mRNA_E-fasciculatus_F_contig12935.2226.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12935.2226.1
Unique NamemRNA_E-fasciculatus_F_contig12935.2226.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12935.2226.1 vs. uniprot
Match: A0A6H5KZY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY8_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 6.780e-66
Identity = 184/410 (44.88%), Postives = 201/410 (49.02%), Query Frame = 1 
Query:    1 QEQAEVAKAIIGRSRDSPAFSGRQQQQRPEDAGXXQGS----AGQEARSWAXXXXXXXXXWLAARGGMLEAGTDGXXXXXXXXXXXMGPWSREASGKEAGALASEQGWFESVVPSLPWEV----------------------------------------------------------------------------------SFSAHGAGAVGGAEGYLASSTAPDTTXXXXXXXXXXGRSSPGPSRGTAASGVSLVGEDGQRLPPPP------------------------GTLGSPPGGRDGGADTGDGDGGVAVLTRVIAVEEPWQSIYLWSLLFVKTTADLRLFDSREVRLFEIIEGDAGEFDQH----DDDVGTEVDEEFYQESFFPGEGGDGESLSPPGSEPAG 888
            +EQAE+ KA+IGRSRD+P F G+Q         XX       AGQE R WA         WLAA GGMLE GT+            +G WSREAS KEA  LASEQ WFES VPSLPWE                                                                                    ++  GA AVG A GYL S T PDT    XX     GRSSPG SRGTA SGVSLVGEDG+RLP                           G  G  PG      +   G G V VLTRV AVEEPWQSIYLWSLLF KTTADLRLFDSREVRLFEIIE +AG++ +     DD VGTEVDEEFY+ESFFPGEGG+GES SPP SEP G
Sbjct:  843 EEQAELVKAMIGRSRDNPTFLGKQXXXXXXXXXXXXXXXXXXAGQETRPWAGGGVLR---WLAAHGGMLEGGTEVGDGDGGVVGDVVGSWSREASAKEAERLASEQFWFESRVPSLPWEGWAMRRVLWPLLSLVTAPPPSTTAPGTPGPAGSREQDRAAAVRALASSARRKVLRPAGLCPPWGDEDGGDEDPRARGPEDGNGGYAQRGAAAVGDAAGYLTS-TPPDTAAAAXXAP---GRSSPGASRGTAVSGVSLVGEDGRRLPXXXXXXXXXXXXXXXXXXXXXXXXAGVGGEGVFPG-----REKEGGGGEVEVLTRVAAVEEPWQSIYLWSLLFTKTTADLRLFDSREVRLFEIIEEEAGDYGERHGNGDDSVGTEVDEEFYEESFFPGEGGEGESPSPPKSEPEG 1240
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BLAST of mRNA_E-fasciculatus_F_contig12935.2226.1 vs. uniprot
Match: D8LIC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC0_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.820e-41
Identity = 111/210 (52.86%), Postives = 120/210 (57.14%), Query Frame = 1 
Query:  457 GRSSPGPSRGTAASGVSLVGEDGQRLPPPPGTLGSPPGGRDGGAD-TGDGDGGVA------------------VLTRVIAVEEPWQSIYLWSLLFVKTTADLRLFDSREVRLFEIIEGDAGEFDQH----DDDVGTEVDEEFYQESFFPGEGGDGESLSPPGSEPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTEDNNGDDSFV 1017
            GRS+   SRGT  SGVSLVGEDG+RLP                 + T  G  GV                   VLTRV AVEEPWQSIYLWS LFVKTTADLRLFDSREVRLFEIIEG+ G+ +Q     DDD+GTEVDEEFYQESFFPGEGGDG+S SPP SEPA                                V EDN+GDDSFV
Sbjct:  353 GRSNSRASRGTGVSGVSLVGEDGRRLPXXXXXXXXXXXXXXXXXEATASGRAGVXXXXXXXXXXXXXXXXXVEVLTRVAAVEEPWQSIYLWSQLFVKTTADLRLFDSREVRLFEIIEGETGDGNQRHGNGDDDMGTEVDEEFYQESFFPGEGGDGDSPSPPRSEPA-RGGSVFGGRRSSGGSGSDGGARSSPTAAVAGVPEDNHGDDSFV 561
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12935.2226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZY8_9PHAE6.780e-6644.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIC0_ECTSI1.820e-4152.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12935contigE-fasciculatus_F_contig12935:93..3784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 orthologEc-24_001590.2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001590.1
Exons3
Model size1020
Cds size1020
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12935.2226.1prot_E-fasciculatus_F_contig12935.2226.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12935 93..3784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927797.5395763-CDS-E-fasciculatus_F_contig12935:92..4651622927797.5395763-CDS-E-fasciculatus_F_contig12935:92..465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12935 93..465 +
1695995699.2427468-CDS-E-fasciculatus_F_contig12935:92..4651695995699.2427468-CDS-E-fasciculatus_F_contig12935:92..465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12935 93..465 +
1622927797.5517085-CDS-E-fasciculatus_F_contig12935:2560..29281622927797.5517085-CDS-E-fasciculatus_F_contig12935:2560..2928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12935 2561..2928 +
1695995699.2542503-CDS-E-fasciculatus_F_contig12935:2560..29281695995699.2542503-CDS-E-fasciculatus_F_contig12935:2560..2928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12935 2561..2928 +
1622927797.5615447-CDS-E-fasciculatus_F_contig12935:3505..37841622927797.5615447-CDS-E-fasciculatus_F_contig12935:3505..3784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12935 3506..3784 +
1695995699.2650008-CDS-E-fasciculatus_F_contig12935:3505..37841695995699.2650008-CDS-E-fasciculatus_F_contig12935:3505..3784Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12935 3506..3784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12935.2226.1

>prot_E-fasciculatus_F_contig12935.2226.1 ID=prot_E-fasciculatus_F_contig12935.2226.1|Name=mRNA_E-fasciculatus_F_contig12935.2226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=340bp
QEQAEVAKAIIGRSRDSPAFSGRQQQQRPEDAGGGQGSAGQEARSWAGSG
GGGVLRWLAARGGMLEAGTDGGGGGGGGGGGGMGPWSREASGKEAGALAS
EQGWFESVVPSLPWEVSFSAHGAGAVGGAEGYLASSTAPDTTAAAAAAAA
AAGRSSPGPSRGTAASGVSLVGEDGQRLPPPPGTLGSPPGGRDGGADTGD
GDGGVAVLTRVIAVEEPWQSIYLWSLLFVKTTADLRLFDSREVRLFEIIE
GDAGEFDQHDDDVGTEVDEEFYQESFFPGEGGDGESLSPPGSEPAGGGSV
FGGRRSSGGGGNDGGGARSSPTAVVAGVTEDNNGDDSFV*
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mRNA from alignment at E-fasciculatus_F_contig12935:93..3784+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12935.2226.1 ID=mRNA_E-fasciculatus_F_contig12935.2226.1|Name=mRNA_E-fasciculatus_F_contig12935.2226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12935:93..3784+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGCAAGCGGAAGTGGCCAAGGCAATCATCGGCCGCTCTAGAGACAG
CCCTGCCTTTTCGGGCAGACAACAGCAGCAGCGGCCAGAAGACGCGGGGG
GTGGACAAGGTTCGGCTGGCCAAGAAGCACGGTCCTGGGCCGGAAGCGGC
GGCGGCGGGGTCTTGCGATGGTTAGCGGCTCGCGGTGGCATGCTAGAGGC
TGGCACGGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTATGG
GGCCTTGGTCAAGGGAGGCGTCGGGAAAAGAGGCAGGAGCGCTAGCGTCG
GAGCAGGGTTGGTTCGAGTCCGTCGTGCCGTCCTTGCCATGGGAGGTGAG
TTTCTCCGCGCACGGCGCAGGCGGTTGGGAGGGAGGGAGGGAGGAAGGTA
GAACGATGGTGCCCGCAGTCCTTGGGGGGGGTGTTTGGAGTGCGAGGTGT
AAACAGGGAGCTGCCAGGCGGCAAGAAGGGAGTGGTGCCAGATGACAGAC
GGCGAATACTATTGGGAGTGTATCGGTGATGGCACTTCGCAGACCTACTA
GAAAGCGCACGTCGGGGGCGGGGGTTCTCGCGGCTGCTACAATGTATGCA
TAGCACGGTGCCTCTGACAACTGCATTTGCCGTTCTTAGTGCAGGGTACA
GAGACCCCCCCCCCTCCCTCGTGTAGTGTTTCAATCTCGATGAGTTCTCA
AGACACGACACGGCAAGGCTGGTCTAAGTCGTCCTTGTCGTATCGAATGT
GTCTTGTTGCTGCTTGAGAACCAATGTCGGTACCCCCCCAGTTCGAGGCC
CATCATTGGCACCCACGGCCTGTAGCCGTTTAGCTATCTTGTGCCCTTTA
CTCTCCTTCCAGGGCGCGCCTGTCGTGTGTGTGTGTTCGTAGTGTTATAA
ACGTTATTGTAATAGAGCCTCCCCTTTATGCCTGAGCAACCGAGGTCGTC
TATGGCGAGCAAGTCAAGAAGCCCCCTTCCCCCACGATCGCGCATATCCA
CCCCCCCTGCGTTCTGTGTTCCAACCAATGCTGAGCCTCCTCCGCGTGTG
TGTGTGTGTACGCTGGCATGCGAACAACTAAAAGGGGTGGGCTATGCGTC
GAGTCCTGTGGCCGTTGCTCTCTCTGCTCACGGCTCCGCCTCCGACGGCG
TCGGCGTCGGCACCGGGACCGGCAGGTGATGGGAGAATCGCCACCGACAA
TAATGCTCCTGCAACCTTGACATAATCATTGGGATACGGTTTGGGTGGAA
CTTGTGGTATCATGGGAGTCGCGGTGATGATGGGACGGAATGTGAGAGCT
GGGCGGCAGCGGTTGTGGTGATGATATGTAGTGAATGCGGTGATTGTTTC
GATGGATACTTGTGTATAGGGCAGGCGTCATTATGTGGACCGTGGTGGCA
GAGCATCGTCTCGCTGCAACTGCAGTGTTAATCGGCACAGCCATGAAAAC
ATAGCATGCATATAGGTCGCTGGTCAGCAGCAGACGCATGCGTCAACGGC
AACTGCCATTTTTCGTGCATACGGTTGCGTCCAAACATCTCACACAGCAG
TTGCTGTCTGTCCTATCGCTCTCTTTCTTTGCCCCTGGAAGAATATTTGT
CCTTTCCTCCCCTCCCCTCCGGCTCAAGAATTTCGCTGATACCCCCTCCC
CCCCGTCGTCCAGCAAACCACACGAACCCCCTGGTGGCTACAGCGGCGAG
AGAGACCCCCCCCCCGCCACCGCCTACCATCACTGAGAAATTTCTTTGTC
CCCTCTAACATTTTCTTTGGGACCTCCTTTTTTTCTTTTTCTTTTTTCAG
GCTCGCCGGAACAAGAGAGGTCGGCAGCGGTGCGCGCCCTGGCGTCCTCC
GCAAGGAAGAAAATCTTGAGGCCCGCGGGGCTGTGCCCCCCATGGGACGA
CGAAGACGGCCGCAACGAAGGTGAGAACGGTCGCGAGGGTGTGCCCTCAA
GATCATTGTTTTTTTCCCTCCCTCTGTTGTTCTGTTGTAGCTCCGACCGG
AACGAAGTTTGTAGCTCCGACCGGAACGAAGTTTGTAGGCGGGCGTGGGG
CCGTCCGCGCTTGATTTCGTTTTGGTTCTTCAAAGCTTTTGCCTGGGCTT
CCTTGTGTCTTTTGTTTCGCAACTCTACAACACATGCCATTTTTTTCAGT
TACATCTATCTGCTCTCGTGCCTGCTGTTCTTTTTCGTCGAGGTGGTTTC
CTTTACTAGCCATGCGTCGCCCGTGCGTGCGCTTGTCTCTATAGTGCCTA
CTGTACTAATAGTGAAGACGCCGCCAATACGAAAAGCAAGTAGTACCTCC
GCGTAGCAAAGACCTTCGGTTATCCTTGTGACGCGTAGCCTGGGCCGGCG
ATAAACAAACCCTGCATATCGCTCCGTCCCGGCATGGTAGGGATGCGAGG
TCAGCGACCTTCAGCTTACGTTTACCCCCCCCCCCTACCCCACACATCTT
GCGCCTACCTTTCGTCAGCGGTAGGTGGGGCCGAGGGGTACCTCGCCTCC
TCCACTGCGCCGGACACCACCGCAGCGGCGGCAGCAGCAGCAGCAGCAGC
AGGGAGGTCAAGCCCGGGACCCTCGCGAGGGACGGCGGCGTCGGGGGTAT
CCCTGGTCGGAGAAGACGGTCAGCGCCTGCCCCCCCCGCCCGGAACTCTC
GGATCTCCCCCCGGCGGCCGGGACGGAGGCGCAGACACAGGGGACGGGGA
CGGGGGGGTAGCGGTTCTGACGAGAGTGATCGCGGTAGAGGAACCGTGGC
AGTCGATCTACCTGTGGAGCCTGCTGTTCGTCAAGACCACGGCGGACCTG
AGGCTGTTTGATTCTCGTGAGGTCAGACTGTTCGAGGTGAGCCATTTTTT
TTTTGTTTTTGTGCTGCTTTTCGTCAGTGAAGTTCCGGAGACGGCAGCAG
TCATGAACTCTTGGAAATTGTGTACTCCGTATGCGTGTGTGTGCATGTTT
TTTTTTTTTTCAGGAAGACGTTTTTGCCCTTCCGTGTTTGCGATTCGCAG
CGGCCTGTGACTGTCTTGCTGCTGTGACTACTCAATCTACACGCTCTAGT
GAAAACGATGGGTGTTCGCGTACTTTCTGTGAATTTTAGTTTACTTGTCT
GGGCTGTGTTTTCGTTTTTTCTGATGTACCGTCTTGTCTGCATCCGTCAC
CTGAGGCAGACGTGAAATTGCCACGTGCTTTTCTTTTTTCATACAATATT
TCTTATGTTTGAGAGCGCCGTCCACTGAACGACGATTACTTGAAGGGTCT
ATACAACGTTACCGATTCGAGCAATTTCAACTGTCGTGTACAAGGACGAT
GAGCGCGCCGATGCCCTCCCTCCGTCCAGCCATCCGAACGCTCACCCCGC
CTTCGCCCACACATGCCCGCCCCCTACCACACGCTGTATTCTTGGGCGTA
ATGTGAGCGACAGATCATCGAAGGAGACGCAGGCGAGTTCGACCAGCACG
ACGACGACGTGGGCACCGAGGTCGACGAGGAGTTCTACCAAGAGTCGTTT
TTCCCCGGAGAAGGGGGCGACGGCGAATCACTATCCCCTCCCGGATCCGA
GCCCGCAGGGGGGGGCTCCGTGTTTGGGGGGAGGCGGTCGTCGGGTGGGG
GGGGTAACGACGGTGGTGGTGCTCGCAGCAGTCCGACCGCTGTTGTCGCG
GGTGTTACGGAAGATAACAACGGGGATGATTCCTTCGTCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12935:93..3784+

>mRNA_E-fasciculatus_F_contig12935.2226.1 ID=mRNA_E-fasciculatus_F_contig12935.2226.1|Name=mRNA_E-fasciculatus_F_contig12935.2226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12935:93..3784+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAGCAAGCGGAAGTGGCCAAGGCAATCATCGGCCGCTCTAGAGACAG
CCCTGCCTTTTCGGGCAGACAACAGCAGCAGCGGCCAGAAGACGCGGGGG
GTGGACAAGGTTCGGCTGGCCAAGAAGCACGGTCCTGGGCCGGAAGCGGC
GGCGGCGGGGTCTTGCGATGGTTAGCGGCTCGCGGTGGCATGCTAGAGGC
TGGCACGGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTATGG
GGCCTTGGTCAAGGGAGGCGTCGGGAAAAGAGGCAGGAGCGCTAGCGTCG
GAGCAGGGTTGGTTCGAGTCCGTCGTGCCGTCCTTGCCATGGGAGGTGAG
TTTCTCCGCGCACGGCGCAGGCGCAGGAGCAAGCGGAAGTGGCCAAGGCA
ATCATCGGCCGCTCTAGAGACAGCCCTGCCTTTTCGGGCAGACAACAGCA
GCAGCGGCCAGAAGACGCGGGGGGTGGACAAGGTTCGGCTGGCCAAGAAG
CACGGTCCTGGGCCGGAAGCGGCGGCGGCGGGGTCTTGCGATGGTTAGCG
GCTCGCGGTGGCATGCTAGAGGCTGGCACGGATGGTGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGGTATGGGGCCTTGGTCAAGGGAGGCGTCGGGAA
AAGAGGCAGGAGCGCTAGCGTCGGAGCAGGGTTGGTTCGAGTCCGTCGTG
CCGTCCTTGCCATGGGAGGTGAGTTTCTCCGCGCACGGCGCAGGCGCGGT
AGGTGGGGCCGAGGGGTACCTCGCCTCCTCCACTGCGCCGGACACCACCG
CAGCGGCGGCAGCAGCAGCAGCAGCAGCAGGGAGGTCAAGCCCGGGACCC
TCGCGAGGGACGGCGGCGTCGGGGGTATCCCTGGTCGGAGAAGACGGTCA
GCGCCTGCCCCCCCCGCCCGGAACTCTCGGATCTCCCCCCGGCGGCCGGG
ACGGAGGCGCAGACACAGGGGACGGGGACGGGGGGGTAGCGGTTCTGACG
AGAGTGATCGCGGTAGAGGAACCGTGGCAGTCGATCTACCTGTGGAGCCT
GCTGTTCGTCAAGACCACGGCGGACCTGAGGCTGTTTGATTCTCGTGAGG
TCAGACTGTTCGAGCGGTAGGTGGGGCCGAGGGGTACCTCGCCTCCTCCA
CTGCGCCGGACACCACCGCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGGG
AGGTCAAGCCCGGGACCCTCGCGAGGGACGGCGGCGTCGGGGGTATCCCT
GGTCGGAGAAGACGGTCAGCGCCTGCCCCCCCCGCCCGGAACTCTCGGAT
CTCCCCCCGGCGGCCGGGACGGAGGCGCAGACACAGGGGACGGGGACGGG
GGGGTAGCGGTTCTGACGAGAGTGATCGCGGTAGAGGAACCGTGGCAGTC
GATCTACCTGTGGAGCCTGCTGTTCGTCAAGACCACGGCGGACCTGAGGC
TGTTTGATTCTCGTGAGGTCAGACTGTTCGAGATCATCGAAGGAGACGCA
GGCGAGTTCGACCAGCACGACGACGACGTGGGCACCGAGGTCGACGAGGA
GTTCTACCAAGAGTCGTTTTTCCCCGGAGAAGGGGGCGACGGCGAATCAC
TATCCCCTCCCGGATCCGAGCCCGCAGGGGGGGGCTCCGTGTTTGGGGGG
AGGCGGTCGTCGGGTGGGGGGGGTAACGACGGTGGTGGTGCTCGCAGCAG
TCCGACCGCTGTTGTCGCGGGTGTTACGGAAGATAACAACGGGGATGATT
CCTTCGTCTAGATCATCGAAGGAGACGCAGGCGAGTTCGACCAGCACGAC
GACGACGTGGGCACCGAGGTCGACGAGGAGTTCTACCAAGAGTCGTTTTT
CCCCGGAGAAGGGGGCGACGGCGAATCACTATCCCCTCCCGGATCCGAGC
CCGCAGGGGGGGGCTCCGTGTTTGGGGGGAGGCGGTCGTCGGGTGGGGGG
GGTAACGACGGTGGTGGTGCTCGCAGCAGTCCGACCGCTGTTGTCGCGGG
TGTTACGGAAGATAACAACGGGGATGATTCCTTCGTCTAG
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