mRNA_E-fasciculatus_F_contig12909.2202.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12909.2202.1
Unique NamemRNA_E-fasciculatus_F_contig12909.2202.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12909.2202.1 vs. uniprot
Match: D7FSF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF5_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 5.210e-84
Identity = 140/163 (85.89%), Postives = 141/163 (86.50%), Query Frame = 1 
Query:    1 GKGDVRLLGNGDSNGGCGRGRAGEGPACGGGQRCAHQHXXXXXXXXX--EVSAGQAAA-----NSRGLPPALCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRRNGGQAISEGWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQATSTHRC 468
            GKGDVRLLGNGDSNG CGRGR GE P+CGGGQRCAHQH    XXXXX  EVSAG AAA     N RGLPPALCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRRNGGQAISEGWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQ      C
Sbjct:    4 GKGDVRLLGNGDSNGTCGRGRTGEVPSCGGGQRCAHQHAAAAXXXXXXAEVSAGNAAAQGASANPRGLPPALCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRRNGGQAISEGWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQDVEELIC 166
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BLAST of mRNA_E-fasciculatus_F_contig12909.2202.1 vs. uniprot
Match: A0A7S2ATP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATP2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.690e-26
Identity = 52/100 (52.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:  193 LCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRR-------------NGGQAISEGWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQAT 453
            L LRE+Y  D  RLDQLL TFPL  ++KKVQP G+ LRC +HRR             +       GW+WE+AWDRLPA++R KVA IDV AL  A+H AT
Sbjct:   46 LYLRESYQNDPLRLDQLLTTFPLSSVIKKVQPTGMNLRCAVHRRALSATLTMGHVHSHTASEAGGGWDWEEAWDRLPANLRKKVATIDVSALSTAVHHAT 145
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BLAST of mRNA_E-fasciculatus_F_contig12909.2202.1 vs. uniprot
Match: A0A835YPU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.220e-19
Identity = 52/123 (42.28%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:  193 LCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRR------------------------------NGGQAIS--EGWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQATSTHR 465
            L L+EAY  D  RL  LLE FPL  ++KKVQP    LRC +HRR                              N    ++  +GWEW DAWDRLP   R KVA ID   LE+A+H ATS HR
Sbjct:   68 LVLKEAYQNDERRLSLLLEAFPLNAVLKKVQPPSSSLRCPLHRRSACSTPLTASNXXXXXXXXXXXXXXXXSANNSSSTVAALDGWEWMDAWDRLPQQDRCKVATIDAAGLESALHVATSNHR 190
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BLAST of mRNA_E-fasciculatus_F_contig12909.2202.1 vs. uniprot
Match: A0A6H5KD93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD93_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 8.120e-19
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:  169 NSRGLPPALCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRR-----------NGGQAISE---------------------GWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQATSTHR 465
            N  G+  A  L+EAY+ D  R+ QLL+TFP+  ++KK+QP G   RC++HRR            GG    +                      W+WEDAW+R+P ++R +VA +   A EAA+HQAT +++
Sbjct:   51 NGGGMSGAFRLKEAYVKDPKRMGQLLDTFPMSSVLKKIQPMGSAQRCQLHRRLISLSLAGVGSGGGHRAGDXXXXXXXXXXXXXXXGVGSVDSWDWEDAWERMPPNLRNEVATVKAPAFEAAVHQATESNK 181
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BLAST of mRNA_E-fasciculatus_F_contig12909.2202.1 vs. uniprot
Match: D7FQ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ15_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.470e-8
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  169 NSRGLPPALCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVGLRCEIHRR 324
            N  G+  A  L+EAY+ D  R+ QLL+TFP+  ++KKVQP G   RC++HRR
Sbjct:   97 NGGGMSGAFRLKEAYVKDPKRMGQLLDTFPMSSVLKKVQPMGSAQRCQLHRR 148
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12909.2202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSF5_ECTSI5.210e-8485.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2ATP2_9STRA4.690e-2652.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YPU0_9STRA1.220e-1942.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KD93_9PHAE8.120e-1935.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ15_ECTSI4.470e-850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12909contigE-fasciculatus_F_contig12909:31..3086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size514
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.7906864-CDS-E-fasciculatus_F_contig12909:30..2701622927794.7906864-CDS-E-fasciculatus_F_contig12909:30..270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12909 31..270 +
1695995698.0584223-CDS-E-fasciculatus_F_contig12909:30..2701695995698.0584223-CDS-E-fasciculatus_F_contig12909:30..270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12909 31..270 +
1622927794.8074424-CDS-E-fasciculatus_F_contig12909:2812..30851622927794.8074424-CDS-E-fasciculatus_F_contig12909:2812..3085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12909 2813..3085 +
1695995698.0681148-CDS-E-fasciculatus_F_contig12909:2812..30851695995698.0681148-CDS-E-fasciculatus_F_contig12909:2812..3085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12909 2813..3085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12909.2202.1prot_E-fasciculatus_F_contig12909.2202.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12909 31..3085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12909.2202.1

