mRNA_E-fasciculatus_F_contig12907.2200.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12907.2200.1
Unique NamemRNA_E-fasciculatus_F_contig12907.2200.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12907.2200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12907contigE-fasciculatus_F_contig12907:1447..1924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12907.2200.1prot_E-fasciculatus_F_contig12907.2200.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12907 1463..1792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.6445324-UTR-E-fasciculatus_F_contig12907:1446..14621622927794.6445324-UTR-E-fasciculatus_F_contig12907:1446..1462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12907 1447..1462 +
1695995697.9607763-UTR-E-fasciculatus_F_contig12907:1446..14621695995697.9607763-UTR-E-fasciculatus_F_contig12907:1446..1462Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12907 1447..1462 +
1622927794.6743045-UTR-E-fasciculatus_F_contig12907:1792..19241622927794.6743045-UTR-E-fasciculatus_F_contig12907:1792..1924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12907 1793..1924 +
1695995697.9788659-UTR-E-fasciculatus_F_contig12907:1792..19241695995697.9788659-UTR-E-fasciculatus_F_contig12907:1792..1924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12907 1793..1924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.6563191-CDS-E-fasciculatus_F_contig12907:1462..17921622927794.6563191-CDS-E-fasciculatus_F_contig12907:1462..1792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12907 1463..1792 +
1695995697.9688292-CDS-E-fasciculatus_F_contig12907:1462..17921695995697.9688292-CDS-E-fasciculatus_F_contig12907:1462..1792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12907 1463..1792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12907.2200.1

>prot_E-fasciculatus_F_contig12907.2200.1 ID=prot_E-fasciculatus_F_contig12907.2200.1|Name=mRNA_E-fasciculatus_F_contig12907.2200.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
MCVCGGGGCFGLSLVFPYSPSVDGDAHVRKHEPGIEHVERRCFPRCGYER
KGVLLLSGKLGLFVSPYSYGVVWMETRMCAKHACTHEATTGDVFPEMWVR
YSGAGGLLS*
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mRNA from alignment at E-fasciculatus_F_contig12907:1447..1924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12907.2200.1 ID=mRNA_E-fasciculatus_F_contig12907.2200.1|Name=mRNA_E-fasciculatus_F_contig12907.2200.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=478bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12907:1447..1924+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGTGTTTTCCAAAATATGTGTGTGTGTGGGGGGGGGGGCTGTTTCGGTC
TGAGTCTTGTGTTTCCGTACTCACCCAGCGTTGATGGAGACGCGCATGTG
CGCAAACACGAACCGGGCATCGAGCATGTGGAGCGTCGGTGCTTTCCAAG
ATGTGGGTACGAGAGAAAGGGAGTCTTGCTTCTATCTGGAAAATTGGGGC
TCTTTGTGTCTCCATACTCGTACGGTGTTGTGTGGATGGAGACACGCATG
TGCGCTAAGCACGCATGCACACACGAGGCAACCACGGGGGACGTATTTCC
CGAAATGTGGGTGAGATATTCGGGGGCGGGCGGTCTGCTGTCTTGATCTA
TTGGCACGCTTGCGTCCCTCCCTTACGCCGGGAGTGAGGGTCCCATCACG
CTGTCGGTTCTACTATCTTGGGAGTTCAGTGTTTCTGTCCTCGTCTGGTA
CTGGTCTGTATTGATGCAGACACACGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12907:1447..1924+

>mRNA_E-fasciculatus_F_contig12907.2200.1 ID=mRNA_E-fasciculatus_F_contig12907.2200.1|Name=mRNA_E-fasciculatus_F_contig12907.2200.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12907:1447..1924+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGTGTGTGTGGGGGGGGGGGCTGTTTCGGTCTGAGTCTTGTGTTTCC
GTACTCACCCAGCGTTGATGGAGACGCGCATGTGCGCAAACACGAACCGG
GCATCGAGCATGTGGAGCGTCGGTGCTTTCCAAGATGTGGGTACGAGAGA
AAGGGAGTCTTGCTTCTATCTGGAAAATTGGGGCTCTTTGTGTCTCCATA
CTCGTACGGTGTTGTGTGGATGGAGACACGCATGTGCGCTAAGCACGCAT
GCACACACGAGGCAACCACGGGGGACGTATTTCCCGAAATGTGGGTGAGA
TATTCGGGGGCGGGCGGTCTGCTGTCTTGAATGTGTGTGTGTGGGGGGGG
GGGCTGTTTCGGTCTGAGTCTTGTGTTTCCGTACTCACCCAGCGTTGATG
GAGACGCGCATGTGCGCAAACACGAACCGGGCATCGAGCATGTGGAGCGT
CGGTGCTTTCCAAGATGTGGGTACGAGAGAAAGGGAGTCTTGCTTCTATC
TGGAAAATTGGGGCTCTTTGTGTCTCCATACTCGTACGGTGTTGTGTGGA
TGGAGACACGCATGTGCGCTAAGCACGCATGCACACACGAGGCAACCACG
GGGGACGTATTTCCCGAAATGTGGGTGAGATATTCGGGGGCGGGCGGTCT
GCTGTCTTGA
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