mRNA_E-fasciculatus_F_contig12916.2208.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Match: D8LKQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKQ0_ECTSI) HSP 1 Score: 460 bits (1184), Expect = 5.830e-158 Identity = 264/288 (91.67%), Postives = 274/288 (95.14%), Query Frame = 1
Query: 1 QITDTSAANHAQRRRQSNRVLNARRTVRVVSSTKPRSAGRRXXXXXXXXXXXXXXXXXXXX-ILGAVIAYCCLSAPFLAEAFLLPPARAVLAQRETAATARVMAAKGFGKSVEPPSPAPAATGGEEGGGKAPESDGLTGVGSWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDARKEDKLNETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVSTMPSDTGLDGVIDVN 861
+ DTS ANH +R RQ++ VL++RRTVRV+SS KPRSA XXXXXXXXXXXXXXXXXXXX ILGAVIAYCCLSAPFLAEAFLLPPARA LAQRETAATARVMAAKGFGKSVEPPSPAPA TGGEEGGGKAP S+GL+GVGSWEKEYKAYIKRTGQYLCSMSWEGH+EMGRGAIFANYDDARKEDKLNETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVSTMPSDTGLDGVIDVN
Sbjct: 2 EFPDTSPANHTRRCRQNSLVLSSRRTVRVISSAKPRSAXXXXXXXXXXXXXXXXXXXXXXXXILGAVIAYCCLSAPFLAEAFLLPPARAGLAQRETAATARVMAAKGFGKSVEPPSPAPATTGGEEGGGKAPGSEGLSGVGSWEKEYKAYIKRTGQYLCSMSWEGHQEMGRGAIFANYDDARKEDKLNETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVSTMPSDTGLDGVIDVN 289
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Match: A0A836CCX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX0_9STRA) HSP 1 Score: 154 bits (388), Expect = 4.100e-40 Identity = 69/125 (55.20%), Postives = 93/125 (74.40%), Query Frame = 1
Query: 424 WEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDARKEDKLNETD-KFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHV 795
WE+EYKA+I+R G Y+CS+SW+ +E+MGRGA+++NYD + L+E D K GGIPSM+ PL EFE+M GE +DL QI++R+K Y P +EFVVVFQA GV GADI P++ PP++AK V
Sbjct: 36 WEREYKAFIRRCGAYVCSLSWQAYEKMGRGAVYSNYDGGKAAGTLSEADEKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAKQV 160
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Match: W7TWP7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWP7_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.960e-34 Identity = 97/224 (43.30%), Postives = 124/224 (55.36%), Query Frame = 1
Query: 214 LSAPFLAEAFLLPPARAVLAQRETAATARVMAAKGFGKSV-------EPPSPAPAATGGEEGGGKAPESDGLTGVGSWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDARKEDK---LNETDKFGGIPSMYVPLTEF-ESMKAA--GQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVSTMPSDTGLDG 846
L A A AFLLP RA L TA +V+ A G + EPP +EG E++ L WE EY AY+KR G +LC+MSW G++ GRGAI A Y+D + + L+E D+ G+PSMYV L + ES +AA G E DL QI+ RV Y PER FVVVFQA G+MGADIV PNVSPP+MA+ ++ + P +DG
Sbjct: 12 LLAVHTAHAFLLP--RASLPPSTTALEQQVLRATGTSSTPQFNLRYGEPPP--------QEG-----EAERLNRQKRWEAEYLAYVKRNGAHLCAMSWRGYQAEGRGAILAKYEDKDMDQEGRTLSEIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKES-DLAPQTIDVDG 219
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Match: A0A7S2WW30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW30_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.790e-29 Identity = 64/125 (51.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 424 WEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDARKEDKLNETDKFGGIPSMYVPLTEFESMKAAGQ---EAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAK 789
WEK+YK+ + R G+ L +MSW+G E+MGRG I ANYD+ E+DK+G IPSMYVP E+ AGQ AGEE QI R++ Y PEREFVVVF A G+MG D+V P + PPE+ +
Sbjct: 61 WEKQYKSMLARIGEDLTAMSWDGFEKMGRGVILANYDNVTA---ATESDKYGSIPSMYVP----EAQIKAGQINLAAGEESSFDQIASRLESYDPEREFVVVFHAEGLMGTDVVTPCIPPPEVCR 178
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Match: A0A7S3EJF2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJF2_9RHOD) HSP 1 Score: 110 bits (275), Expect = 1.240e-24 Identity = 62/153 (40.52%), Postives = 91/153 (59.48%), Query Frame = 1
Query: 301 VMAAKGFGKSVEPPSPAPAATGGEEGGGKAPESDGLTGVGSWEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDARKEDKL-NETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIV 756
V AKGFGKS + P++ VG W+KEYKA++KR G+ +C+M ++G+ +GRGA+FANY +A DK+ ++ D +PSMYVP+ + ++A + + D+ I RV Y PE++FVVVF+ GVMGADIV
Sbjct: 34 VSLAKGFGKS-------------RSSADEIPQAQSAGQVGVWQKEYKAFLKRNGKDICAMCYDGYRRLGRGAVFANYSEAM--DKVESDIDLAQSVPSMYVPMDKLR--ESASRRPSQGGDMKHITDRVARYDPEKQFVVVFECNGVMGADIV 169
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Match: A0A0G4ERJ3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ERJ3_VITBC) HSP 1 Score: 101 bits (252), Expect = 9.070e-21 Identity = 56/143 (39.16%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 424 WEKEYKAYIKRTGQYLCSMSWEGHEEMGRGAIFANYDDARKEDK---------LNETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVSTMP 825
WEK Y+ ++ +G C+ +W G+E+MGRGA+ Y + ++E + + K P+MY P +F S KA +E EE L Q+ RR+ Y P +EFVVVFQ++G+MGADIV+PN++P E A+ + K + T P
Sbjct: 98 WEKSYQENVRASGFSWCAQAWMGYEKMGRGAVMV-YHELKQEGEGEGGDGAATATKATKMDVAPTMYAPAEKF-SKKAGSRE--EESHLAQVRRRLDSYDPHKEFVVVFQSSGLMGADIVKPNMAPAEAAR-IYKEENNLTQP 235
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Match: A0A7S2ZY89_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZY89_9RHOD) HSP 1 Score: 70.1 bits (170), Expect = 1.680e-10 Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query: 508 RGAIFANYDDARKEDKL-NETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRP 762
RGA+FANY +A DK+ ++ D +PSMYVP+ + ++A + + D+ I RV Y PE++FVVVF+ GVMGADIV P
Sbjct: 1 RGAVFANYSEAM--DKVESDIDLAQSVPSMYVPMDKLR--ESASRRPSQGGDMKHITDRVARYDPEKQFVVVFECNGVMGADIVTP 82 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12916.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12916.2208.1 >prot_E-fasciculatus_F_contig12916.2208.1 ID=prot_E-fasciculatus_F_contig12916.2208.1|Name=mRNA_E-fasciculatus_F_contig12916.2208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=237bp MSTTTTTTAAILGAVIAYCCLSAPFLAEAFLLPPARAVLAQRETAATARVback to top mRNA from alignment at E-fasciculatus_F_contig12916:2..3534- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12916.2208.1 ID=mRNA_E-fasciculatus_F_contig12916.2208.1|Name=mRNA_E-fasciculatus_F_contig12916.2208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12916:2..3534- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12916:2..3534- >mRNA_E-fasciculatus_F_contig12916.2208.1 ID=mRNA_E-fasciculatus_F_contig12916.2208.1|Name=mRNA_E-fasciculatus_F_contig12916.2208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12916:2..3534- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |