mRNA_E-fasciculatus_F_contig12941.2230.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12941.2230.1 vs. uniprot
Match: D8LGZ8_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ8_ECTSI) HSP 1 Score: 316 bits (810), Expect = 1.080e-98 Identity = 216/233 (92.70%), Postives = 220/233 (94.42%), Query Frame = 3
Query: 288 GSGCRRLEGVGGSPACWAVVVNVQSEGEGKLLSVAAIVPDPSASLSAPGXXXXXXXXXXXXXXXXGEQMVDSGLLAEGLRRWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMVAVDASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDHPDGHHHRPSITAASRATLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 986
G+G RR EGVGGSPACWAVVVNVQ+EGEGKLLSVAAIVPDPSASLSAPG XXXXXXXXX EQMVDSGLLAEGLR+WEKTGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSM+A DASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDH DGHHHRPSITAASR TLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG
Sbjct: 421 GAGVRRPEGVGGSPACWAVVVNVQAEGEGKLLSVAAIVPDPSASLSAPGSAXXXXXXXXX------EQMVDSGLLAEGLRKWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMIAADASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDHTDGHHHRPSITAASRPTLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 647
BLAST of mRNA_E-fasciculatus_F_contig12941.2230.1 vs. uniprot
Match: A0A6H5KJG2_9PHAE (Tub domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG2_9PHAE) HSP 1 Score: 301 bits (771), Expect = 5.650e-92 Identity = 216/276 (78.26%), Postives = 223/276 (80.80%), Query Frame = 3
Query: 159 SPGDVGSDGSKAQSPALSGSSGXXXXXXXXXXXXXSRAGASREGSGCRRLEGVGGSPACWAVVVNVQSEGEGKLLSVAAIVPDPSASLSAPGXXXXXXXXXXXXXXXXGEQMVDSGLLAEGLRRWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMVAVDASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDHPDGHHHRPSITAASRATLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 986
SPGDVGSDGSKAQSPALSGSS XXXXXXXXXXXXX + G +VVNVQ+EGEGKLLSVAAIVPDPSASLSAPG XXXXXXXXXXXXXX EQMVDSGLLAEGLR+WEK GVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMVA DASPAXXXXXXXXXXXXXXXXXXX KDH +GHHHRPSITAAS++TLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG
Sbjct: 487 SPGDVGSDGSKAQSPALSGSSXXXXXXXXXXXXXXXQGG----------------------LVVNVQAEGEGKLLSVAAIVPDPSASLSAPGSAXXXXXXXXXXXXXX-EQMVDSGLLAEGLRKWEKAGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMVAADASPAXXXXXXXXXXXXXXXXXXXAGRGNRAGGGTNSEAQQTGGGDKDHAEGHHHRPSITAASKSTLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 739
BLAST of mRNA_E-fasciculatus_F_contig12941.2230.1 vs. uniprot
Match: A0A835YQA2_9STRA (Tub domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA2_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.380e-26 Identity = 73/216 (33.80%), Postives = 100/216 (46.30%), Query Frame = 3
Query: 339 AVVVNVQSEGEGKLLSVAAIVPDPSASLSAPGXXXXXXXXXXXXXXXXGEQMVDSGLLAEGLRRWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMVAVDASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDHPDGHHHRPSITAASRATLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 986
A+ VNV ++ +LLS+ A++PDP S D L L+ G PPG ++L+SK+P+WSAWQGCHTL F+RG +RVREPSRKN+S+V + A D + ++ LQ+GK+++D+FSLDF +PLSP QAFV AMS FDG
Sbjct: 358 AIAVNVVTDASSRLLSITAVIPDPQDEPSPAS--------------------TDEASLLAVLQLATAAGAPPPGFLLLQSKKPRWSAWQGCHTLCFERGAQRVREPSRKNISVVLAPGASASRGELAGKGAAAVASAW----------------------------DMDDQQSEALRSAPVVLQMGKLADDYFSLDFNYPLSPFQAFVLAMSAFDG 525
BLAST of mRNA_E-fasciculatus_F_contig12941.2230.1 vs. uniprot
Match: A0A7S3F1Y1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1Y1_9EUKA) HSP 1 Score: 53.1 bits (126), Expect = 3.260e-5 Identity = 41/143 (28.67%), Postives = 58/143 (40.56%), Query Frame = 3
Query: 558 GMIVLRSKQPKWSAWQGCHTLDFDRGGERVREPSRKNVSMVAVDASPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDHPDGHHHRPSITAASRAT-LQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFD 983
G++ LR+K P+W+ G TL++ RV + S KN+ +VA D + A SR Q+GK+SED FS+D+ PLSPLQAF A++IFD
Sbjct: 5 GLLSLRNKDPEWNEELGAFTLEYSG---RVTQASVKNIQLVARD---------------------------------------------------------VPAGSRDLHFQMGKVSEDRFSVDWRTPLSPLQAFGIALAIFD 87 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12941.2230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12941.2230.1 >prot_E-fasciculatus_F_contig12941.2230.1 ID=prot_E-fasciculatus_F_contig12941.2230.1|Name=mRNA_E-fasciculatus_F_contig12941.2230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp MVDSGLLAEGLRRWEKTGVVPPGMIVLRSKQPKWSAWQGCHTLDFDRGGEback to top mRNA from alignment at E-fasciculatus_F_contig12941:151..3790+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12941.2230.1 ID=mRNA_E-fasciculatus_F_contig12941.2230.1|Name=mRNA_E-fasciculatus_F_contig12941.2230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3640bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12941:151..3790+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12941:151..3790+ >mRNA_E-fasciculatus_F_contig12941.2230.1 ID=mRNA_E-fasciculatus_F_contig12941.2230.1|Name=mRNA_E-fasciculatus_F_contig12941.2230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12941:151..3790+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |