mRNA_E-fasciculatus_F_contig1297.2249.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1297.2249.1
Unique Name	mRNA_E-fasciculatus_F_contig1297.2249.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: D8LRU5_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU5_ECTSI)

HSP 1 Score: 611 bits (1576), Expect = 1.100e-208
Identity = 458/579 (79.10%), Postives = 460/579 (79.45%), Query Frame = 2

Query:   41 MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQXXXXXXXXXXXXXTAPVQFAQPSQPTGPXXXXXXXXXXXXTFVSHQQXPYQQQSHQPXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPRAPTSATSGPQRXXXXXXNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRQPPRSQQHQHPSQPTGAPRGRRNGTPRSRQPFNGGGAGRGAAGGTSVASAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGELSVEASNSTASSGVAGGATDGVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNRXXXXXXXXXXXXXXTRXXXXXXXXXXXXXXXTANGGRXXXXXXXXXXXXXXXXXXXXXXXXGGRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQGQQSTPAPTSAPQAQAV 1777
            MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEA+E SQ             TAPVQFAQP QPTG XXXXXXXX     FVS                                                        P     AT+GPQ       NGPPARQQATQAGQRQPAPSARP PVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQR PPRSQQHQHPSQPTGAPRGRRNGTPRSRQ  NGGGAGRGAAGGTS  SAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMG LSVEASNSTASSG AGGATD VKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNR    XXXXXXXX  TR   XXXXXXXXXXXX ANGGRXXXXXXXXXXXXXXXXX    XXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQGQQ TP PTSAPQAQAV
Sbjct:    1 MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQAAPPPPP------TAPVQFAQPPQPTGXXXXXXXXXLLSPAFVS---------------------------------------------LLMMRSCGQGNPDV-RRATNGPQ-------NGPPARQQATQAGQRQPAPSARPVPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLINGGGAGRGAAGGTSATSAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNRNKPGXXXXXXXXQGTRGGVXXXXXXXXXXXXXANGGRXXXXXXXXXXXXXXXXXGRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQGQQPTPGPTSAPQAQAV 520

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S0XMA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0XMA5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.100e-21
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 2

Query:   65 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRV------EGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEAS 307
            PL+G+RISLISKKNIRYEG LY+IN SDA++ALQ+V+SFGTEGR       + + +PP   +H ++ FRGQDI DLHVH+ +   A+
Sbjct:    5 PLIGNRISLISKKNIRYEGVLYSINESDATVALQDVKSFGTEGRELLDTTGQTNFVPPQDTVHTYLLFRGQDIKDLHVHEKQGTPAA 91

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S2JUH1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.860e-21
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 2

Query:   65 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVE-----GHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQXXXXXXXXXXXXXTAPVQFA 370
            PL+GSRISLISKK+IRYEGTLY+IN +DA++ALQNVRSFGTEGR +     G  IPP   +H ++ FRG DI DLHVH+ +A +A++             TAP + A
Sbjct:    5 PLLGSRISLISKKDIRYEGTLYSINETDATVALQNVRSFGTEGREKRDDAAGTFIPPQATVHPYLLFRGMDIKDLHVHE-KASDAAKKEDVPSDPAILSATAPPEVA 110

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S2DIJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIJ2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.290e-20
Identity = 157/455 (34.51%), Postives = 198/455 (43.52%), Query Frame = 2

Query:   65 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQXXXXXXXXXXXXXTAPVQFAQPSQPTGPXXXXXXXXXXXXTFVSHQQXPYQQQSHQPXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPRAPTSATSGPQRXXXXXXNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRQPPRSQQHQHPSQPTGAPRGRRNGTPRSRQPFNGGGAGRGAAGGTSVASAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGELSVEASNSTASSGVAGGATDGVKKYNKS-SFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARR-RGGRG 1423
            PL+GSRISLISKK+IRY G LY+INTS+A++ALQ+VRSFGTE R     +PP+  ++ F+ FRG DI DLH+HD++  +                  P Q   P+  TG             T +S                               XXXXXXXXXXXXXXXXXXXXXXXX      SA+ G                            +A  AP+        A   +      +  G++   + RR P   R               GAP+G         Q  N             V  A     GAM GTG +LL  + +G    + + A S   +++FDF S  + FDK+KE  K    L+   S+ TA         D  KKYN S SFFDE+SCD LDR   R    TR  E   N +TFG  GLQ  RR RG RG
Sbjct:    9 PLIGSRISLISKKDIRYVGFLYDINTSEATVALQDVRSFGTEHRPVPQFVPPADTIYPFIKFRGSDINDLHIHDSQPTDGE---GPLQQLMGGKPQPPQQEPAPALLTG--------LGGFPTAIS--------------PPGVLSTASLAPGPLLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSASFGSF--------------------------AATVAPITSQTLTHTAKAENGGAAQLEVGGRSGTDSIRRPPNKGR--------------GGAPQGSSGRNAPRMQSSN-----------PKVPGASGSRSGAMPGTGASLLTRKPKGLD-KEHRNALSAEMSEDFDFSSAAEDFDKKKEAEK----LAARGSSITAEG-------DSSKKYNPSASFFDELSCDALDRGGKRFDSQTRLDEQKKNSETFGAVGLQDNRRSRGARG 375

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: B7FYW7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYW7_PHATC)

HSP 1 Score: 101 bits (252), Expect = 4.670e-20
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 2

Query:   65 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGH----VIPPSQVLHDFVCFRGQDIMDLHVHDAEAE 298
            PL+G  ISLISKKNIRYEG LY+IN  +A++ALQNVRSFGTEGR         + PS  +H F+ FRGQDI DLHVH+A AE
Sbjct:    5 PLIGKNISLISKKNIRYEGVLYSINEQNATVALQNVRSFGTEGREATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAE 86

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S3L9Q7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9Q7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.060e-20
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 2

Query:   65 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEE 301
            PL+G +ISLISKKNIRY GTLY+IN  +A++ALQNV+SFGTEGR     + PS  +H F+ FRGQDI DLHVH+    E
Sbjct:    5 PLIGKQISLISKKNIRYLGTLYSINEQNATVALQNVKSFGTEGRPAPQEVAPSNDMHPFLLFRGQDITDLHVHEEGTTE 83

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S1G7E6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7E6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.600e-20
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 2

Query:   32 AADMAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQV-LHDFVCFRGQDIMDLHV 280
            AA MA+ G+GVP +GS+ISLIS   IRYEGTL+NIN  ++++ALQNVRSFGTEGR +G    P+Q  +++++ FRG DI DL V
Sbjct:   36 AAAMADAGAGVPYLGSKISLISNSEIRYEGTLFNINPQESTVALQNVRSFGTEGRRQGGPQIPAQADVYEYIIFRGADIKDLRV 119

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 101 bits (251), Expect = 1.170e-19
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 2

Query:   65 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRV---EGHV-IPPSQVLHDFVCFRGQDIMDLHVHDAEAEE 301
            PL+G RISL+SKKNIRYEG LY+IN  +A++ALQNV++FGTEGR    EG + + P+  +H ++ FRGQDI DLHVH+  AEE
Sbjct:    4 PLLGKRISLVSKKNIRYEGVLYSINEQNATVALQNVKTFGTEGRELAEEGCIFVAPADTVHPYLLFRGQDIKDLHVHEQPAEE 86

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A448ZKE7_9STRA (LSM14 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKE7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.710e-19
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 2

Query:   65 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGH----VIPPSQVLHDFVCFRGQDIMDLHVHDAEAE 298
            PL+G+RISLISKKNIRYEG LY+IN +D++LALQNVRS+GTEGR +       + P + +H ++ FRG DI DLHVH+ ++E
Sbjct:    5 PLLGNRISLISKKNIRYEGILYSINETDSTLALQNVRSYGTEGREKSDPSTAFVAPQEGVHVYLLFRGCDIKDLHVHEQQSE 86

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BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S2C1P4_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C1P4_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 2.160e-19
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 2

Query:   53 GSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEA 304
            G  VP +GSRI LISK  IRYEGTLY I+T+++++ALQNVRSFGTE R E + IPPS  + D++ FRG DI DLHV +   E A
Sbjct:   23 GQPVPYLGSRIVLISKSEIRYEGTLYTIDTTNSTVALQNVRSFGTENRKEDNPIPPSAEIFDYIIFRGTDIKDLHVCEQPTEPA 106

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRU5_ECTSI	1.100e-208	79.10	Novel Sm-like protein with long N-and C-terminal d...	[more]
A0A7S0XMA5_9STRA	1.100e-21	57.47	Hypothetical protein (Fragment) n=1 Tax=Skeletonem...	[more]
A0A7S2JUH1_9STRA	1.860e-21	54.21	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7S2DIJ2_9STRA	1.290e-20	34.51	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
B7FYW7_PHATC	4.670e-20	63.41	Predicted protein n=1 Tax=Phaeodactylum tricornutu...	[more]
A0A7S3L9Q7_9STRA	6.060e-20	62.03	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
A0A7S1G7E6_9STRA	6.600e-20	58.33	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A1Z5JPN3_FISSO	1.170e-19	60.24	Uncharacterized protein n=2 Tax=Fistulifera solari...	[more]
A0A448ZKE7_9STRA	1.710e-19	58.54	LSM14 domain-containing protein n=1 Tax=Pseudo-nit...	[more]
A0A7S2C1P4_9EUKA	2.160e-19	59.52	Hypothetical protein (Fragment) n=2 Tax=Haptolina ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1297	contig	E-fasciculatus_F_contig1297:359..6116 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	622.9
Seed ortholog evalue	1.6e-175
Seed eggNOG ortholog	2880.D8LRU5
Preferred name	LSM14A
KEGG ko	ko:K18749
GOs	GO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.	cytoplasmic mRNA processing body assembly
EggNOG OGs	KOG1073@1,KOG1073@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03019
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Novel Sm-like protein with long N- and C-terminal domains.
Ec32 ortholog	Ec-08_002480.1
Exons	9
Model size	2637
Cds size	1740
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927801.22416-UTR-E-fasciculatus_F_contig1297:358..1215	1622927801.22416-UTR-E-fasciculatus_F_contig1297:358..1215	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1297 359..1215 -
1695995700.4998937-UTR-E-fasciculatus_F_contig1297:358..1215	1695995700.4998937-UTR-E-fasciculatus_F_contig1297:358..1215	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1297 359..1215 -
1622927801.402733-UTR-E-fasciculatus_F_contig1297:6076..6116	1622927801.402733-UTR-E-fasciculatus_F_contig1297:6076..6116	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1297 6077..6116 -
1695995700.6148431-UTR-E-fasciculatus_F_contig1297:6076..6116	1695995700.6148431-UTR-E-fasciculatus_F_contig1297:6076..6116	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1297 6077..6116 -

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1297.2249.1	prot_E-fasciculatus_F_contig1297.2249.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1297 1216..6076 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1297:359..6116-
coding sequence from alignment at E-fasciculatus_F_contig1297:359..6116-

protein sequence of mRNA_E-fasciculatus_F_contig1297.2249.1

>prot_E-fasciculatus_F_contig1297.2249.1 ID=prot_E-fasciculatus_F_contig1297.2249.1|Name=mRNA_E-fasciculatus_F_contig1297.2249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=580bp
MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTE
GRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQAAPPPPPPPP
PPPTAPVQFAQPSQPTGPPPPGGPPPLLSPTFVSHQQQPYQQQSHQPPPQ
PQPQPRQQQPPPHQQQQPPPPQQHGRAPQVNNTQQQQKQQPRAPTSATSG
PQRATNGPQNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSS
PRVAQAAGQAAQQNQRRAPTGQRQPPRSQQHQHPSQPTGAPRGRRNGTPR
SRQPFNGGGAGRGAAGGTSVASAPARTPGAMVGTGEALLNIRARGGPATD
GKGAASVPTAQEFDFQSELQKFDKEKELAKEMGELSVEASNSTASSGVAG
GATDGVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTG
LQHARRRGGRGHNRNKPGGGGAGGGGQGTRGGVGAGGTGAGVGAGTANGG
RGGSGGGRGGAGRGSGGGGRGRGGGGGRGSARGGYAGGGRGGAGQARPKP
KGGRGRGGNAPQGQQSTPAPTSAPQAQAV*

