mRNA_E-fasciculatus_F_contig1293.2222.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1293.2222.1 vs. uniprot
Match: D8LUC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC2_ECTSI) HSP 1 Score: 403 bits (1036), Expect = 7.250e-142 Identity = 207/213 (97.18%), Postives = 211/213 (99.06%), Query Frame = 1
Query: 1 MKFTAASVLVGLTTSQAFMVQPSMKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDDALYKTGDQAFMTKVKIDVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLSADKPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 639
MKFTAASVLVGLTTSQAFMVQP+MKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGAD ELGGGMSNYFAESDTYSPYSPYSKGDDALYK+ DQAFMTKVKID+LKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTL+ADKPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI
Sbjct: 1 MKFTAASVLVGLTTSQAFMVQPTMKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADPELGGGMSNYFAESDTYSPYSPYSKGDDALYKSSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLAADKPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 213
BLAST of mRNA_E-fasciculatus_F_contig1293.2222.1 vs. uniprot
Match: A0A6H5KN94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN94_9PHAE) HSP 1 Score: 282 bits (722), Expect = 6.470e-95 Identity = 147/151 (97.35%), Postives = 150/151 (99.34%), Query Frame = 1
Query: 1 MKFTAASVLVGLTTSQAFMVQPSMKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDDALYKTGDQAFMTKVKIDVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAK 453
MKFTAASVLVGLTTSQAFMVQP+MKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGD+ALYKT DQAFMTKVKID+LKDSQKRLQTVPGFIEGKKWEEIRSLLTAK
Sbjct: 1 MKFTAASVLVGLTTSQAFMVQPTMKTAGPDGGSSRADFAKLVTGTVAATAAVAAPALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDEALYKTSDQAFMTKVKIDILKDSQKRLQTVPGFIEGKKWEEIRSLLTAK 151
BLAST of mRNA_E-fasciculatus_F_contig1293.2222.1 vs. uniprot
Match: K8Z7P0_NANGC (Extrinsic protein in photosystem II n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7P0_NANGC) HSP 1 Score: 93.6 bits (231), Expect = 6.370e-20 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 166 ALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDDALYKTGDQAFMTKVKIDVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLSADK--PQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 639
ALAK+G G KQ+ FG +G D S + + TYSPYSPY G++AL+K + A K+ + +S+KR+ + ++E K+WEE+R+ LT + Y LR + L+ +K P+A+ K ++DIE LTV +R+K AY+ AQ +L +
Sbjct: 69 ALAKSGEGPKQSVFG-LGGDAA----SSPFVQDVPTYSPYSPYGTGENALFKPLN-ADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRSGQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRAQADFDAFLKAL 222
BLAST of mRNA_E-fasciculatus_F_contig1293.2222.1 vs. uniprot
Match: K0SUU3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUU3_THAOC) HSP 1 Score: 81.6 bits (200), Expect = 1.730e-15 Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 1
Query: 136 VAATAAVAAPALAKAGTGAKQNW--FGVIGADQELGGGMSNYFAESDT-YSPYSPYSK--GDDALYKTGDQAFMTKVKIDVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLSADKPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLSLI 639
+AA AAV APA A A G + FGVIG G + +S YSPYS Y DALY + + + K + +SQKRL +P ++E K+W ++ LT Y R A+ L A+ P+ +AK F++ IE+ ++ A KN C A D+ + L ++++ +
Sbjct: 43 IAAAAAVIAPAAANAAAGESPRFSVFGVIGDGTSYSEGAAYGSDQSSAVYSPYSVYGNVGSSDALYSANNAGEVERKK-GFIAESQKRLSKLPAYVERKEWFNVKDELTRYMYETRGAVRGL-AETPEQKKIAKSFFQAIEEASLQATLKNQDKCAAASADSAKLLDQFVASL 213
BLAST of mRNA_E-fasciculatus_F_contig1293.2222.1 vs. uniprot
Match: D5KXJ1_GALSU (Photosystem II extrinsic protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D5KXJ1_GALSU) HSP 1 Score: 54.3 bits (129), Expect = 2.070e-5 Identity = 45/162 (27.78%), Postives = 71/162 (43.83%), Query Frame = 1
Query: 166 ALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDDALYKTGDQAFMTKVKIDVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLSAD------KPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLS 633
A AK+G AK + FGV G + SKG LYK ++ +++ + D + L +PG+I K WE+I+SL+ + LR A + A + +A + F + IE + ARQKNG +A A + L ++ S
Sbjct: 78 ASAKSGESAKLSIFGVEGLSSPFTADLK---------------SKGQP-LYKNLNEEEISRYT-KAITDGKASLSKIPGYINEKSWEDIKSLVRQRVADLRSAQKKMMASISEQRIRQKAEKLYDSFIKSIEDIDYAARQKNGDKVRQAQQQAMKLLQEWAS 222
BLAST of mRNA_E-fasciculatus_F_contig1293.2222.1 vs. uniprot
Match: D6PTH0_GALSU (Photosystem II Q n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D6PTH0_GALSU) HSP 1 Score: 54.3 bits (129), Expect = 2.080e-5 Identity = 45/162 (27.78%), Postives = 71/162 (43.83%), Query Frame = 1
Query: 166 ALAKAGTGAKQNWFGVIGADQELGGGMSNYFAESDTYSPYSPYSKGDDALYKTGDQAFMTKVKIDVLKDSQKRLQTVPGFIEGKKWEEIRSLLTAKAYSLRDAMNTLSAD------KPQAAGVAKVFYRDIEQLTVYARQKNGPACTKAYNDAQEHLTKYLS 633
A AK+G AK + FGV G + SKG LYK ++ +++ + D + L +PG+I K WE+I+SL+ + LR A + A + +A + F + IE + ARQKNG +A A + L ++ S
Sbjct: 79 ASAKSGESAKLSIFGVEGLSSPFTADLK---------------SKGQP-LYKNLNEEEISRYT-KAITDGKASLSKIPGYINEKSWEDIKSLVRQRVADLRSAQKKMMASISEQRIRQKAEKLYDSFIKSIEDIDYAARQKNGDKVRQAQQQAMKLLQEWAS 223 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1293.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1293.2222.1 >prot_E-fasciculatus_F_contig1293.2222.1 ID=prot_E-fasciculatus_F_contig1293.2222.1|Name=mRNA_E-fasciculatus_F_contig1293.2222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=214bp MKFTAASVLVGLTTSQAFMVQPSMKTAGPDGGSSRADFAKLVTGTVAATAback to top mRNA from alignment at E-fasciculatus_F_contig1293:10918..14501- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1293.2222.1 ID=mRNA_E-fasciculatus_F_contig1293.2222.1|Name=mRNA_E-fasciculatus_F_contig1293.2222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1293:10918..14501- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1293:10918..14501- >mRNA_E-fasciculatus_F_contig1293.2222.1 ID=mRNA_E-fasciculatus_F_contig1293.2222.1|Name=mRNA_E-fasciculatus_F_contig1293.2222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1293:10918..14501- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |