mRNA_E-fasciculatus_F_contig1293.2224.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1293.2224.1
Unique NamemRNA_E-fasciculatus_F_contig1293.2224.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1293.2224.1 vs. uniprot
Match: D8LUC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC0_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 4.100e-99
Identity = 173/192 (90.10%), Postives = 179/192 (93.23%), Query Frame = 1 
Query:    1 QEVPHLQDYAGVTRAPSLLPPSLACLSESSTLLETMLPPSXXXXXXXXXXXXXVMYVTDQNDQPILGQEHTPKKVLRYTFRLPVGSATGGGGGDGATKMMELALSYIQLLNKFKMSAGTRKKALERRAAVLKRKSVITHAQRQERFQVLKNERLQREREEYEGLTPEQKRRRDLRDEKKAKKIASSKRHKVR 576
            QEVPHLQDYAGVTRAPSLLPPSL CLSESS LLE MLP  XXXXXXXXX    +MYVTDQNDQPILGQEHTPKKVLRYTFRLPVGSA GG G DGAT+MMELALSYIQLLNKFKMSAGT+KKALERRAAVLKRKS ITHAQRQERFQ+LKNERLQREREEYEGLTPEQKRRRDLRDEKKAKK+ASSKRHK+R
Sbjct:  200 QEVPHLQDYAGVTRAPSLLPPSLVCLSESSALLEPMLPXXXXXXXXXXXNLLELMYVTDQNDQPILGQEHTPKKVLRYTFRLPVGSARGGDGSDGATEMMELALSYIQLLNKFKMSAGTKKKALERRAAVLKRKSAITHAQRQERFQMLKNERLQREREEYEGLTPEQKRRRDLRDEKKAKKVASSKRHKMR 391
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1293.2224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC0_ECTSI4.100e-9990.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1293contigE-fasciculatus_F_contig1293:17837..18911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.5
Seed ortholog evalue6.9e-80
Seed eggNOG ortholog2880.D8LUC0
Preferred nameCCDC47
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005791,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006983,GO:0006984,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009607,GO:0009791,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0012505,GO:0016043,GO:0019538,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0032501,GO:0032502,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0042592,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051603,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0065007,GO:0065008,GO:0071216,GO:0071704,GO:0071840,GO:0072507,GO:0098771,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG2357@1,KOG2357@2759
EC1.14.13.81
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size576
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927797.4549487-CDS-E-fasciculatus_F_contig1293:17836..180771622927797.4549487-CDS-E-fasciculatus_F_contig1293:17836..18077Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1293 17837..18077 -
1695995699.2014637-CDS-E-fasciculatus_F_contig1293:17836..180771695995699.2014637-CDS-E-fasciculatus_F_contig1293:17836..18077Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1293 17837..18077 -
1622927797.4690406-CDS-E-fasciculatus_F_contig1293:18576..189111622927797.4690406-CDS-E-fasciculatus_F_contig1293:18576..18911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1293 18577..18911 -
1695995699.2163668-CDS-E-fasciculatus_F_contig1293:18576..189111695995699.2163668-CDS-E-fasciculatus_F_contig1293:18576..18911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1293 18577..18911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1293.2224.1prot_E-fasciculatus_F_contig1293.2224.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1293 17837..18911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1293.2224.1

>prot_E-fasciculatus_F_contig1293.2224.1 ID=prot_E-fasciculatus_F_contig1293.2224.1|Name=mRNA_E-fasciculatus_F_contig1293.2224.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=192bp
QEVPHLQDYAGVTRAPSLLPPSLACLSESSTLLETMLPPSALKSLSENGS
LLEVMYVTDQNDQPILGQEHTPKKVLRYTFRLPVGSATGGGGGDGATKMM
ELALSYIQLLNKFKMSAGTRKKALERRAAVLKRKSVITHAQRQERFQVLK
NERLQREREEYEGLTPEQKRRRDLRDEKKAKKIASSKRHKVR
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mRNA from alignment at E-fasciculatus_F_contig1293:17837..18911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1293.2224.1 ID=mRNA_E-fasciculatus_F_contig1293.2224.1|Name=mRNA_E-fasciculatus_F_contig1293.2224.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1075bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1293:17837..18911- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAAGTGCCGCACCTGCAGGACTACGCGGGGGTCACCCGAGCGCCCTC
GCTTCTTCCCCCATCGCTCGCCTGCCTATCGGAGAGCTCCACCCTCCTGG
AAACGATGCTGCCGCCCTCGGCCCTCAAGAGTCTCAGCGAGAACGGAAGC
CTTCTCGAGGTCATGTACGTGACCGACCAGAACGACCAGCCGATCCTGGG
GCAAGAGCACACGCCCAAGAAGGTGCTGCGGTATACGTTCCGGTTGCCGG
TGGGGTCGGCGACGGGTGGCGGTGGCGGCGATGGGGCGACGAAGATGATG
GAGCTGGCGCTTTCCTACATCCAGCTCTTGAACAAGTGAGGCACTGCTGT
TGTCTTGTCTGTTTGCAACGCCACTTGTGGCTATTTTATCACGTGCTATG
GGACGGCGCTGGGGCATGCATTTATCCATGCCCGCCTGCTTGGCATGGTG
CGATGCTTCGTGTTGGTGCCGTTATACCCAAACATCTTCGCGGCGTCAAG
GTTAATGGAGTAGTATTGGAAAGTAGTATTGGAAATGTTGTTGATTTGAA
GTCTGGACCCCCAAGTTGGCGATGCAAGACCCCTGTTGCGGGTTTTAGTT
AGATATGCTACCCAAGGTACGTATAATCATAGTTTTTGTCGAATGAAGGG
CGGGGCGTCATGAGTAAGGTACACCAAATGACTGCGGCGATGCGACCAAT
GGTTGTATGTGCGTCTCTTATGACAACAGCAGTCAGTTTGACCACCTCAT
ACGGAGCGAGTGCGGGTGAAGCTCGAACACTCACACGTCGCCCCTGTGTT
CGTTGTGGTCTTTCGCTATCATGGGCAAATGAAGGTTTAAGATGTCCGCG
GGCACAAGAAAGAAGGCTTTGGAACGACGGGCAGCCGTGCTGAAGCGCAA
GTCTGTTATAACGCACGCCCAGAGGCAGGAGCGCTTCCAGGTGCTGAAGA
ACGAGCGGCTGCAGAGAGAACGGGAAGAGTACGAGGGCCTCACACCAGAG
CAGAAGCGGCGGCGAGACTTGAGGGACGAGAAAAAGGCCAAGAAAATTGC
CTCCAGCAAAAGGCACAAGGTACGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1293:17837..18911-

>mRNA_E-fasciculatus_F_contig1293.2224.1 ID=mRNA_E-fasciculatus_F_contig1293.2224.1|Name=mRNA_E-fasciculatus_F_contig1293.2224.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1293:17837..18911- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAAGTGCCGCACCTGCAGGACTACGCGGGGGTCACCCGAGCGCCCTC
GCTTCTTCCCCCATCGCTCGCCTGCCTATCGGAGAGCTCCACCCTCCTGG
AAACGATGCTGCCGCCCTCGGCCCTCAAGAGTCTCAGCGAGAACGGAAGC
CTTCTCGAGGTCATGTACGTGACCGACCAGAACGACCAGCCGATCCTGGG
GCAAGAGCACACGCCCAAGAAGGTGCTGCGGTATACGTTCCGGTTGCCGG
TGGGGTCGGCGACGGGTGGCGGTGGCGGCGATGGGGCGACGAAGATGATG
GAGCTGGCGCTTTCCTACATCCAGCTCTTGAACAACAGGAAGTGCCGCAC
CTGCAGGACTACGCGGGGGTCACCCGAGCGCCCTCGCTTCTTCCCCCATC
GCTCGCCTGCCTATCGGAGAGCTCCACCCTCCTGGAAACGATGCTGCCGC
CCTCGGCCCTCAAGAGTCTCAGCGAGAACGGAAGCCTTCTCGAGGTCATG
TACGTGACCGACCAGAACGACCAGCCGATCCTGGGGCAAGAGCACACGCC
CAAGAAGGTGCTGCGGTATACGTTCCGGTTGCCGGTGGGGTCGGCGACGG
GTGGCGGTGGCGGCGATGGGGCGACGAAGATGATGGAGCTGGCGCTTTCC
TACATCCAGCTCTTGAACAAGTTTAAGATGTCCGCGGGCACAAGAAAGAA
GGCTTTGGAACGACGGGCAGCCGTGCTGAAGCGCAAGTCTGTTATAACGC
ACGCCCAGAGGCAGGAGCGCTTCCAGGTGCTGAAGAACGAGCGGCTGCAG
AGAGAACGGGAAGAGTACGAGGGCCTCACACCAGAGCAGAAGCGGCGGCG
AGACTTGAGGGACGAGAAAAAGGCCAAGAAAATTGCCTCCAGCAAAAGGC
ACAAGGTACGTGTTTAAGATGTCCGCGGGCACAAGAAAGAAGGCTTTGGA
ACGACGGGCAGCCGTGCTGAAGCGCAAGTCTGTTATAACGCACGCCCAGA
GGCAGGAGCGCTTCCAGGTGCTGAAGAACGAGCGGCTGCAGAGAGAACGG
GAAGAGTACGAGGGCCTCACACCAGAGCAGAAGCGGCGGCGAGACTTGAG
GGACGAGAAAAAGGCCAAGAAAATTGCCTCCAGCAAAAGGCACAAGGTAC
GT
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