVTAAHQVSSKQSRVRPIQTGDRFELPPALLEAM-PNLQEPFE 178
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: A0A651DR26_9CYAN (Rqc2 homolog RqcH n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A651DR26_9CYAN) HSP 1 Score: 143 bits (361), Expect = 1.040e-36 Identity = 80/174 (45.98%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 7 LQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKS-VRPLSTGQAYELPPAM 525
+Q VD TT + EL +PAR+E YQ D H V+L LRTLEG WL++ WHP+ A C +GG PR + +TFSQ L+ Q+ GL +++V L P ERVV A R P + LYVEIM SN +L D+ TI A+QVS +S VRP+ TGQ YE+PP M
Sbjct: 1 MQPVDLTTLTAVCAELRDGWLPARLEQVYQRDRHMVSLALRTLEGRSWLNICWHPQAAHLC-LGGPPPRTPD--TFTFSQQLKHQLGGLALIAVDLIHPWERVVDFQFAQRPGEPPLWHLYVEIMGKYSNAILTHADQ-----TIVTAAHQVSRQQSSVRPIQTGQPYEMPPRM 166
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: UPI001A0787B3 (NFACT family protein n=1 Tax=Pseudanabaenaceae cyanobacterium LEGE 13415 TaxID=2777976 RepID=UPI001A0787B3) HSP 1 Score: 135 bits (339), Expect = 2.100e-36 Identity = 79/173 (45.66%), Postives = 103/173 (59.54%), Query Frame = 1
Query: 7 LQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKS-VRPLSTGQAYELPPA 522
+Q VD+TT + + EL +PAR E AYQ D V L LRTL+ WL +SWHP+ A+R H+ PR+ + +TFSQ LR Q+ GL +V + P ER + L A R PA + LY+EIM SN +LV + A I A+QVS S+S VRP+ TGQ YELPPA
Sbjct: 1 MQPVDYTTLMAICAELRSQWLPARFEQAYQCDRFTVLLALRTLKKRGWLALSWHPQ-AARIHMSDPPPRDPD--TFTFSQQLRHQLGGLALVDIQPVSPWERAIDLQFAHRPGEPALWHLYIEIMGQYSNAILVNQENA-----IVTAAHQVSSSQSSVRPIQTGQPYELPPA 165
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: K9TWZ5_CHRTP (Rqc2 homolog RqcH n=5 Tax=Chroococcidiopsis TaxID=54298 RepID=K9TWZ5_CHRTP) HSP 1 Score: 141 bits (356), Expect = 5.230e-36 Identity = 84/186 (45.16%), Postives = 109/186 (58.60%), Query Frame = 1
Query: 7 LQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKS-VRPLSTGQAYELPPAMTARRRPRPEEPF 561
+Q VDFTT EL + +PAR+E YQ D + + L LRTL+ WL +SWHP+ A C +G PR+ + +TFSQ L Q+ GL ++S P ERVV L A R P + +YVEIM SNVVL + + I A+QVSP KS VRP+ TGQ+YELPPA+T P +EPF
Sbjct: 1 MQPVDFTTLTAACSELSKDWIPARLEQVYQRDRYTILLALRTLDRRGWLEISWHPQAAHIC-IGTPPPRQPD--TFTFSQQLLHQLNGLALISCRPVVPWERVVDLQFARRPGEPVLWHVYVEIMGKYSNVVLT-----NTANEITTAAHQVSPQKSSVRPIQTGQSYELPPALTGTA-PALDEPF 177
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Match: UPI0017476841 (NFACT family protein n=2 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017476841) HSP 1 Score: 140 bits (353), Expect = 1.410e-35 Identity = 82/175 (46.86%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 7 LQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWLHVSWHPKGASRCHVGGDVPREKEQKAYTFSQTLRSQIRGLNIVSVGLARPMERVVRLDLAPRLDAPATFRLYVEIMASRSNVVLVAVDEASGSETIAACAYQVSPSKS-VRPLSTGQAYELPPAMT 528
+Q VDFTT EL S +PAR+E YQ+D H +AL LRTL+ WL VSWHP+ A C +G PR + +TFSQ LR Q+ GL + ++ P ERVV L A R A + LY+EIM + SNV+L A+ I A+QVS +S VRP+ TGQ YELPPA+T
Sbjct: 1 MQPVDFTTLTAACAELRASWLPARLEQVYQIDRHTIALALRTLDHRGWLTVSWHPQAARLC-MGDAPPRTPD--TFTFSQQLRHQLGGLALTAIAPVAPWERVVDLQFARRPGDTALWHLYIEIMGNYSNVIL-----ANQENLIVTAAHQVSAQQSSVRPIQTGQTYELPPALT 167 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12982.2258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12982.2258.1 >prot_E-fasciculatus_F_contig12982.2258.1 ID=prot_E-fasciculatus_F_contig12982.2258.1|Name=mRNA_E-fasciculatus_F_contig12982.2258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=190bp ANLQSVDFTTALLMSRELEQSIVPARIENAYQMDAHNVALQLRTLEGNMWback to top mRNA from alignment at E-fasciculatus_F_contig12982:1921..3789+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12982.2258.1 ID=mRNA_E-fasciculatus_F_contig12982.2258.1|Name=mRNA_E-fasciculatus_F_contig12982.2258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1869bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12982:1921..3789+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12982:1921..3789+ >mRNA_E-fasciculatus_F_contig12982.2258.1 ID=mRNA_E-fasciculatus_F_contig12982.2258.1|Name=mRNA_E-fasciculatus_F_contig12982.2258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12982:1921..3789+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |