mRNA_E-fasciculatus_F_contig12925.2216.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12925.2216.1
Unique NamemRNA_E-fasciculatus_F_contig12925.2216.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A6H5JKF5_9PHAE (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKF5_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 3.710e-59
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDESPEECHAGVF 294
            LITPSDD+GACDVFLKVFTGPPGPTPASLL+ IKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDE+PEECHA + 
Sbjct:  284 LITPSDDDGACDVFLKVFTGPPGPTPASLLKKIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDENPEECHAAIL 376          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A836CN01_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN01_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.270e-38
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDESPEECHAGVF 294
            L+ PSDD+GAC+VFLKVF GPPGP+P  LL NIK TK+LA+WG+ DPWTPL TGLH G    +Y  + +L+VLP+T HCPHDE PEEC+A V 
Sbjct:  274 LLAPSDDDGACEVFLKVFRGPPGPSPEELLPNIK-TKILAIWGDSDPWTPLATGLHPGIKFSEYCSSLQLLVLPKTAHCPHDERPEECNAAVL 365          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A7S2UKP1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKP1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.750e-32
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDESP 270
            L+ PS+D+GA +VFLKVF GPPGPTP S+L NI +  +LALWG+ DPWTPL+ GLH G T G Y D F+LV LP  GHCPHDE+P
Sbjct:  301 LLGPSEDDGAQEVFLKVFAGPPGPTPESILPNI-NVPILALWGDSDPWTPLEGGLHPGSTFGNYTDDFKLVSLPGAGHCPHDEAP 384          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A6V1NEZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NEZ5_HETAK)

HSP 1 Score: 118 bits (296), Expect = 7.090e-32
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDESPE 273
            L+ PSDD+GAC+VFLKVF GP GP+P +LL  +  T VLALWGE DPWTPL  GLH G    +Y DT +L+ LP+ GHCPHD+ P+
Sbjct:   65 LLAPSDDDGACEVFLKVFRGPAGPSPEALLPTVA-TPVLALWGEDDPWTPLCYGLHPGMKFPEYCDTLKLIPLPDCGHCPHDDRPD 149          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A7S1CX92_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CX92_CYCTE)

HSP 1 Score: 117 bits (292), Expect = 7.670e-30
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDT-KVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDESPEECH 282
            L+ PSDD GA DVFLKVF GPPGPTP S+L  + D   +LALWG+ DPWTP+  G+H G  L  Y   F L+ +P  GHCPHDE P++ H
Sbjct:  198 LLGPSDDVGAEDVFLKVFAGPPGPTPKSILTKLNDDIPILALWGDADPWTPIDGGMHPGTQLATYHPKFTLIPIPGAGHCPHDECPDKIH 287          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A7S0G7B3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7B3_9RHOD)

HSP 1 Score: 112 bits (279), Expect = 1.430e-29
Identity = 51/92 (55.43%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPL--KTGL--HAGDTLGQYLDTFELVVLPETGHCPHDESPEEC 279
            L TPS+DE A  VFLKV  GPPGPTP SLLQ +     LA+WG+ DPWTP+  + G+  H G    +Y   F+L +L ETGHCPHDE PE+C
Sbjct:   29 LFTPSEDENASSVFLKVLDGPPGPTPESLLQKLSWCPSLAIWGQADPWTPIGNENGMNFHPGSKFSEYHPNFQLFMLNETGHCPHDERPEQC 120          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A7R9ZR09_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZR09_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.910e-29
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLD-TFELVVLPETGHCPHDESPEECHAGVF 294
            L+ PSDD GA  VFLK F GPPGPTP S+L  + D  +LALWG  DPWTP   G+H GD+  QY    FE+VVL  TGHCPHDE PE+ ++ + 
Sbjct:  177 LLGPSDDAGAQQVFLKTFAGPPGPTPESILPTL-DVPILALWGGADPWTPYDGGMHPGDSFEQYAKGPFEMVVLDNTGHCPHDERPEQVNSKML 269          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A7S3AA67_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AA67_9RHOD)

HSP 1 Score: 111 bits (277), Expect = 3.780e-27
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPL--KTGL--HAGDTLGQYLDTFELVVLPETGHCPHDESPEEC 279
            L TPS+DE A  VFLKV  GPPGPTP SLL+ +    ++A+WG+ DPWTP+  + G+  H G    +Y   F+L +L ETGHCPHDE PEEC
Sbjct:  250 LFTPSEDENASSVFLKVLDGPPGPTPESLLEQLSWCPLIAIWGQADPWTPVGNENGMNFHPGCEFSEYHPNFQLFMLDETGHCPHDERPEEC 341          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A4D9CMK4_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMK4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.600e-27
Identity = 50/90 (55.56%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDESPEECHA 285
            L+TP  D+GA +VFLKV   P GP+P  LL  I+   V+ +WGE DPWTPL TG+H G    QY   F L  LP+TGHCPHDE P EC A
Sbjct:  336 LLTPGQDDGAEEVFLKVLRAPAGPSPEELLPRIQ-VPVIGIWGEKDPWTPLATGMHPGIRFSQYQPAFRLFPLPDTGHCPHDERPAECLA 424          
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Match: A0A7S3LD40_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD40_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.810e-24
Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   16 LITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGELDPWTPLKTGLHAGDTLGQYLD--TFELVVLPETGHCPHDESPEECH 282
            L+ P+DD+GA DVFL+VF GPPGPTP SLL NI    +L  WG+ DPWTPL +G H    L  Y    ++ L VL   GHCPHDE PE  H
Sbjct:  275 LLGPADDKGAEDVFLRVFGGPPGPTPESLLPNIV-CPILVQWGDEDPWTPLDSGAHPATQLELYYKGPSWTLDVLTNAGHCPHDEQPERIH 364          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12925.2216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKF5_9PHAE3.710e-5992.47AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A836CN01_9STRA2.270e-3864.52Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S2UKP1_9STRA2.750e-3264.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6V1NEZ5_HETAK7.090e-3260.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1CX92_CYCTE7.670e-3056.67Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0G7B3_9RHOD1.430e-2955.43Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7R9ZR09_9STRA1.910e-2956.38Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3AA67_9RHOD3.780e-2754.35Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A4D9CMK4_9STRA7.600e-2755.56AB hydrolase-1 domain-containing protein n=1 Tax=N... [more]
A0A7S3LD40_9STRA7.810e-2454.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12925contigE-fasciculatus_F_contig12925:3050..3623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue7.6e-49
Seed eggNOG ortholog2880.D7G2G0
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927796.650618-CDS-E-fasciculatus_F_contig12925:3049..32351622927796.650618-CDS-E-fasciculatus_F_contig12925:3049..3235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12925 3050..3235 -
1695995698.8496406-CDS-E-fasciculatus_F_contig12925:3049..32351695995698.8496406-CDS-E-fasciculatus_F_contig12925:3049..3235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12925 3050..3235 -
1622927796.6710665-CDS-E-fasciculatus_F_contig12925:3497..36231622927796.6710665-CDS-E-fasciculatus_F_contig12925:3497..3623Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12925 3498..3623 -
1695995698.8596995-CDS-E-fasciculatus_F_contig12925:3497..36231695995698.8596995-CDS-E-fasciculatus_F_contig12925:3497..3623Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12925 3498..3623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12925.2216.1prot_E-fasciculatus_F_contig12925.2216.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12925 3050..3623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12925.2216.1

>prot_E-fasciculatus_F_contig12925.2216.1 ID=prot_E-fasciculatus_F_contig12925.2216.1|Name=mRNA_E-fasciculatus_F_contig12925.2216.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
GCCVSLITPSDDEGACDVFLKVFTGPPGPTPASLLQNIKDTKVLALWGEL
DPWTPLKTGLHAGDTLGQYLDTFELVVLPETGHCPHDESPEECHAGVFCA
AGC*
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mRNA from alignment at E-fasciculatus_F_contig12925:3050..3623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12925.2216.1 ID=mRNA_E-fasciculatus_F_contig12925.2216.1|Name=mRNA_E-fasciculatus_F_contig12925.2216.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=574bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12925:3050..3623- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTGCTGCGTCAGTTTGATTACTCCGAGCGACGACGAGGGGGCTTGTGA CGTGTTCCTCAAGGTGTTCACGGGGCCGCCGGGGCCCACCCCTGCCTCTT TGCTGCAGAACATCAAGGACACCAAGGTATGTAGGTAGGGGGTCGAGTGT TGAGCCCCTCCCGCGTAATTTACATGCAAGAAGTGTGAAGCAGGCAAGCA CCGCAGGAAGCAAAACGGAGGGGAGGAAACGCTCCGTATGACGAAAATCT TCCTTTCGTGTGAGACCCGGCTGGTGCGTCAAATTTTGCAAGGACGCCTG CTTTGGGTTTTCGCGATGGCTTCTACGGTCTTTGCATTCGATCAAACTCA AACAAAGAAACGCGCTTCCCACTGCGATACGTGTATAGGTCCTTGCTTTG TGGGGCGAGTTGGACCCCTGGACCCCCCTCAAGACCGGCCTGCACGCCGG GGACACCCTCGGCCAGTACCTCGACACGTTCGAGCTGGTGGTCCTGCCCG AGACTGGCCACTGTCCCCACGACGAGAGCCCGGAGGAGTGCCACGCAGGT GTGTTTTGTGCCGCTGGGTGTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12925:3050..3623-

>mRNA_E-fasciculatus_F_contig12925.2216.1 ID=mRNA_E-fasciculatus_F_contig12925.2216.1|Name=mRNA_E-fasciculatus_F_contig12925.2216.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12925:3050..3623- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTGCTGCGTCAGTTTGATTACTCCGAGCGACGACGAGGGGGCTTGTGA
CGTGTTCCTCAAGGTGTTCACGGGGCCGCCGGGGCCCACCCCTGCCTCTT
TGCTGCAGAACATCAAGGACACCAAGGGCTGCTGCGTCAGTTTGATTACT
CCGAGCGACGACGAGGGGGCTTGTGACGTGTTCCTCAAGGTGTTCACGGG
GCCGCCGGGGCCCACCCCTGCCTCTTTGCTGCAGAACATCAAGGACACCA
AGGTCCTTGCTTTGTGGGGCGAGTTGGACCCCTGGACCCCCCTCAAGACC
GGCCTGCACGCCGGGGACACCCTCGGCCAGTACCTCGACACGTTCGAGCT
GGTGGTCCTGCCCGAGACTGGCCACTGTCCCCACGACGAGAGCCCGGAGG
AGTGCCACGCAGGTGTGTTTTGTGCCGCTGGGTGTTGAGTCCTTGCTTTG
TGGGGCGAGTTGGACCCCTGGACCCCCCTCAAGACCGGCCTGCACGCCGG
GGACACCCTCGGCCAGTACCTCGACACGTTCGAGCTGGTGGTCCTGCCCG
AGACTGGCCACTGTCCCCACGACGAGAGCCCGGAGGAGTGCCACGCAGGT
GTGTTTTGTGCCGCTGGGTGTTGA
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