mRNA from alignment at E-fasciculatus_F_contig1297:359..6116-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1297.2249.1 ID=mRNA_E-fasciculatus_F_contig1297.2249.1|Name=mRNA_E-fasciculatus_F_contig1297.2249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5758bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1297:359..6116- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTTCCGTCCTCTGTGTGGCACTCTTTCCACGCGGCGGACATGGCAGAAG
AAGGCTCTGGGGTGCCCCTCGTGGGCTCTCGCATAAGCCTCATCTCCAAG
AAGAACATTCGCTACGAGGGCACGTTGTACAACATCAACACCAGCGATGC
TTCTTTGGCGCTCCAAAATGGCAAGTGTGGAGGATAATGGTTAGTCGCAC
TCTAGCCCCTCCCTCCGTATTCGATGTGCAGCCGTAAAAGTGCCTCTGCG
GGACTGCGGTACACCGGCAACAGTTATTCCTTTCATTTTACCGAAAGGAG
AAGAGGGTAAAGGCGTCAAGAAGGGATATGGTTGTCCGTGCCCCACCATG
AGTTGTATTTCGTTGTTTACGAGATTGTACCAACTGACCTCGTGTGCACA
CTTTGGTGCACACACGAAATCAACATGGCACCAGAGGTGCCGGTTCGAAC
GTGCGATCGCCGCACCCAGCAGCCCAGCAGTGTCGCACCAACCGACTCGC
GACTTGCTCATCCCGATGAAGTCGGCCCCCGCATGATTGATACTCCGTGA
CACGCATAAGCAGTAGCCGCCTGGAGGCTACTTATGTTCATAGCTCATGA
CCCCCAAGGGGTACACATTGGGGGCGTTTTCCCCTCGCTGACTCTCGATC
TTTCCCAACCCACTGGTACCCCTCTGTACCCCTATGTGACCGTGAACTGT
GAACTCCCGCAGTGCGAAGCTTCGGGACCGAGGGGAGAGTAGAGGGTCAC
GTCATCCCTCCGAGTCAAGTCCTTCATGATTTCGTATGCTTCCGGGGACA
GGACATAATGGATCTCCACGTGCACGACGCAGAGGCCGAGGAGGTGTGTG
TTGTGTACACGGCGGAATTCGCGAGGCAGCCAGCATCAACAATGTACTTC
CGTTACCATAGTCTAAGTCTGTATGCCTCGTGTACATTGGATGCATACCA
GATCCCATGATGCCGCCCCGCAATCGTGCGGGGCAGCAGCACGGGGCGGG
GCCGGTGGGCGGGCGCCAACTAATTGGTTTTCTTGATTCTTGAGAAGGCT
GCGTTCCAGGTGGATCTTCAATTTAAATAGGTCAGTTCTGTTTAGTCACT
TCGTGTCTTGTCCCGATTTCGTGAAGAATTTTCGACTTCGTCTTTTCACA
GCAGTCTTTAAATGATCGACTTGGCGGCTCGACAATCTTTACCTTTGAAC
GCAGGCAAGCCAGGCGGCACCACCGCCGCCGCCGCCACCGCCGCCGCCGC
CCACTGCTCCAGTTCAATTCGCCCAACCATCTCAGCCGACTGGTCCTCCG
CCTCCAGGTGGCCCTCCACCCCTCCTCAGCCCTACCTTTGTATCGGTGAG
TGCCGGCTGTTGCCGATGTGGGTCCACGCAGATCGGCGCTGACTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGTGCTGCTGCTGCAGCTGGTTATTCC
GAGCCTCGCCTTATCGCGTCTCTTGGAAGAGAGGACGTTTGTACCATACG
TTCAAGCTGACGCCGAATGAACAGAGCGCTGTGCCAAAGTTGCTCGTGAT
TCGAAGTTGTGGGCAGGGGAATCCTGATGTGAAACGGTGAGTGGTTGCTT
GTCAACACATCAGTTCATTGCGTGAAGGCGCAGTTGCTGTTTGGGGGACG
TTTGTTATTAGCTTTAACGAATCGTTGCGTTTTCGCTGTCATTACTGCTG
TGCCTTCTCATCCCCAGCATCAGCAGCAGCCGTACCAGCAGCAGTCGCAC
CAGCCTCCGCCGCAGCCGCAGCCGCAGCCGCGACAACAACAGCCGCCGCC
GCACCAGCAGCAGCAGCCCCCACCACCACAACAGCACGGGCGAGCTCCAC
AAGTCAACAACACGCAGCAGCAACAAAAGCAGCAGCCGAGAGCACCCACG
AGCGCAACGTCTGGACCCCAAAGGTGATCTTCTCCTCACCCCGCCACTTC
GATTACTCCTGCGGCGACCATGAGAGACTGCAAACGTTGTCGATTTTTTG
CGTTTCACTACGTGACCGAAAGCGGTTAAGTAGTCTAGCATGTCACCGAG
ATTCGAGCTAGCATTTCTAATCACGCTCACGGATAGTGTTCTTAGCGGTG
GTCGCTCATACTGGTAGTACCGCCTTACCTTACACCGTGACATCTTAAGG
CTAGTTTGTGGCTACCGTGAGGAGAATTTATCCCTAAATCTTGACCTTGT
TTACGGGGTTCTCCTTGCCTTGACAGGGCTACGAATGGGCCTCAGAATGG
ACCTCCTGCTCGTCAGCAGGCTACGCAAGCTGGCCAGAGGCAGCCAGCCC
CTTCGGCAAGACCGGCGCCTGTAGCACGCGGAGCACAGCAGCGCAGGGCC
GCGCCAGCCTCGTCGTCGCCTCGTGTAGCTCAGGCGGCTGGGCAGGCTGC
TCAACAAAACCAACGCAGGGCCCCGACGGGACAAAGGCAGCCCCCTCGGT
CACAGCAACACCAGCACCCCTCGCAGGTGCTTGATTTTGCGTGATGTGTG
ATGTATGCATAGCTTCGGTCCTCCTCTAGCAGGAGCATATATTTCGTCGG
GACAAGGTTGGCCATACATGTGTTGCTGTCGTGCACTATTTATTGTGAAG
CGTTGCAGATTTCGAGGTTTTGATGCTCTTCTGCACTATCTGATCTTCCC
CAAGATGAACCGTTTGGGTGAGCTGCCTGTATTGACAGTTGCGAGCCTAT
TAGCAGAGGGCGGGCGGGGGTTGCCTCATGGTACCCCAAGCACGGTCAGA
ATAAAGAGCGACGCCTCACAAGTAGTAACTGTTGTACCCGTGTGCCGTTC
TTTCGCATTGATTTCCGTTGTACCTTCAAACCATGCCGTTTCGACCCCCA
CCACTGCTGTTTTTCTGGTTTGCAGCCAACGGGGGCACCGCGGGGCCGGA
GGAACGGCACACCTAGATCTCGTCAGCCATTTAACGGGGGCGGTGCGGGT
AGGGGAGCAGCTGGTGGCACTAGCGTGGCCTCAGCCCCTGCTCGGACGCC
TGGGGTAAGAGCTTGTACAATCATAATGAGTTGGTTGTGGTGATGGGCGG
CTGGTCCTTCTTGTGATGGATCCATATTTTCCTTGTCGCAGCTGACTTGC
TATGCAAGTGGCTATCTTTGTGGTTCGTTTCTGGTACGCGACAGTGTTGC
CAGTGCTCGGATTGCTGATCCGAAGCTAGGGCCTTACCACGCTGTTGCTT
GGCCTCGTGCAAGTGGTATTGGGATGCGTTGATTTATGGCGGGGACGCCG
TCCGGACATGTACGCATTGGATCTGCACATAGTTTCCTCACCTATTCAAC
AAGATGCATCATGTCGTTGTCTTGTTGCTGGTGGAGTGCTGGCAGCTTTT
TGTTGATCCGTGCCCTCTCGCGATGTTGGTTGACTCCCGTCTGTTGTTCC
GTTCAGGCGATGGTGGGCACTGGAGAAGCGCTGCTCAACATCCGAGCCAG
AGGTGGCCCGGCGACGGACGGGAAGGGGGCGGCAAGCGTTCCCACCGCGC
AGGAGTTTGACTTCCAAAGCGAGCTCCAAAAGTTCGACAAGGTAACTACT
ATGATACTGATGTGCCCATTTTTGACACGAGCAAAGGCCATAGTTCTCGG
AAGAAGCCGAGTTCCGTTCGTCGTTTGTACTGTAGTCTTTGTGCACAGTT
CGGTCCGGGGCGAATGGATATCCTGTTGGTCATGCGAGAGCGCACTCCAG
CTGACGAGATTTTTCACTTTCTAAGTGCCAAGGGAGGCATGTGTGGTTAC
TTGTGGCATCAAATCGTATCCAGGAAAGTTCGAAAACGGAAAGTCTGCAC
CACCTGCCCCGCTCACGTCTGCGGGGTAGAACGTGATTTTGTCATGTATG
GCCATGTGTTCCGTAGGACGAAAGCTTGAGGCGGAGCAGTACAAGCATGG
CATGCTATTCAGATTCGAGCCGTTGGCGTATCGCAGTCTGCGTTCGTGAA
CGCTGTTGCGAGGTTGTTTGGTAGTGCTTTCGTTTATCCGTACCTCTCCC
AACTTCTCATATTGCTGTGGCAGGAAAAAGAGCTGGCTAAGGAAATGGGG
GAATTGAGCGTGGAGGCGTCCAACTCCACAGCGTCATCGGGAGTTGCTGG
AGGGGCGACGGACGGCGTGAAAAAATACAACAAATCTTCGTTCTTCGATG
AGATTTCGTGCGACGTGTTGGACCGTGCCGCAGGTACGGGGGAAAAGTTG
ACCAAAATTGCTTCATTGTGTCACGGGACACACGACAAAGCTGGCAAGGT
TTAACGATGGAGGATAATCCAGCTGCACTACTCGTGTCGTATGCACATCT
AGAGTACGTTGAGGCGAAAGGAAGAGGTGTGGTCTTGGGACAGTAGTTAC
AGATGTGTATTGTGACGATGGGGTCCGAAGGATCTTACCGATCTATGGCA
CAAGCCTCCCGTCTTTCGTTTTTTTTGTCCGGTGTCTGATCAGGGCGCCA
GCCGCGTGTCACACGCGCGGCAGAGATGGACATGAACATGGACACGTTTG
GCACAACCGGCTTACAACACGCCCGACGCCGAGGTGGACGAGGTCACAAC
AGGAACAAGCCTGGAGGAGGTGGAGCCGGCGGTGGCGGCCAAGGCACCCG
CGGCGGAGTAGGAGCAGGGGGCACCGGGGCAGGAGTCGGGGCGGGTACCG
CTAACGGTGGACGGGGAGGCAGCGGCGGTGGTCGTGGAGGAGCCGGTCGG
GGTTCTGGAGGTGGTGGCCGTGGTAGAGGCGGAGGTGGTGGCCGTGGTAG
CGCAAGGGGTGGATATGCTGGCGGTGGAAGAGGCGGGGCGGGCCAGGCAC
GACCAAAGCCAAAGGGGGGGAGAGGACGAGGTGGCAACGCCCCGCAAGGT
CAGCAGTCCACGCCAGCGCCCACTTCGGCCCCTCAGGCCCAAGCGGTATA
GTGAGGTGGCCCCTCGGGCCCAAGCTCTGCCCCCCCCTCCCCTTCTCTCA
GCTTTTGCTGTTGTACGATTCGTTCATCGGGGAGGAGAGGCGAGAGCGAG
CGTCCACATGCGAAAGCGAAGGTGGAGGGTGTTGGGAGGATGCCACTACG
GCGGGAAACTTTTTCGTTAAAAGCAACTCCGCGCAGCTGCAAAAAAAGCG
CGGCCACGCAGTTTGTGGCAAAGCCCTATTCGTTGCGTAGAAGGAAGGCC
GTCTAGTGTCGTTGCTGTTTTTTAATTGTCACTGTCCGTATTCTAGAAGC
AGGTGGTGGCGGCTTTGGAGATTTTCTCCACCGTAGGATCTCAAGGATCG
GATGGCCTCAAACGTTAGTTTTAGAGTATGGTCGACTTGTGCCGTACAGA
ATGGAAGATGGGTCATGTAGAGCGTGTGCGTAGGGTGACAAAAACAAGCT
ATAGTAGCTCTACGTGAGATCAGAGCAGTAGGATGCTTAAGTGTTCACGG
TGCGAGTACAACGCGGTGTCGTGCCCATTTTGTGAAATGGACCTGTATTT
GGGTTCTTTTTCAGCTACCCAACACCTGGCTCTCCCGGAGTACCTGTAGC
TACGATTTTTCAAAGTTCTAGGTTATACGTGCCCGCAGTATGCTGTTGAG
GTTCCCAATCTGAACGCATATGGTTAGGTGCAACCTATGTAGTGTTGAGG
TCGACACCAAGACTCGCAGACTCGGTGCCCTCAGCTTCCTGTTGGTTTTG
CTGCGGCTGGAATCTGAGCGCCGCTCCACTGCTGTAGTGACTGAAAGAAA
GTTCAGGCTGCGCCATTCGATGGCACAGCAAATCAGGGCCTTACACCAGC
AACCGGCC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1297:359..6116-

>mRNA_E-fasciculatus_F_contig1297.2249.1 ID=mRNA_E-fasciculatus_F_contig1297.2249.1|Name=mRNA_E-fasciculatus_F_contig1297.2249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1297:359..6116- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGAAGAAGGCTCTGGGGTGCCCCTCGTGGGCTCTCGCATAAGCCT
CATCTCCAAGAAGAACATTCGCTACGAGGGCACGTTGTACAACATCAACA
CCAGCGATGCTTCTTTGGCGCTCCAAAATGATGGCAGAAGAAGGCTCTGG
GGTGCCCCTCGTGGGCTCTCGCATAAGCCTCATCTCCAAGAAGAACATTC
GCTACGAGGGCACGTTGTACAACATCAACACCAGCGATGCTTCTTTGGCG
CTCCAAAATGTGCGAAGCTTCGGGACCGAGGGGAGAGTAGAGGGTCACGT
CATCCCTCCGAGTCAAGTCCTTCATGATTTCGTATGCTTCCGGGGACAGG
ACATAATGGATCTCCACGTGCACGACGCAGAGGCCGAGGAGTGCGAAGCT
TCGGGACCGAGGGGAGAGTAGAGGGTCACGTCATCCCTCCGAGTCAAGTC
CTTCATGATTTCGTATGCTTCCGGGGACAGGACATAATGGATCTCCACGT
GCACGACGCAGAGGCCGAGGAGGCAAGCCAGGCGGCACCACCGCCGCCGC
CGCCACCGCCGCCGCCGCCCACTGCTCCAGTTCAATTCGCCCAACCATCT
CAGCCGACTGGTCCTCCGCCTCCAGGTGGCCCTCCACCCCTCCTCAGCCC
TACCTTTGTATCGGCAAGCCAGGCGGCACCACCGCCGCCGCCGCCACCGC
CGCCGCCGCCCACTGCTCCAGTTCAATTCGCCCAACCATCTCAGCCGACT
GGTCCTCCGCCTCCAGGTGGCCCTCCACCCCTCCTCAGCCCTACCTTTGT
ATCGCATCAGCAGCAGCCGTACCAGCAGCAGTCGCACCAGCCTCCGCCGC
AGCCGCAGCCGCAGCCGCGACAACAACAGCCGCCGCCGCACCAGCAGCAG
CAGCCCCCACCACCACAACAGCACGGGCGAGCTCCACAAGTCAACAACAC
GCAGCAGCAACAAAAGCAGCAGCCGAGAGCACCCACGAGCGCAACGTCTG
GACCCCAAAGCATCAGCAGCAGCCGTACCAGCAGCAGTCGCACCAGCCTC
CGCCGCAGCCGCAGCCGCAGCCGCGACAACAACAGCCGCCGCCGCACCAG
CAGCAGCAGCCCCCACCACCACAACAGCACGGGCGAGCTCCACAAGTCAA
CAACACGCAGCAGCAACAAAAGCAGCAGCCGAGAGCACCCACGAGCGCAA
CGTCTGGACCCCAAAGGGCTACGAATGGGCCTCAGAATGGACCTCCTGCT
CGTCAGCAGGCTACGCAAGCTGGCCAGAGGCAGCCAGCCCCTTCGGCAAG
ACCGGCGCCTGTAGCACGCGGAGCACAGCAGCGCAGGGCCGCGCCAGCCT
CGTCGTCGCCTCGTGTAGCTCAGGCGGCTGGGCAGGCTGCTCAACAAAAC
CAACGCAGGGCCCCGACGGGACAAAGGCAGCCCCCTCGGTCACAGCAACA
CCAGCACCCCTCGCAGGGCTACGAATGGGCCTCAGAATGGACCTCCTGCT
CGTCAGCAGGCTACGCAAGCTGGCCAGAGGCAGCCAGCCCCTTCGGCAAG
ACCGGCGCCTGTAGCACGCGGAGCACAGCAGCGCAGGGCCGCGCCAGCCT
CGTCGTCGCCTCGTGTAGCTCAGGCGGCTGGGCAGGCTGCTCAACAAAAC
CAACGCAGGGCCCCGACGGGACAAAGGCAGCCCCCTCGGTCACAGCAACA
CCAGCACCCCTCGCAGCCAACGGGGGCACCGCGGGGCCGGAGGAACGGCA
CACCTAGATCTCGTCAGCCATTTAACGGGGGCGGTGCGGGTAGGGGAGCA
GCTGGTGGCACTAGCGTGGCCTCAGCCCCTGCTCGGACGCCTGGGCCAAC
GGGGGCACCGCGGGGCCGGAGGAACGGCACACCTAGATCTCGTCAGCCAT
TTAACGGGGGCGGTGCGGGTAGGGGAGCAGCTGGTGGCACTAGCGTGGCC
TCAGCCCCTGCTCGGACGCCTGGGGCGATGGTGGGCACTGGAGAAGCGCT
GCTCAACATCCGAGCCAGAGGTGGCCCGGCGACGGACGGGAAGGGGGCGG
CAAGCGTTCCCACCGCGCAGGAGTTTGACTTCCAAAGCGAGCTCCAAAAG
TTCGACAAGGCGATGGTGGGCACTGGAGAAGCGCTGCTCAACATCCGAGC
CAGAGGTGGCCCGGCGACGGACGGGAAGGGGGCGGCAAGCGTTCCCACCG
CGCAGGAGTTTGACTTCCAAAGCGAGCTCCAAAAGTTCGACAAGGAAAAA
GAGCTGGCTAAGGAAATGGGGGAATTGAGCGTGGAGGCGTCCAACTCCAC
AGCGTCATCGGGAGTTGCTGGAGGGGCGACGGACGGCGTGAAAAAATACA
ACAAATCTTCGTTCTTCGATGAGATTTCGTGCGACGTGTTGGACCGTGCC
GCAGGAAAAAGAGCTGGCTAAGGAAATGGGGGAATTGAGCGTGGAGGCGT
CCAACTCCACAGCGTCATCGGGAGTTGCTGGAGGGGCGACGGACGGCGTG
AAAAAATACAACAAATCTTCGTTCTTCGATGAGATTTCGTGCGACGTGTT
GGACCGTGCCGCAGGGCGCCAGCCGCGTGTCACACGCGCGGCAGAGATGG
ACATGAACATGGACACGTTTGGCACAACCGGCTTACAACACGCCCGACGC
CGAGGTGGACGAGGTCACAACAGGAACAAGCCTGGAGGAGGTGGAGCCGG
CGGTGGCGGCCAAGGCACCCGCGGCGGAGTAGGAGCAGGGGGCACCGGGG
CAGGAGTCGGGGCGGGTACCGCTAACGGTGGACGGGGAGGCAGCGGCGGT
GGTCGTGGAGGAGCCGGTCGGGGTTCTGGAGGTGGTGGCCGTGGTAGAGG
CGGAGGTGGTGGCCGTGGTAGCGCAAGGGGTGGATATGCTGGCGGTGGAA
GAGGCGGGGCGGGCCAGGCACGACCAAAGCCAAAGGGGGGGAGAGGACGA
GGTGGCAACGCCCCGCAAGGTCAGCAGTCCACGCCAGCGCCCACTTCGGC
CCCTCAGGCCCAAGCGGTATAGGGCGCCAGCCGCGTGTCACACGCGCGGC
AGAGATGGACATGAACATGGACACGTTTGGCACAACCGGCTTACAACACG
CCCGACGCCGAGGTGGACGAGGTCACAACAGGAACAAGCCTGGAGGAGGT
GGAGCCGGCGGTGGCGGCCAAGGCACCCGCGGCGGAGTAGGAGCAGGGGG
CACCGGGGCAGGAGTCGGGGCGGGTACCGCTAACGGTGGACGGGGAGGCA
GCGGCGGTGGTCGTGGAGGAGCCGGTCGGGGTTCTGGAGGTGGTGGCCGT
GGTAGAGGCGGAGGTGGTGGCCGTGGTAGCGCAAGGGGTGGATATGCTGG
CGGTGGAAGAGGCGGGGCGGGCCAGGCACGACCAAAGCCAAAGGGGGGGA
GAGGACGAGGTGGCAACGCCCCGCAAGGTCAGCAGTCCACGCCAGCGCCC
ACTTCGGCCCCTCAGGCCCAAGCGGTATAG