prot_E-fasciculatus_F_contig1297.2249.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1297.2249.1
Unique Nameprot_E-fasciculatus_F_contig1297.2249.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length580
Homology
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: D8LRU5_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU5_ECTSI)

HSP 1 Score: 611 bits (1576), Expect = 4.060e-213
Identity = 458/579 (79.10%), Postives = 460/579 (79.45%), Query Frame = 0
Query:    1 MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQXXXXXXXXXXXXXTAPVQFAQPSQPTGPXXXXXXXXXXXXTFVSHQQXPYQQQSHQPXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPRAPTSATSGPQRXXXXXXNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRQPPRSQQHQHPSQPTGAPRGRRNGTPRSRQPFNGGGAGRGAAGGTSVASAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGELSVEASNSTASSGVAGGATDGVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNRXXXXXXXXXXXXXXTRXXXXXXXXXXXXXXXTANGGRXXXXXXXXXXXXXXXXXXXXXXXXGGRGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQGQQSTPAPTSAPQAQAV 579
            MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEA+E SQ             TAPVQFAQP QPTG XXXXXXXX     FVS                                                        P     AT+GPQ       NGPPARQQATQAGQRQPAPSARP PVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQR PPRSQQHQHPSQPTGAPRGRRNGTPRSRQ  NGGGAGRGAAGGTS  SAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMG LSVEASNSTASSG AGGATD VKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNR    XXXXXXXX  TR   XXXXXXXXXXXX ANGGRXXXXXXXXXXXXXXXXX    XXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQGQQ TP PTSAPQAQAV
Sbjct:    1 MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQAAPPPPP------TAPVQFAQPPQPTGXXXXXXXXXLLSPAFVS---------------------------------------------LLMMRSCGQGNPDV-RRATNGPQ-------NGPPARQQATQAGQRQPAPSARPVPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLINGGGAGRGAAGGTSATSAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNRNKPGXXXXXXXXQGTRGGVXXXXXXXXXXXXXANGGRXXXXXXXXXXXXXXXXXGRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPQGQQPTPGPTSAPQAQAV 520          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S0XMA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0XMA5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.060e-22
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRV------EGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEAS 89
            PL+G+RISLISKKNIRYEG LY+IN SDA++ALQ+V+SFGTEGR       + + +PP   +H ++ FRGQDI DLHVH+ +   A+
Sbjct:    5 PLIGNRISLISKKNIRYEGVLYSINESDATVALQDVKSFGTEGRELLDTTGQTNFVPPQDTVHTYLLFRGQDIKDLHVHEKQGTPAA 91          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S2JUH1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.850e-22
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVE-----GHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQXXXXXXXXXXXXXTAPVQFA 110
            PL+GSRISLISKK+IRYEGTLY+IN +DA++ALQNVRSFGTEGR +     G  IPP   +H ++ FRG DI DLHVH+ +A +A++             TAP + A
Sbjct:    5 PLLGSRISLISKKDIRYEGTLYSINETDATVALQNVRSFGTEGREKRDDAAGTFIPPQATVHPYLLFRGMDIKDLHVHE-KASDAAKKEDVPSDPAILSATAPPEVA 110          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S2DIJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIJ2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.170e-21
Identity = 157/455 (34.51%), Postives = 198/455 (43.52%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQXXXXXXXXXXXXXTAPVQFAQPSQPTGPXXXXXXXXXXXXTFVSHQQXPYQQQSHQPXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPRAPTSATSGPQRXXXXXXNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRQPPRSQQHQHPSQPTGAPRGRRNGTPRSRQPFNGGGAGRGAAGGTSVASAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGELSVEASNSTASSGVAGGATDGVKKYNKS-SFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARR-RGGRG 461
            PL+GSRISLISKK+IRY G LY+INTS+A++ALQ+VRSFGTE R     +PP+  ++ F+ FRG DI DLH+HD++  +                  P Q   P+  TG             T +S                               XXXXXXXXXXXXXXXXXXXXXXXX      SA+ G                            +A  AP+        A   +      +  G++   + RR P   R               GAP+G         Q  N             V  A     GAM GTG +LL  + +G    + + A S   +++FDF S  + FDK+KE  K    L+   S+ TA         D  KKYN S SFFDE+SCD LDR   R    TR  E   N +TFG  GLQ  RR RG RG
Sbjct:    9 PLIGSRISLISKKDIRYVGFLYDINTSEATVALQDVRSFGTEHRPVPQFVPPADTIYPFIKFRGSDINDLHIHDSQPTDGE---GPLQQLMGGKPQPPQQEPAPALLTG--------LGGFPTAIS--------------PPGVLSTASLAPGPLLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSASFGSF--------------------------AATVAPITSQTLTHTAKAENGGAAQLEVGGRSGTDSIRRPPNKGR--------------GGAPQGSSGRNAPRMQSSN-----------PKVPGASGSRSGAMPGTGASLLTRKPKGLD-KEHRNALSAEMSEDFDFSSAAEDFDKKKEAEK----LAARGSSITAEG-------DSSKKYNPSASFFDELSCDALDRGGKRFDSQTRLDEQKKNSETFGAVGLQDNRRSRGARG 375          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: B7FYW7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYW7_PHATC)

HSP 1 Score: 101 bits (252), Expect = 2.480e-20
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGH----VIPPSQVLHDFVCFRGQDIMDLHVHDAEAE 86
            PL+G  ISLISKKNIRYEG LY+IN  +A++ALQNVRSFGTEGR         + PS  +H F+ FRGQDI DLHVH+A AE
Sbjct:    5 PLIGKNISLISKKNIRYEGVLYSINEQNATVALQNVRSFGTEGREATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAE 86          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S3L9Q7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9Q7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.130e-20
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEE 87
            PL+G +ISLISKKNIRY GTLY+IN  +A++ALQNV+SFGTEGR     + PS  +H F+ FRGQDI DLHVH+    E
Sbjct:    5 PLIGKQISLISKKNIRYLGTLYSINEQNATVALQNVKSFGTEGRPAPQEVAPSNDMHPFLLFRGQDITDLHVHEEGTTE 83          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 101 bits (251), Expect = 6.060e-20
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRV---EGHV-IPPSQVLHDFVCFRGQDIMDLHVHDAEAEE 87
            PL+G RISL+SKKNIRYEG LY+IN  +A++ALQNV++FGTEGR    EG + + P+  +H ++ FRGQDI DLHVH+  AEE
Sbjct:    4 PLLGKRISLVSKKNIRYEGVLYSINEQNATVALQNVKTFGTEGRELAEEGCIFVAPADTVHPYLLFRGQDIKDLHVHEQPAEE 86          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A448ZKE7_9STRA (LSM14 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKE7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 9.750e-20
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGH----VIPPSQVLHDFVCFRGQDIMDLHVHDAEAE 86
            PL+G+RISLISKKNIRYEG LY+IN +D++LALQNVRS+GTEGR +       + P + +H ++ FRG DI DLHVH+ ++E
Sbjct:    5 PLLGNRISLISKKNIRYEGILYSINETDSTLALQNVRSYGTEGREKSDPSTAFVAPQEGVHVYLLFRGCDIKDLHVHEQQSE 86          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S2C1P4_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C1P4_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 1.100e-19
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 0
Query:    5 GSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEA 88
            G  VP +GSRI LISK  IRYEGTLY I+T+++++ALQNVRSFGTE R E + IPPS  + D++ FRG DI DLHV +   E A
Sbjct:   23 GQPVPYLGSRIVLISKSEIRYEGTLYTIDTTNSTVALQNVRSFGTENRKEDNPIPPSAEIFDYIIFRGTDIKDLHVCEQPTEPA 106          
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Match: A0A7S2EU73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EU73_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.240e-19
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    9 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVE----GHV--IPPSQVLHDFVCFRGQDIMDLHVHDA 83
            PL+GSRISLISKKNIRYEG LY+IN +DA++AL+NVRS+GTEGR +    GHV  +PP + +H ++ FRG DI DLHVH++
Sbjct:    5 PLLGSRISLISKKNIRYEGLLYSINEADATVALENVRSYGTEGREKLDPSGHVAFVPPQEGVHAYLLFRGCDIKDLHVHES 85          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1297.2249.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU5_ECTSI4.060e-21379.10Novel Sm-like protein with long N-and C-terminal d... [more]
A0A7S0XMA5_9STRA6.060e-2257.47Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2JUH1_9STRA8.850e-2254.21Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2DIJ2_9STRA5.170e-2134.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B7FYW7_PHATC2.480e-2063.41Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3L9Q7_9STRA3.130e-2062.03Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5JPN3_FISSO6.060e-2060.24Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448ZKE7_9STRA9.750e-2058.54LSM14 domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A7S2C1P4_9EUKA1.100e-1959.52Hypothetical protein (Fragment) n=2 Tax=Haptolina ... [more]
A0A7S2EU73_9STRA1.240e-1962.96Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalSMARTSM01271LSM14_2coord: 5..111
e-value: 3.5E-39
score: 146.2
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 10..82
e-value: 2.5E-27
score: 94.8
IPR019050FDF domainSMARTSM01199FDF_2coord: 357..450
e-value: 8.9E-17
score: 71.7
NoneNo IPR availableGENE3D2.30.30.100coord: 2..86
e-value: 1.9E-29
score: 103.2
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 9..516
IPR025768TFG boxPROSITEPS51536TFGcoord: 430..450
score: 12.041
IPR025762DFDF domainPROSITEPS51512DFDFcoord: 351..387
score: 9.014
IPR025761FFD boxPROSITEPS51513FFDcoord: 407..422
score: 12.169
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 10..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1297contigE-fasciculatus_F_contig1297:1216..6076 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1297.2249.1mRNA_E-fasciculatus_F_contig1297.2249.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1297 359..6116 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1297.2249.1 ID=prot_E-fasciculatus_F_contig1297.2249.1|Name=mRNA_E-fasciculatus_F_contig1297.2249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=580bp
MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTE
GRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEAEEASQAAPPPPPPPP
PPPTAPVQFAQPSQPTGPPPPGGPPPLLSPTFVSHQQQPYQQQSHQPPPQ
PQPQPRQQQPPPHQQQQPPPPQQHGRAPQVNNTQQQQKQQPRAPTSATSG
PQRATNGPQNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSS
PRVAQAAGQAAQQNQRRAPTGQRQPPRSQQHQHPSQPTGAPRGRRNGTPR
SRQPFNGGGAGRGAAGGTSVASAPARTPGAMVGTGEALLNIRARGGPATD
GKGAASVPTAQEFDFQSELQKFDKEKELAKEMGELSVEASNSTASSGVAG
GATDGVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTG
LQHARRRGGRGHNRNKPGGGGAGGGGQGTRGGVGAGGTGAGVGAGTANGG
RGGSGGGRGGAGRGSGGGGRGRGGGGGRGSARGGYAGGGRGGAGQARPKP
KGGRGRGGNAPQGQQSTPAPTSAPQAQAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR025761FFD_box
IPR025762DFDF
IPR025768TFG_box
IPR019050FDF_dom
IPR025609Lsm14-like_N