>prot_E-fasciculatus_F_contig12909.2202.1 ID=prot_E-fasciculatus_F_contig12909.2202.1|Name=mRNA_E-fasciculatus_F_contig12909.2202.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
GKGDVRLLGNGDSNGGCGRGRAGEGPACGGGQRCAHQHAAAAAAAAAEVS
AGQAAANSRGLPPALCLREAYLTDRARLDQLLETFPLEPLMKKVQPKGVG
LRCEIHRRNGGQAISEGWEWEDAWDRLPADMRLKVAAIDVDALEAAMHQA
TSTHRCVGIESMLLLLLLLLL
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mRNA from alignment at E-fasciculatus_F_contig12909:31..3086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12909.2202.1 ID=mRNA_E-fasciculatus_F_contig12909.2202.1|Name=mRNA_E-fasciculatus_F_contig12909.2202.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3056bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12909:31..3086+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTAAGGGGGATGTGCGTCTCCTGGGCAACGGTGATAGCAACGGTGGGTG
CGGGCGTGGGCGGGCCGGCGAAGGGCCGGCATGCGGGGGCGGGCAGAGAT
GCGCGCACCAGCACGCGGCGGCGGCGGCGGCGGCGGCAGCAGAGGTTAGC
GCTGGGCAAGCGGCGGCAAATTCGAGGGGGTTGCCTCCGGCGCTTTGCCT
ACGGGAGGCGTACCTGACGGACAGGGCTCGCTTGGATCAGGTTAGAATTG
CTGACGATTCGGAGAGATTTGTTTATTCACTTATTTTGGGATGTGTGCAG
CGTGAGGGTGGAAAGAGAGGGAGAGCGAGCTGGCGGGGGATTGGAGGTAC
TAAAGTTTTGTACTAAAGTTTTGCATGTCTTAGCTTTTCAGACCATTCAC
CACGCGTCCTCAAGAAGACGGGGCATTGCTCCCACAGAACCGATGGCCAA
TCGTTCCTTCCTACTTTGCGAAAGGTGGCTAGGGCCAAAGCACAGTGGCC
TTGTTCTCCTGGCTATTCCATTCCTCAAACATGTACCTTGTACCTTCGCT
CTGCTTTTGCCAGCTCGGTCGTGAAGATTTTTCTCTCCTTGTCGTACAAC
GGGGACATTCCGCAACTATTTACATAAACTGGGGGGGGGGAGGGGATCGA
GAAAATGATGTCTTCATCCGTTCGAAGAGATGCGGTGGTTGAACAAAAAA
GAACTCCCCGCGTAGATTACAGCAGCAGACCTACTCTAGGACGCAGCGAC
ACTCCACTCCTGCATCTGTTTGAACGGCGCTGTTTTATCTGTCAAGGGGT
CGCCCGTTCAGGATAAAATAATTTTCCGAATTGACCAATGTCTTATCGTG
ACCAAGCTGTCGGTGTGCTGTGGCGGCCTTTGGGCCACGCAAGACGCTTG
CACTCGACAGGAAAGAGAAAATTATGAAAAGAGCAGTTAATGCATTGCCG
TTATTCTATCGTAAAGGTGTCGAACGGCAAGCTGGCAGAAAGAGGGTGCA
TTCTGGGATGCGAGTGCTAGGCCAAGCGAGATGGAGCAAGTACCCGCAGC
AATGGTTGCTGCGGCTTCTTACTTCATTTCGATTGCCTTTGTGCTCCCAT
CCCAAAATGGCGCGTTCATGCTGCCGGCTTGCCGATGGACGCCTTTACGA
GATAATCAAGGGGAGGGGCAACGAGCTCGAGGAAGAAAAAGGCTCCACGC
CGCCAAAAAAAACGTTGCCGTTATGTAGATTGCGACACCGCAAAATACAC
CCCGTTGCCTTTTTTTTAGACTGCGTCACCACAACCGAAAAAATTAACAC
AATAAAAAAATAAAATAAAATAAATAACCACAAACGAAATACTCAAAATA
AGCCCAGTACCCAGTCGGTTTTTTACCATTCATTGTAAAGACTTCAAACA
CATCCCCTTCGACTGTGGCTTTTTCTCGAACGGTTAGTGGCTTTTTCTCG
AACGGGTAGTCTTTCGGTGTTTGTACTTGTATTTTTCTTTAAAAGACACC
CACCCATTTTCGATGGAAATACCCCACCCAACGGCGTGATGGCTTTTCTT
CAAAACCCTCGTGTGTAGAGATATGTGATACATAAGAAATCTTTACCTAC
AAATACTACTTCGTTCGAGATACAGCGAAACGCTGGTATTGCCATCGACT
GGTTGCGTACAACATGAAAGACGAGACTGCCACGGTGTTGGAGAGATGAC
CGACCCCTTGCGCAGGGACACGTGATATACAGGTAACGACCTCTAGTTTT
GGCGTAGACTGGGGGGTATTGGTTCCTCTTTGTGGGCTACAACCCTTAAA
CCCTATCCCTTACCCTAACCCAAACCCTAACCCTAACCCTAACCCTAACC
CTAACCCTAACCCTAAAACCCTATCCCTTACCTAAACCCAAACCCTAACC
TAACTTTAACCAAATGACTGCTGTATAGCAGGTTTTGTTGAAGTCTAGAG
GTCCTTCACGGGGCTCGCAAGCGGTGCTCAAGTTCTTGGGTTTGATAGTA
AAGTGTTGAGCAAGAGCTCTTAACTGCGACCCTAACCCTGGCCTCACTTT
AACCAAATGGCTGCTGTATAGCAGGTTTTGTTGAAGTCTAGAGGTCCTTC
ACCGTGCTAAAGTTCTCGGGTGTGATAGCGAAGTGTTGAGCAAGGAGCCC
TTTCTGCGAGCGCTATGTTTGTTCTTTCAAGTTTTCACCGTTGTTGATGA
AGCAGGTAGTGCCATCGAATGATATCTCGTCCTAATATATACGCATTGCC
ATCGGATGCGTACAAAATCAAAGACAAGACAAGACTCCATTGGTTCGACC
CGTGCGTTGGGGTATGATCTGGTGCCTGCTGTTGTGTCTGTTCATGACGT
CATGGTCACGTCACCCCTGTGGTATACAGTCGTAGGCCCTCTATAAAAGG
CGGGTGCCCTATATAAGAGGCGGGTGAAATTGACTGCCACAGACGGAATA
TGCTATCAAGTTTACCCGCCTTATATATGAGGCGGGTGAAAGCCTTATCA
ATACCCGCCTCATTAGGCGGGTGGGATTGGCTGGCACAGACGGAATATGT
TTTCAAGTTTACCCGCCTTACTATAAGCCGAGTGAAGTAGACAGCATAAT
CAAGTTGTTCTACACAGTGAATAAGACGGCTGGCTGCCCCATATAGGGCG
AGTGAATCGGTCTGGCGCATACCCGCCTTTTGGAGGGCCTACCGCTGTGT
ACACGAACTCTTCCTTCACCGCCATGAGATATTAAGTTTTGCGCCACCGC
TTTCGTGGGACCCTCGATCGCCGGTACAACAGCTGCTGGAGACTTTCCCG
CTGGAGCCTTTGATGAAGAAAGTACAGCCGAAAGGGGTGGGTCTGAGGTG
CGAGATCCACCGTCGCAATGGGGGCCAGGCGATCTCGGAAGGGTGGGAGT
GGGAGGACGCTTGGGATAGGCTTCCGGCTGACATGCGGCTCAAGGTGGCA
GCGATTGACGTTGATGCCCTCGAGGCTGCGATGCACCAGGCGACGTCTAC
CCATAGGTGCGTTGGAATTGAGTCAATGTTGTTGTTGTTGTTGTTGTTGT
TGTTGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12909:31..3086+

>mRNA_E-fasciculatus_F_contig12909.2202.1 ID=mRNA_E-fasciculatus_F_contig12909.2202.1|Name=mRNA_E-fasciculatus_F_contig12909.2202.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12909:31..3086+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTAAGGGGGATGTGCGTCTCCTGGGCAACGGTGATAGCAACGGTGGGTG
CGGGCGTGGGCGGGCCGGCGAAGGGCCGGCATGCGGGGGCGGGCAGAGAT
GCGCGCACCAGCACGCGGCGGCGGCGGCGGCGGCGGCAGCAGAGGTTAGC
GCTGGGCAAGCGGCGGCAAATTCGAGGGGGTTGCCTCCGGCGCTTTGCCT
ACGGGAGGCGTACCTGACGGACAGGGCTCGCTTGGATCAGGGTAAGGGGG
ATGTGCGTCTCCTGGGCAACGGTGATAGCAACGGTGGGTGCGGGCGTGGG
CGGGCCGGCGAAGGGCCGGCATGCGGGGGCGGGCAGAGATGCGCGCACCA
GCACGCGGCGGCGGCGGCGGCGGCGGCAGCAGAGGTTAGCGCTGGGCAAG
CGGCGGCAAATTCGAGGGGGTTGCCTCCGGCGCTTTGCCTACGGGAGGCG
TACCTGACGGACAGGGCTCGCTTGGATCAGCTGCTGGAGACTTTCCCGCT
GGAGCCTTTGATGAAGAAAGTACAGCCGAAAGGGGTGGGTCTGAGGTGCG
AGATCCACCGTCGCAATGGGGGCCAGGCGATCTCGGAAGGGTGGGAGTGG
GAGGACGCTTGGGATAGGCTTCCGGCTGACATGCGGCTCAAGGTGGCAGC
GATTGACGTTGATGCCCTCGAGGCTGCGATGCACCAGGCGACGTCTACCC
ATAGGTGCGTTGGAATTGAGTCAATGTTGTTGTTGTTGTTGTTGTTGTTG
TTGCTGCTGGAGACTTTCCCGCTGGAGCCTTTGATGAAGAAAGTACAGCC
GAAAGGGGTGGGTCTGAGGTGCGAGATCCACCGTCGCAATGGGGGCCAGG
CGATCTCGGAAGGGTGGGAGTGGGAGGACGCTTGGGATAGGCTTCCGGCT
GACATGCGGCTCAAGGTGGCAGCGATTGACGTTGATGCCCTCGAGGCTGC
GATGCACCAGGCGACGTCTACCCATAGGTGCGTTGGAATTGAGTCAATGT
TGTTGTTGTTGTTGTTGTTGTTGTTG
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