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Homology
BLAST of mRNA_E-fasciculatus_F_contig1298.2255.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI) HSP 1 Score: 259 bits (663), Expect = 5.510e-79 Identity = 143/169 (84.62%), Postives = 148/169 (87.57%), Query Frame = 1
Query: 223 MSQARRQILAKGLVANHATVLDFSPGDVNGPSPASSLIPKAADLFAGAPKGSSKRKXXXXXXXXXDGACSGKRKATEQGPAALAPTMVVCDAASFSSARASEEMQGIFTKYPLKGEASSVKVVGSAWLSECLRLGSAQPIGSHLLDTITPATAKKKFSKTNPTPAVSGA 729
MSQARRQILAKGLVANHATVLDFSPGDVNG SPASSLIPKAADLFAG PKGSSKRK DGA SGKRKATE GP AL PTMVVCDAASFSSARASEEM+GIF KYPLK EASSVKVVGSAWLSECLRLGSAQP+GSHLLDTITPATAKK ++K+ PT AV GA
Sbjct: 1 MSQARRQILAKGLVANHATVLDFSPGDVNGKSPASSLIPKAADLFAGTPKGSSKRKRASSGAG--DGASSGKRKATEHGPVALVPTMVVCDAASFSSARASEEMEGIFNKYPLKEEASSVKVVGSAWLSECLRLGSAQPMGSHLLDTITPATAKKFYNKS-PTAAVCGA 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 264.6 |
| Seed ortholog evalue | 4.7e-68 |
| Seed eggNOG ortholog | 2880.D7FLS6 |
| KEGG ko | ko:K08073 |
| EggNOG free text desc. | DNA-3'-diphospho-5'-guanosine diphosphatase |
| EggNOG OGs | COG0241@1,KOG2134@2759 |
| Ec32 ortholog description | P-loop containing nucleoside triphosphate hydrolase |
| Ec32 ortholog | Ec-03_005190.1 |
| EC | 2.7.1.78,3.1.3.32 |
| COG Functional cat. | E |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko01009,ko03400 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 774 |
| Cds size | 768 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927801.902194-UTR-E-fasciculatus_F_contig1298:13111..13117 | 1622927801.902194-UTR-E-fasciculatus_F_contig1298:13111..13117 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1298 13112..13117 + |
| 1695995700.8272033-UTR-E-fasciculatus_F_contig1298:13111..13117 | 1695995700.8272033-UTR-E-fasciculatus_F_contig1298:13111..13117 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1298 13112..13117 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1298.2255.1 >prot_E-fasciculatus_F_contig1298.2255.1 ID=prot_E-fasciculatus_F_contig1298.2255.1|Name=mRNA_E-fasciculatus_F_contig1298.2255.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp
