mRNA_E-fasciculatus_F_contig12921.2213.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI) HSP 1 Score: 256 bits (655), Expect = 8.820e-83 Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAKVRWTAVVFVIV 441
QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAKV V ++V
Sbjct: 220 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAKVLLLVAVVLVV 361
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA) HSP 1 Score: 174 bits (442), Expect = 9.110e-48 Identity = 103/197 (52.28%), Postives = 114/197 (57.87%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ------------------------------------------------------------------DLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAVVRKDFE AN++LPSIP EYTAVARFLESQGFK+EA DLGGLLLLHSSTGN G+ ALA DA KAG+TNV FL+LF+ G++EECLELLV AGR+PEAAFMARTYLPS M RLVELWKKDL +VS K
Sbjct: 599 QTAVVRKDFEAANALLPSIPASEYTAVARFLESQGFKEEALAVSRDPDHRFDLACELGKLALARELLDAIPPAEYDTLDSQTKWKRLGDLALSECDMALVEKCAANSGDLGGLLLLHSSTGNAAGLAALAADAAKAGKTNVGFLALFLLGRLEECLELLVKAGRLPEAAFMARTYLPSEMPRLVELWKKDLQSVSVK 795
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A6H5K868_9PHAE (Coatomer_WDAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K868_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.420e-41 Identity = 103/181 (56.91%), Postives = 108/181 (59.67%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ-------------DLGGLLLLHS----------------STGNREGMLALAEDA-RKAGRTNVAFLS--------------------LFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ +LG L S R G LAL A R A + + A +S G+VEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK
Sbjct: 67 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQVSLDPEHKFDLALELGKLTDARQILDEMPKEEYDTTDAQSKWKRLGDLALTNTAQRSAAQRSAAAVSYDPGENKTATATITTRTTPRFLWAGQVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 247
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A7S2XXQ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.920e-37 Identity = 85/197 (43.15%), Postives = 108/197 (54.82%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ------------------------------------------------------------------DLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAVVRKDF+ AN++LPSIP E++ VARFLESQGFK EA D+ GLLLL++STG+ GM+ LA A+K GRTNVAFL+LF+ G+VEECL+LLV + R+PEAAFMARTYLPS + R+V+LWK++L S +
Sbjct: 597 QTAVVRKDFDAANALLPSIPVSEHSDVARFLESQGFKQEAMAVTRDPEHKFDLALELGLLEEAQTLLSEQPAEDAETTEGQSKWRRLGDLALQKGKLDLVEQCALTSGDVSGLLLLYTSTGSTAGMVDLAAQAKKLGRTNVAFLALFLLGRVEECLDLLVESNRIPEAAFMARTYLPSQVSRIVKLWKEELGKTSER 793
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A7S2G0J9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0J9_9STRA) HSP 1 Score: 134 bits (336), Expect = 3.650e-35 Identity = 80/197 (40.61%), Postives = 101/197 (51.27%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQ------------------------------------------------------------------DLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAVVR D E AN ILPSIP+ E+ +VARFLESQG K+EA D GLLLL++ TGN EG LA A++ G+TNVAF+SLF+ G++EEC+ELL+ GR+PEAAF+ARTY+PS M ++V WK DL VS +
Sbjct: 74 QTAVVRDDIEAANEILPSIPESEHNSVARFLESQGLKEEALGVTKDPDQKFDLSLELGKLDVAYEILLQIPEADKDTTDTQSKWKRLGDLALSTGDLPRAEQCAEASGDTAGLLLLYTCTGNAEGAKKLAVQAKELGKTNVAFISLFLLGRIEECIELLMQTGRIPEAAFLARTYMPSEMPQIVIKWKADLTKVSER 270
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A7S2EB92_TRICV (Coatomer subunit beta' n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB92_TRICV) HSP 1 Score: 138 bits (348), Expect = 3.840e-35 Identity = 82/195 (42.05%), Postives = 101/195 (51.79%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAF------------------------------------------------------------------QDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVS 402
QTAV+R DF+ AN +LPSIP+ EYTAVARFLESQGFK+EA D GLLLL+S+TGN EGM LA+ A K G+TNVAF++ + G VE C +LL+S R+PEAAF ARTYLPS + +V LWK+DL+ VS
Sbjct: 450 QTAVMRGDFDAANELLPSIPESEYTAVARFLESQGFKEEAMAVTTDPDHKFDLALELGHIDVAHNLLNETPDEDRDSTDTMGKWKRLSDAALKVSDLGLCESASISSNDFSGLLLLYSATGNSEGMETLAKSAEKGGKTNVAFVAYLLTGNVEACADLLISTKRLPEAAFFARTYLPSRVNEIVSLWKEDLSKVS 644
