mRNA_E-fasciculatus_F_contig12928.2218.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12928.2218.1
Unique NamemRNA_E-fasciculatus_F_contig12928.2218.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12928.2218.1 vs. uniprot
Match: D8LJF0_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ARPGASVCKDCLSDVGSLLAVAMAPAEAARTTMEDA-----THLRYP 126
            ARPGASVCKDCLSDVGSLLAVAMAPAEAARTTME A      ++R+P
Sbjct:  907 ARPGASVCKDCLSDVGSLLAVAMAPAEAARTTMEFARLGIAAYIRHP 953
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12928.2218.1 vs. uniprot
Match: A0A6H5KM70_9PHAE (C2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM70_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.540e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 ARPGASVCKDCLSDVGSLLAVAMAPAEAARTTME 102
            ARPGASVCKDCLSDVGSLLAVAMAPAEAARTTME
Sbjct:  783 ARPGASVCKDCLSDVGSLLAVAMAPAEAARTTME 816
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12928.2218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJF0_ECTSI3.510e-1078.72C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KM70_9PHAE6.540e-10100.00C2 domain-containing protein (Fragment) n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12928contigE-fasciculatus_F_contig12928:2821..3730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog2880.D8LJF0
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
Ec32 ortholog descriptionC2 domain protein
Ec32 orthologEc-06_010050.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size373
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927796.831351-CDS-E-fasciculatus_F_contig12928:2820..29221622927796.831351-CDS-E-fasciculatus_F_contig12928:2820..2922Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12928 2821..2922 +
1695995698.9006646-CDS-E-fasciculatus_F_contig12928:2820..29221695995698.9006646-CDS-E-fasciculatus_F_contig12928:2820..2922Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12928 2821..2922 +
1622927796.851754-CDS-E-fasciculatus_F_contig12928:3461..37281622927796.851754-CDS-E-fasciculatus_F_contig12928:3461..3728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12928 3462..3728 +
1695995698.9107697-CDS-E-fasciculatus_F_contig12928:3461..37281695995698.9107697-CDS-E-fasciculatus_F_contig12928:3461..3728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12928 3462..3728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12928.2218.1prot_E-fasciculatus_F_contig12928.2218.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12928 2821..3728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12928.2218.1

>prot_E-fasciculatus_F_contig12928.2218.1 ID=prot_E-fasciculatus_F_contig12928.2218.1|Name=mRNA_E-fasciculatus_F_contig12928.2218.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
ARPGASVCKDCLSDVGSLLAVAMAPAEAARTTMEDATHLRYPTVLPDSTA
VTPLAVTAFPAPRGGFGPLTVASCAAFDPLRRSDWADHAAPVLVAPSVER
AAEVESAAGDIWSTVVREAAAAS
back to top

mRNA from alignment at E-fasciculatus_F_contig12928:2821..3730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12928.2218.1 ID=mRNA_E-fasciculatus_F_contig12928.2218.1|Name=mRNA_E-fasciculatus_F_contig12928.2218.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=910bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12928:2821..3730+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAGACCGGGGGCGTCGGTGTGCAAGGACTGCCTGAGCGATGTCGGGAG
CCTGCTGGCGGTGGCGATGGCGCCGGCGGAGGCGGCGAGGACTACCATGG
AGGTGTGCAAGCTACGGGGAAGAGGAGTGCCGGCTTGGTTTGCCCTCTCG
GTTTGCCCTCTCGCAAACGTGCTTGTATAGCAACGCCCCTAGGAGCGTGC
GCCTCATTTTTTTTTAGCTTGTGGAAATGAAGACAAGGGCTTGAAATTTG
CACAAAGACACCCTCGGCAACCCACATAGAGTATCAACCAAGTATGCTGG
GAGAAGTGGAGACCATGGTTGATTGGTCGGTTGGGTTCTCTCCTTACCCG
TTTCGGCATTTCGCCACACGTCTTACATCGCCACGTACACCAGATAGATA
TCCGTGGTTTGGGTTCCAAGCCTTCTCGAAAGGGGCGAAAAACTGAACGT
TCTGGCCGGCGTGCAGTGTCGTTGGGGGGGTGTTCTTCTTAAGGTCGTCG
AAGAAAAGGTTCAAATAAAACTCGCTCGACATGATATGTACGCATAAATT
TTGGTGCCATCTGTATTCCTACCGGCAATTCATCTAACCCCCCTCCCCCT
GAACAAACACGTCGCGACCCCCCTCTCACTGAAATCGTCAGGACGCCACC
CACCTCCGCTACCCTACGGTCCTGCCCGACTCCACCGCCGTCACCCCCCT
AGCGGTGACCGCCTTCCCCGCCCCGCGCGGCGGTTTCGGCCCGCTAACCG
TCGCCAGTTGCGCCGCGTTTGACCCGTTGCGCCGCTCCGACTGGGCCGAT
CACGCCGCCCCCGTACTGGTGGCTCCCTCGGTGGAGAGGGCGGCGGAGGT
AGAGTCCGCTGCGGGGGACATTTGGAGTACGGTTGTGAGGGAAGCGGCTG
CGGCCAGCGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12928:2821..3730+

>mRNA_E-fasciculatus_F_contig12928.2218.1 ID=mRNA_E-fasciculatus_F_contig12928.2218.1|Name=mRNA_E-fasciculatus_F_contig12928.2218.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12928:2821..3730+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAGACCGGGGGCGTCGGTGTGCAAGGACTGCCTGAGCGATGTCGGGAG
CCTGCTGGCGGTGGCGATGGCGCCGGCGGAGGCGGCGAGGACTACCATGG
AGGCGAGACCGGGGGCGTCGGTGTGCAAGGACTGCCTGAGCGATGTCGGG
AGCCTGCTGGCGGTGGCGATGGCGCCGGCGGAGGCGGCGAGGACTACCAT
GGAGGACGCCACCCACCTCCGCTACCCTACGGTCCTGCCCGACTCCACCG
CCGTCACCCCCCTAGCGGTGACCGCCTTCCCCGCCCCGCGCGGCGGTTTC
GGCCCGCTAACCGTCGCCAGTTGCGCCGCGTTTGACCCGTTGCGCCGCTC
CGACTGGGCCGATCACGCCGCCCCCGTACTGGTGGCTCCCTCGGTGGAGA
GGGCGGCGGAGGTAGAGTCCGCTGCGGGGGACATTTGGAGTACGGTTGTG
AGGGAAGCGGCTGCGGCCAGCGACGCCACCCACCTCCGCTACCCTACGGT
CCTGCCCGACTCCACCGCCGTCACCCCCCTAGCGGTGACCGCCTTCCCCG
CCCCGCGCGGCGGTTTCGGCCCGCTAACCGTCGCCAGTTGCGCCGCGTTT
GACCCGTTGCGCCGCTCCGACTGGGCCGATCACGCCGCCCCCGTACTGGT
GGCTCCCTCGGTGGAGAGGGCGGCGGAGGTAGAGTCCGCTGCGGGGGACA
TTTGGAGTACGGTTGTGAGGGAAGCGGCTGCGGCCAGC
back to top