MFSGEVAVICPVGGMFSGPSCRGGGPLRTALVSTAAITIASASAAASRST
SSAFAAQPATVYCRPTHRTRSWMSQARRQILAKGLVANHATVLDFSPGDV
NGPSPASSLIPKAADLFAGAPKGSSKRKRSSSGTGTGDGACSGKRKATEQ
GPAALAPTMVVCDAASFSSARASEEMQGIFTKYPLKGEASSVKVVGSAWL
SECLRLGSAQPIGSHLLDTITPATAKKKFSKTNPTPAVSGAAGAGAGAGA
GGSGGG back to topmRNA from alignment at E-fasciculatus_F_contig1298:13112..18485+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1298.2255.1 ID=mRNA_E-fasciculatus_F_contig1298.2255.1|Name=mRNA_E-fasciculatus_F_contig1298.2255.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1298:13112..18485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACCATGTTCTCCGGGGAGGTAGCAGTGATATGCCCAGTGGGTGAGTC
GCGGTTGATGTTGGGATGCGGGAAAGCCCACAGCATGTGCTAACATACCC
GCGCGCCGTGCCCGAAATTCAAATTTTGTTCTGTGTTTCATGAAGGAGGC
GGTGCATGCGTGTTGTGTGCTACAGGGCAGACCTACCTGCAGAGTACCTG
GTACCCCAGTGCTTCGCTCTGCACTCTGTGCCATGCGTCTGAGCATACCC
TTCCAGTTCCCTCGGCGAAACGCCTCTTTTACTGATGTCGCATAGAACGT
GAAATCCACCGCAACCCCCAGCACCACAAGTTGCAGACCTGATACCACAT
TTAGTCTACCATTGTAGGGCGGAGCCACCCTAAGCAACTACTGTGCTGTC
TCCTCGTCCCAGTCCAGCAGCTAAGACGAAACGCGGGCAATCTTCTCCAT
GGTTGCCAGTGGACAGCTGAATTGTCTCTGCCCCCGTGCTCGCTCTCGTT
AACAGAAACTATTGTACAACGAAGCAACGTCCCATACGGTCGAAAACACG
AAAAATCAGGTTTGGGAGTTTGGGAGTGTAGCGAACGAGCGGCACATTCC
GCCGCACATGGTCTCCTACTGCTGTACTGCTGTAGTCTACTGCTGTACGG
CTGCTGCTGTATCTGTAGTCTACTGTCTTCAAAACCAGGGACCACAACTT
GACCAATGTAGCGAAGAGAAACTGCCACGATACAGGTCACGCAGCGCTAG
CTGGGATCTCATCTCTACACGTACTGCCGCTCCAACGTCTAAAGCAGCAG
CTGCAGTGTAATCGTAAATCAGCAGGTAGCGCCCGCTCTGAGAACCTCTA
GTTTTTGCCGACGCTGGGTTCTTCCATGTAGTCTACAGCAGTAGGGCCTT
TGCATATGGTTAGTACCAAGCTGGTTTCCCTCCACTCGCTGTAAAGACGT
CAACCCATCCCCTTCGACTGTGGGTATATCTCGAACGGCACGAAAGTGCT
CCATGTGTTTGTTTGTGTTTTTTTTTTCCTGATACGGTGATGCGACGAAT
GGCCACTCATAGGATTTAGTGCAGTTGTTCTTAATCGAGATAGCTCGCAG
TTGGTGCTCAAGTTCTTAGATTTATAGGTTTTTGAGGCTCAAATCAATTT
CTTCCAGTAGCTGCAGAGATCGTAAGTGCTAGAGGGGGCTAATTGTATCT
CCTTCTCCTCCCTCTCCTCCAGCAACCGAGTGGAGAGGCCCTTGCTTCCC
ATCAGAAAATTCTTCACAAGCAACTTCTTGATCACACTGTGCGTGGAACA
GAATCATCTCTAGGCTGCACCGCGCACGTAAGCTTTCGTTCGGTGAAGAG
ATGGGCACGGTGCTTAACCCTGCGGAGGTCCATCGTGTTTCTCCTGTCGA
AACTCACTCTGTCTGTTGTTTCGAGGCCAAGATGACACCGAAAACGGCGG
CAAGTTCACAGCGAGCGGCCGATTGGAAGATGGTCCTTCTCCTTACAATA
GCTTCATTCTCCATTCTGACTTGCCAAGAGCGGGGCGCACCCACCTCTAT
CTCTGGGGCGAAAACTTCTGCCTACTGCAATAGTTGAGTTGAGGGGGGGA
GGCTCCACCTTCGCCGATGCAGCCAACAGAGTATCAAACGTCGTTCACAC
CTGTCTGCTAGGTCCAGTCTACCACAGTGGGCCTACAGCAGTACTACGCC
CCGCGATTACGAAACGCCGATTCCGGGAGGTAGCTTGGGTTCGTATTTCG
TCTGCAACGTCGAGAATAGACTATAGACTAGTTCTAGATAGCACCTAAGG
ATTTGCTGTGTAGGGACCATGGCTGAGTTGTCATATTAGTGTCCGGGGAA
GGTTGAGCCTTGTGTTTTTGAACGTTTTGCTCGTTCGCGGGCCTGTGCTG
CTGTGCGCAGTGTCCAACCTATGCTGAGTGCCAATCAAGGGACAAACCCT
ACCTCATACTTATATCAAGAGTCGATCAATCCTACGGCCAAAGCAAGCGA
TGCGAAAGAAGACATCAAGCGTGAAACACTGGGAACGGGAAGGGAGCAAC
TCCAGCCTAGAGCCGACCAAGCGATGCCGCAAACTTCATCGCGCAGGGGG
GATGTTTTCAGGGCCGAGTTGTAGGGGAGGCGGTCCTCTTAGGACTGCCT
TGGTGTCCACGGCGGCCATCACCATTGCCTCTGCTTCTGCTGCTGCTTCT
CGTTCGACTAGCTCTGCTTTCGCTGCCCAACCTGCGACTGTGTACTGCCG
GCCCACGCATAGGACACGCTCTTGTAAGAAGAAGTCCGACTCCCACCTGT
GCTGTGTTGGTGAAGACTCCCACCTATGTTGGTGAAAAGTGTGCAGAGAG
AGGTGGTTGACACCCAACTGGACGAGTATCGCGTAATGTGGCGAGTAGAT
AGCTGTCAGCGATGAAGACCGTACAACCAACCCTAGCCATTGTGGTACAA
GAGGTTTCTGCATTTCTTCTCGGGAGGCGTCTCTCGTGAGGAGGCCAGTT
TATGCCACACCTGCTATTCATGCTCCCCGTCTTCAGCGATAAACCATCTC
CCCGTCTTAAGCGAGAACCCAGCCGCTTCGAACGATTCCAGTTCACGCAG
CTAACATGGCCGAGAAAAGCGCCGGGCTGTAAGAGAGCCACGCTAGCTGG
ATGGTTTCCCGCCATGACTTTGGACCATTCGGTGTTTATTGGTGGACAAA
TATGACGGATTCCCGCGACAACTGGGTTGAACCAATTGCATCTGCAGTCG
GTAGAGATGTGGGAGATATGGTATCCGTACCTTGGTTGTGTTTTGGAATG
GAACATACTGTTGTCACCGGCTGCCTTGCTTGACCGTAGAGTAGATTAGA
GCCCCCTACACATCTGTAGGTCTGTAGGTCTGTAGGTATGTGTGCGGAAT
GGCCTAGCGACGCAGACGTGGCGGTAGGTAGGGCTGTAGCAACTTGTAGA
CGCAACATACGTGATATGTGAGTTACTGCTGTTGCATTAGCCTGGCGCGT
GGAGTGTTGGCGGTTTGCTCTGCATGATCAATGTCGCCGAACTCTTTTTT
CCAGCATGTGGCTAAACCTGTTGTATTCTTTGTACCTTCGCCTTTGTGTT
GATTTTCCTAGGCCTTTGTTGATTGTCTTTGGTTTCTCGTCGTGCATATT
TTCCCTTTTGGGGTACACAACATACTACATACATCGTTGGGTTGTGCCGC
TGTAGGCGTCCTCGTTCGTCACTTGGCCCGGTACGGTACGGTACGGTACG
GTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTGCG
GTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACGGTACT
GCACGGATGTTAGACGGTGCTGAGCAAGATCGTCGGAGTCATTTTTCACG
CGAAGACAGCGATGTTGCAGTAGCAAGAAGAAGAGAAGAACAGCACCACC
AACGACATGAGTGGAGTGCTATTGTACCGCGTGCCTCGCATTGTTATTGG
CACACGTCGGGACGTTATCGTTCCATTTCGCCTTCAGTACTTCAGTGCTG
GTCGCGTACGCATTGAGATCCCATTGCGAGAAGAATCTTCATCATACCAG
CACCAGAGCACCAGAGGATCAAAAGAACAAAGCTCTCGATGACAAGCTGG
AGTCTATCGGCGCCTCCAGGCTTAACCCCCTCCTCCCAAACCAAACCGCC
GTCATTTCCACTCGCGCGACCATGCCATTCCGTGTCTCTCCTCTTTGCTC
GCAAGGGATGAGCCAAGCGAGGCGGCAGATCCTTGCCAAAGGCCTCGTGG
CCAACCATGCCACCGTGCTTGACTTCTCCCCCGGGGATGTCAACGGACCA
TCCCCTGCATCTTCCCTGATTCCGAAAGCGGCGGATCTTTTCGCGGGCGC
CCCGAAGGGTTCTTCGAAGCGGAAGCGTTCGAGCTCGGGGACTGGTACTG
GTGATGGGGCTTGTTCTGGCAAGCGCAAGGTGAACATGTCGCTTGTATAT
ACAGTGGGGAGCGCGTTAACAACGCCGATTGACTAGCGCCGGTGGCCCTG
TATTGCGCCGGTGAGATTGTTGGACACAGCCTGAAACACTACGGAATCCT
GTTACATTGAATAGCTTGAATAGCTTGAACATCGACGGTCCCCCCTGAAA
CGCGCTGGTCGATGCGCCGGGCATATACCGGCGGTATTGAGCCAGACACC
TCATTGCTTTTGTGAATGTCGCACACCTTCCCGTCGCCAGGGTTCTGTTG
GTTTTCTTTGTAGTAATCTTTGCACCACGCTCTTGGCAACAGCCAGCGAT
GAAAATTCCTTTTCCTTTTGAGGGTTCCTCATAACGTCTCCGCGTTTATT
CCACATGCGTGCACCCGATGAACATGGGCAGGCCACGGAGCAAGGGCCAG
CGGCTCTTGCTCCGACTATGGTGGTGTGCGATGCGGCCTCTTTCTCGTCT
GCAAGGGCTAGCGAGGAGATGCAGGGGATATTCACCAAGTATCCCCTGAA
AGGAGAGGCCTCCTCAGTGAAGGTGGGGAACGTGTCTGGAGATGCTATTT
GTTTGGGACAGTAATAATGGTCAGATTTTCGTTGAAAATGGGGGCTGATG
GGGGTGGGGGGGGGCATGGAGAGAGGTTGGGGATTTTGTTTGTTCGTCAG
GCGAGGGCTCCAGCTTGTGTCCTAAGAGTGCCGCAGTCCCTTGAATGGCT
GACTCATGAGGTTAGCATTTGGGAGGTGAGAGAGTTTGGGGGTCGGATGC
TGGATAGCGATATTTTGGATGATGGAGCCATGCCCTTGTGGTCGCTGCTG
CGTCAGCTCTGAGATGAAGTGTCCCCCCACATCTCTTTCGTTTCAGAGTC
CCCACGACGTCCACGGTGCGCACGAGTGAAGTTGTTTGGCTTACCTTGTC
TGGTACCATCTGCAATAGCCCCCCCACGTGCAACGCCCCACCTTCCGCAA
CCTTGACAAATTCCCCGCTTTCGATCAAGCCCGAAAGGAAAAAAGAGGTA
CTTGCTTGTACTGTCCTCGCCGCGAGCTCGTTCCATATCGTCAAGCCGCA
CATCGTCTACCGTAGTGATCGTGGCTGTAACCTAGCCTGACAGAACCGAA
CAGAATGTGGCGGGGGTTCTCGTCATCCCGCGGACCACACCGTCCCGTCC
ATCATTACGGTACCGGATTTACCGTGAAACGGCAGGTGGTGGGCTCGGCT
TGGTTGTCCGAGTGCCTCCGGCTAGGCTCCGCCCAACCAATTGGATCGCA
CCTGCTGGATACCATCACGCCCGCCACGGCGAAGAAGAAGTTCTCCAAGA
CGAATCCTACACCTGCCGTTTCCGGTGCAGCCGGTGCTGGTGCTGGTGCT
GGTGCTGGTGGTAGCGGTGGAGGT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1298:13112..18485+ >mRNA_E-fasciculatus_F_contig1298.2255.1 ID=mRNA_E-fasciculatus_F_contig1298.2255.1|Name=mRNA_E-fasciculatus_F_contig1298.2255.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1298:13112..18485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCTCCGGGGAGGTAGCAGTGATATGCCCAGTGGATGTTCTCCGGGG
AGGTAGCAGTGATATGCCCAGTGGGGGGGATGTTTTCAGGGCCGAGTTGT
AGGGGAGGCGGTCCTCTTAGGACTGCCTTGGTGTCCACGGCGGCCATCAC
CATTGCCTCTGCTTCTGCTGCTGCTTCTCGTTCGACTAGCTCTGCTTTCG
CTGCCCAACCTGCGACTGTGTACTGCCGGCCCACGCATAGGACACGCTCT
TGGGGGATGTTTTCAGGGCCGAGTTGTAGGGGAGGCGGTCCTCTTAGGAC
TGCCTTGGTGTCCACGGCGGCCATCACCATTGCCTCTGCTTCTGCTGCTG
CTTCTCGTTCGACTAGCTCTGCTTTCGCTGCCCAACCTGCGACTGTGTAC
TGCCGGCCCACGCATAGGACACGCTCTTGGATGAGCCAAGCGAGGCGGCA
GATCCTTGCCAAAGGCCTCGTGGCCAACCATGCCACCGTGCTTGACTTCT
CCCCCGGGGATGTCAACGGACCATCCCCTGCATCTTCCCTGATTCCGAAA
GCGGCGGATCTTTTCGCGGGCGCCCCGAAGGGTTCTTCGAAGCGGAAGCG
TTCGAGCTCGGGGACTGGTACTGGTGATGGGGCTTGTTCTGGCAAGCGCA
AGGGATGAGCCAAGCGAGGCGGCAGATCCTTGCCAAAGGCCTCGTGGCCA
ACCATGCCACCGTGCTTGACTTCTCCCCCGGGGATGTCAACGGACCATCC
CCTGCATCTTCCCTGATTCCGAAAGCGGCGGATCTTTTCGCGGGCGCCCC
GAAGGGTTCTTCGAAGCGGAAGCGTTCGAGCTCGGGGACTGGTACTGGTG
ATGGGGCTTGTTCTGGCAAGCGCAAGGCCACGGAGCAAGGGCCAGCGGCT
CTTGCTCCGACTATGGTGGTGTGCGATGCGGCCTCTTTCTCGTCTGCAAG
GGCTAGCGAGGAGATGCAGGGGATATTCACCAAGTATCCCCTGAAAGGAG
AGGCCTCCTCAGTGAAGGCCACGGAGCAAGGGCCAGCGGCTCTTGCTCCG
ACTATGGTGGTGTGCGATGCGGCCTCTTTCTCGTCTGCAAGGGCTAGCGA
GGAGATGCAGGGGATATTCACCAAGTATCCCCTGAAAGGAGAGGCCTCCT
CAGTGAAGGTGGTGGGCTCGGCTTGGTTGTCCGAGTGCCTCCGGCTAGGC
TCCGCCCAACCAATTGGATCGCACCTGCTGGATACCATCACGCCCGCCAC
GGCGAAGAAGAAGTTCTCCAAGACGAATCCTACACCTGCCGTTTCCGGTG
CAGCCGGTGCTGGTGCTGGTGCTGGTGCTGGTGGTAGCGGTGGAGGTGTG
GTGGGCTCGGCTTGGTTGTCCGAGTGCCTCCGGCTAGGCTCCGCCCAACC
AATTGGATCGCACCTGCTGGATACCATCACGCCCGCCACGGCGAAGAAGA
AGTTCTCCAAGACGAATCCTACACCTGCCGTTTCCGGTGCAGCCGGTGCT
GGTGCTGGTGCTGGTGCTGGTGGTAGCGGTGGAGGT back to top
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