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A2C9KDB7_BIOGL (Coatomer_WDAD domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KDB7_BIOGL) HSP 1 Score: 137 bits (344), Expect = 5.920e-35 Identity = 80/189 (42.33%), Postives = 101/189 (53.44%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAF----------------------------------------------------------QDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAV+R+DF+TA+ +LP++P+ + T VA FLE QGFK +A D GGLLLL SS GNRE + L E A K+G+ NVAFLS FV GK EECLE+L++ GR+PEAAF ARTYLPS + R+V LWKK +A V+ K
Sbjct: 215 QTAVMRRDFDTADKVLPTVPREQRTRVAHFLEKQGFKSQAMAVTCDPEHKFELAIQLGDLRTAYELAKETQSDQKWKQLAELAIKRCEFGLAQECLHQAHDYGGLLLLASSAGNREMVSKLGEAAEKSGQNNVAFLSNFVLGKCEECLEILINTGRLPEAAFFARTYLPSQISRVVSLWKKSVANVNKK 403
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A1S3J2M3_LINUN (Coatomer subunit beta' n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J2M3_LINUN) HSP 1 Score: 136 bits (342), Expect = 2.630e-34 Identity = 78/189 (41.27%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAF----------------------------------------------------------QDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAV+R+DF+TA+ +LP+IP+ + T VA FLE QGFK +A QD GGLLLL SS GN E + L E AR +G+ NV+FLS F GK+EECLE+L+S GR+PEAAF ARTYLPS + R+V+LW++ L+T++ K
Sbjct: 595 QTAVMRRDFDTADKVLPTIPREQRTRVAHFLEKQGFKSQALAVTTDPEHKFELSLGLGDLKTSYQIAKESESEQKWKQLAELATSKCEFGLAQECLHQAQDFGGLLLLASSAGNTEMVQKLGETARASGQNNVSFLSYFALGKLEECLEVLISTGRLPEAAFFARTYLPSQISRVVQLWREHLSTINKK 783
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: A0A8J1TRJ5_OWEFU (Coatomer subunit beta' n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TRJ5_OWEFU) HSP 1 Score: 135 bits (341), Expect = 3.600e-34 Identity = 80/189 (42.33%), Postives = 99/189 (52.38%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAF----------------------------------------------------------QDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAV+R+DFETA+ +LP+IP+ + T VA FLE QGFK +A QD GGLLLL SS GN + L E A K G+ NVAFLS F G++E CLE+L+S GR+PEAAF ARTY+PS + +VELWKKDLA V+ K
Sbjct: 595 QTAVMRQDFETADKVLPTIPREQRTRVAHFLEKQGFKSQALAVTCDPEHKFELALHLGDLKIAYTLAKEAESEQKWKQLAELATSKCEMGLAQECLHQAQDFGGLLLLASSAGNGRMVAKLGETAEKTGQNNVAFLSYFSLGQIERCLEVLISTGRLPEAAFFARTYMPSRVSGIVELWKKDLAKVNVK 783
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Match: V4BQF1_LOTGI (Coatomer subunit beta' n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BQF1_LOTGI) HSP 1 Score: 135 bits (340), Expect = 4.900e-34 Identity = 76/189 (40.21%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 16 QTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAF----------------------------------------------------------QDLGGLLLLHSSTGNREGMLALAEDARKAGRTNVAFLSLFVCGKVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAK 408
QTAV+R+DF+TA+ +LP++P+ + T VA FLE QGFK +A QD GGL+LL SS GNR+ + L A KAG+ NVAFLS F G+VEECL++L+ GR+PEAAF ARTYLPS + R+V+LW+++LAT++ K
Sbjct: 595 QTAVMRRDFDTADKVLPTVPREQRTRVAHFLEKQGFKSQALAVTCDPEHKFELAIQLGDLKIAYTLAKEAESEQKWKQLSELAIKNCEFGLAQECLHQAQDFGGLMLLASSAGNRDMVERLGHTAEKAGQNNVAFLSYFTLGRVEECLDVLIKTGRLPEAAFFARTYLPSQISRVVKLWRENLATINKK 783 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12921.2213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12921.2213.1 >prot_E-fasciculatus_F_contig12921.2213.1 ID=prot_E-fasciculatus_F_contig12921.2213.1|Name=mRNA_E-fasciculatus_F_contig12921.2213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=148bp MFAAIQTAVVRKDFETANSILPSIPKGEYTAVARFLESQGFKDEAFQDLGback to top mRNA from alignment at E-fasciculatus_F_contig12921:630..3791+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12921.2213.1 ID=mRNA_E-fasciculatus_F_contig12921.2213.1|Name=mRNA_E-fasciculatus_F_contig12921.2213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3162bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12921:630..3791+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12921:630..3791+ >mRNA_E-fasciculatus_F_contig12921.2213.1 ID=mRNA_E-fasciculatus_F_contig12921.2213.1|Name=mRNA_E-fasciculatus_F_contig12921.2213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12921:630..3791+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |