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Homology
BLAST of mRNA_E-fasciculatus_F_contig1293.2223.1 vs. uniprot
Match: D8LUC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC1_ECTSI) HSP 1 Score: 461 bits (1185), Expect = 6.940e-154 Identity = 280/356 (78.65%), Postives = 293/356 (82.30%), Query Frame = 2
Query: 80 MASQDQSGLGADIQQXXXXXXXXXXXXXXXXXXXXXQPSVSVSGELRSQEPPAAGPQPNHANGEAAAVTPDEVLALGVLALAGLWSGCWSGIAAVIVHEVEKLMQSGSVDASFRCCAQSLVDLLLQSPGESSLGADTWRQLSSTQARLPHKLGQVLGIACSLLQRKVVETADTRAKRKRRRYLSSSLAALKVPTPQLPPPCTTGLVAMVRDMAREEXXXXXXXXXXXQEEGAELSVNPPLLPPSQVLPLLLQQPLQPVPLPAQLQLSXXXXXXXXXXTPPPPHAVYACIPAAGGTEADFPVLLPHRASAVVPSP-PRPASLASNGNHHGPPSHPLQETSRPLEPEGSLAEQSVGAA 1144
MAS++QSGL AD+QQXXXXXXXXXXXXX XXXXXX +SVSGELRS EPPAAGP NHANGEAAA TPDEVLALGVLALAGLWSGCWSGIA VIVH+VEKL++SGSVD FR CAQSLVDLLLQSPGESSLG DTWRQLSSTQARLPHKLGQVLGIACSLLQRK VE ADTRAKRKRRR LSSS+AALKVPTP LPPPCTTGLV MV D+AREE Q GAE SVNPPL+PPSQV P LLQQPLQPVPLPAQLQLS TPPP H +YA PAAGGTEADFPVLLPHRA++ VPS PRP SL SNGNHHGPPS QE RPL EGSLAEQSVGAA
Sbjct: 1 MASEEQSGLDADMQQXXXXXXXXXXXXXTDXXXXXXX-XISVSGELRSHEPPAAGPPRNHANGEAAAATPDEVLALGVLALAGLWSGCWSGIATVIVHKVEKLIRSGSVDVPFRRCAQSLVDLLLQSPGESSLGEDTWRQLSSTQARLPHKLGQVLGIACSLLQRKAVEAADTRAKRKRRRCLSSSMAALKVPTP-LPPPCTTGLVTMVGDIAREEEEQEIENMRKTQAAGAERSVNPPLVPPSQVFPPLLQQPLQPVPLPAQLQLSAGTAAPQPERTPPPSHGLYAGAPAAGGTEADFPVLLPHRATSAVPSSFPRPESLGSNGNHHGPPSLSPQEAPRPLAQEGSLAEQSVGAA 354
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 2137 |
| Cds size | 1206 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1293.2223.1 >prot_E-fasciculatus_F_contig1293.2223.1 ID=prot_E-fasciculatus_F_contig1293.2223.1|Name=mRNA_E-fasciculatus_F_contig1293.2223.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=402bp
MASQDQSGLGADIQQQQQPHLEEPPPPPVDQRPQQQQPSVSVSGELRSQE
PPAAGPQPNHANGEAAAVTPDEVLALGVLALAGLWSGCWSGIAAVIVHEV
EKLMQSGSVDASFRCCAQSLVDLLLQSPGESSLGADTWRQLSSTQARLPH
KLGQVLGIACSLLQRKVVETADTRAKRKRRRYLSSSLAALKVPTPQLPPP
CTTGLVAMVRDMAREEEEQEVEKMRRRQEEGAELSVNPPLLPPSQVLPLL
LQQPLQPVPLPAQLQLSAAAAAPHRERTPPPPHAVYACIPAAGGTEADFP
VLLPHRASAVVPSPPRPASLASNGNHHGPPSHPLQETSRPLEPEGSLAEQ
SVGAASLGSNGNHHGCPSHLLQEASRPLEPEGSLAEQSVRLAASEPCPSV
P* back to topmRNA from alignment at E-fasciculatus_F_contig1293:14870..17450+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1293.2223.1 ID=mRNA_E-fasciculatus_F_contig1293.2223.1|Name=mRNA_E-fasciculatus_F_contig1293.2223.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1293:14870..17450+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCCCACTAAAGTACTGCGGTACCTTGGCGGTACTTCACTTTGAGCGGCG
TGCTGAGGGAGTGAGGGAGTGCTCCAACGATGGCGTCGGTGAGATACTTG
TATTTGAAGTGGGAAAACCAGGTCTACTATTCTGTTGTAGATCCCTGTGC
TGGACACGTTACTCTGAGTGTAGACAAACAATGGTGATGCTGCGTTTCTG
TTGCTGATCGCTAGCAAACTAGTGCACAAATATGCATACGATATCGAACG
TCGAACACGCACGTGGTTCGTTGGTCTACTAGAAAGAACGATCCTACTTT
GGTGTCGTCGCACGCTCTTTACTCTTTACCCACGTCATGACAAGGTTCGC
CCGCTCACGCGCCATGTAGAACGTAATTACTGCTTCCCTCTCCACAGTTG
CCACCCAGTCACAAGCTCCTATGGGTTCAAACTTTTCAAACAGTAGGTCA
GTATTTATTCTTACGATACCCTTTCTTTCATCTGTAAACAACTGCTGTTG
ATGGCGTTGCTGTGGTTCCGCATTTCGTGCAGCAAGATCAAAGTGGATTA
GGCGCCGATATACAGCAGCAACAACAACCGCACCTCGAGGAACCCCCACC
ACCGCCAGTCGACCAGCGCCCGCAGCAGCAGCAGCCTTCCGTTTCTGTGT
CGGGGGAGCTTCGCTCCCAGGAGCCGCCAGCAGCCGGGCCACAGCCGAAC
CATGCCAACGGTGAGGCAGCAGCTGTCACGCCGGACGAGGTACTCGCTCT
CGGCGTGCTAGCCCTTGCGGGGCTTTGGTCCGGATGCTGGAGCGGAATCG
CCGCTGTCATCGTGCACGAGGTGGAGAAGCTGATGCAGAGTGGTTCGGTC
GACGCCTCGTTCAGATGCTGTGCCCAGTCCCTCGTGGACCTGCTGTTGCA
AAGCCCGGGAGAGTCGAGCTTGGGCGCGGACACGTGGCGGCAGCTCTCGA
GCACGCAGGCTCGTCTACCGCACAAGCTCGGGCAAGTGCTCGGCATCGCG
TGCTCTCTGCTGCAGCGCAAGGTCGTCGAGACCGCGGACACGCGGGCGAA
GAGGAAACGCCGACGATATTTGAGTTCCTCCTTGGCGGCCCTGAAAGTGC
CGACCCCGCAGCTCCCGCCGCCGTGCACGACTGGCCTGGTCGCGATGGTG
AGGGACATGGCGCGCGAAGAGGAGGAGCAGGAAGTCGAGAAGATGAGAAG
AAGGCAGGAGGAAGGGGCGGAGCTCTCGGTGAATCCGCCGCTGCTCCCGC
CATCCCAAGTATTGCCGCTATTGTTGCAGCAGCCACTGCAGCCAGTGCCT
CTCCCGGCGCAACTACAGCTTTCGGCGGCAGCGGCAGCACCGCACCGCGA
ACGGACGCCGCCACCCCCGCACGCGGTCTACGCTTGCATCCCAGCCGCTG
GGGGGACGGAGGCAGATTTCCCTGTGCTTTTGCCTCACCGTGCTAGCGCC
GTGGTGCCGTCTCCTCCGAGACCAGCGAGTTTGGCTAGTAACGGCAACCA
TCACGGACCTCCATCGCACCCGCTGCAAGAGACATCGCGGCCGCTGGAAC
CGGAGGGGAGCTTGGCGGAACAGTCGGTTGGGGCAGCGAGTTTGGGAAGT
AACGGCAACCATCACGGGTGTCCATCGCACCTGTTGCAAGAGGCATCGCG
GCCGCTGGAACCGGAGGGGAGCTTGGCGGAGCAGTCGGTTCGGCTAGCGG
CCAGTGAGCCTTGCCCTTCCGTACCTTGAGTGCCGAAGCCTGGTAGACGA
ATGGCTGCCATGCCTACTCCTGTTCTCGGTCCGAGCGTGTAGTATGTAGA
CAAAATGTACAGGGAAACCGTACACGCTTTCACGGAGAGATTCAAGGTTA
TGCTTAAGAGCATGAAAAGCAGAGCATGAAGAGCGATGTGTAGCAGTTGC
ACTGGTGAGGAAGGCTGACGGGGGTAGTTGTGCAGGAGCTGGTGCATTGT
GAATTGTGATGGGTTGCGCTGCCTCCGACGGGTGTCTTCGTGAGATCATG
CGATCGTGCTTCCAGCGTTTAGATTCAATGAATGAAAGGCACCGCACCAG
GCACATGTTCCACCTACAAGCCAACGGGAAGAGTTTTCGTGAGACAAAAA
TGTGATCATGTTCGTTTCTTCTTAAAACTCTTTTCGGCACCCATCTGAGA
CGTGTCTTACATGTCACGTTGGGGTTGGGATTTGCACGCAGAAAAGCGGT
TCGCTTTCACAAAAGCACAAGGCACTTGCAAGGACAACCACCCCTTCTTG
CAAAAGCCATTTCTGAAAGGAATTATACCCGTATCAATGATGTTTGCACT
ACAGTCGTACGTAGCCCACGGCCCCAACACCCATCATGTGTGCAGCGTCG
TAGAAGGGTTGTCTTTGAGTGAGGGTTTGCGTGTAACTAGATGAACGCTG
CTTTCTGCGTAGGGCGCCTCCGCTTCCTAGAAGCTGTACCGGCGAGAGTG
GGGAGACGGCATGGAACTGTCTGTTGGCGTACCCGACGCAGCACTTGTTT
GTTTCAAGAAATGGAAAGAACGGATAGTAACAAAGGAGGCGTGAGACGAA
AAACGATGTGTAATCTAGTGCGCTATATGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1293:14870..17450+ >mRNA_E-fasciculatus_F_contig1293.2223.1 ID=mRNA_E-fasciculatus_F_contig1293.2223.1|Name=mRNA_E-fasciculatus_F_contig1293.2223.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2412bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1293:14870..17450+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTCGATGGCGTCGCAAGATCAAAGTGGATTAGGCGCCGATATACA
GCAGCAACAACAACCGCACCTCGAGGAACCCCCACCACCGCCAGTCGACC
AGCGCCCGCAGCAGCAGCAGCCTTCCGTTTCTGTGTCGGGGGAGCTTCGC
TCCCAGGAGCCGCCAGCAGCCGGGCCACAGCCGAACCATGCCAACGGTGA
GGCAGCAGCTGTCACGCCGGACGAGGTACTCGCTCTCGGCGTGCTAGCCC
TTGCGGGGCTTTGGTCCGGATGCTGGAGCGGAATCGCCGCTGTCATCGTG
CACGAGGTGGAGAAGCTGATGCAGAGTGGTTCGGTCGACGCCTCGTTCAG
ATGCTGTGCCCAGTCCCTCGTGGACCTGCTGTTGCAAAGCCCGGGAGAGT
CGAGCTTGGGCGCGGACACGTGGCGGCAGCTCTCGAGCACGCAGGCTCGT
CTACCGCACAAGCTCGGGCAAGTGCTCGGCATCGCGTGCTCTCTGCTGCA
GCGCAAGGTCGTCGAGACCGCGGACACGCGGGCGAAGAGGAAACGCCGAC
GATATTTGAGTTCCTCCTTGGCGGCCCTGAAAGTGCCGACCCCGCAGCTC
CCGCCGCCGTGCACGACTGGCCTGGTCGCGATGGTGAGGGACATGGCGCG
CGAAGAGGAGGAGCAGGAAGTCGAGAAGATGAGAAGAAGGCAGGAGGAAG
GGGCGGAGCTCTCGGTGAATCCGCCGCTGCTCCCGCCATCCCAAGTATTG
CCGCTATTGTTGCAGCAGCCACTGCAGCCAGTGCCTCTCCCGGCGCAACT
ACAGCTTTCGGCGGCAGCGGCAGCACCGCACCGCGAACGGACGCCGCCAC
CCCCGCACGCGGTCTACGCTTGCATCCCAGCCGCTGGGGGGACGGAGGCA
GATTTCCCTGTGCTTTTGCCTCACCGTGCTAGCGCCGTGGTGCCGTCTCC
TCCGAGACCAGCGAGTTTGGCTAGTAACGGCAACCATCACGGACCTCCAT
CGCACCCGCTGCAAGAGACATCGCGGCCGCTGGAACCGGAGGGGAGCTTG
GCGGAACAGTCGGTTGGGGCAGCGAGTTTGGGAAGTAACGGCAACCATCA
CGGGTGTCCATCGCACCTGTTGCAAGAGGCATCGCGGCCGCTGGAACCGG
AGGGGAGCTTGGCGGAGCAGTCGGTTCGGCTAGCGGCCAGTGAGCCTTGC
CCTTCCGTACCTTGACAAGATCAAAGTGGATTAGGCGCCGATATACAGCA
GCAACAACAACCGCACCTCGAGGAACCCCCACCACCGCCAGTCGACCAGC
GCCCGCAGCAGCAGCAGCCTTCCGTTTCTGTGTCGGGGGAGCTTCGCTCC
CAGGAGCCGCCAGCAGCCGGGCCACAGCCGAACCATGCCAACGGTGAGGC
AGCAGCTGTCACGCCGGACGAGGTACTCGCTCTCGGCGTGCTAGCCCTTG
CGGGGCTTTGGTCCGGATGCTGGAGCGGAATCGCCGCTGTCATCGTGCAC
GAGGTGGAGAAGCTGATGCAGAGTGGTTCGGTCGACGCCTCGTTCAGATG
CTGTGCCCAGTCCCTCGTGGACCTGCTGTTGCAAAGCCCGGGAGAGTCGA
GCTTGGGCGCGGACACGTGGCGGCAGCTCTCGAGCACGCAGGCTCGTCTA
CCGCACAAGCTCGGGCAAGTGCTCGGCATCGCGTGCTCTCTGCTGCAGCG
CAAGGTCGTCGAGACCGCGGACACGCGGGCGAAGAGGAAACGCCGACGAT
ATTTGAGTTCCTCCTTGGCGGCCCTGAAAGTGCCGACCCCGCAGCTCCCG
CCGCCGTGCACGACTGGCCTGGTCGCGATGGTGAGGGACATGGCGCGCGA
AGAGGAGGAGCAGGAAGTCGAGAAGATGAGAAGAAGGCAGGAGGAAGGGG
CGGAGCTCTCGGTGAATCCGCCGCTGCTCCCGCCATCCCAAGTATTGCCG
CTATTGTTGCAGCAGCCACTGCAGCCAGTGCCTCTCCCGGCGCAACTACA
GCTTTCGGCGGCAGCGGCAGCACCGCACCGCGAACGGACGCCGCCACCCC
CGCACGCGGTCTACGCTTGCATCCCAGCCGCTGGGGGGACGGAGGCAGAT
TTCCCTGTGCTTTTGCCTCACCGTGCTAGCGCCGTGGTGCCGTCTCCTCC
GAGACCAGCGAGTTTGGCTAGTAACGGCAACCATCACGGACCTCCATCGC
ACCCGCTGCAAGAGACATCGCGGCCGCTGGAACCGGAGGGGAGCTTGGCG
GAACAGTCGGTTGGGGCAGCGAGTTTGGGAAGTAACGGCAACCATCACGG
GTGTCCATCGCACCTGTTGCAAGAGGCATCGCGGCCGCTGGAACCGGAGG
GGAGCTTGGCGGAGCAGTCGGTTCGGCTAGCGGCCAGTGAGCCTTGCCCT
TCCGTACCTTGA back to top
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