mRNA_E-fasciculatus_F_contig12905.2199.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12905.2199.1
Unique NamemRNA_E-fasciculatus_F_contig12905.2199.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12905.2199.1 vs. uniprot
Match: D7FQC7_ECTSI (Protein tyrosine phosphatase, receptor type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC7_ECTSI)

HSP 1 Score: 431 bits (1109), Expect = 7.190e-135
Identity = 231/262 (88.17%), Postives = 236/262 (90.08%), Query Frame = 1 
Query:    1 SLLCKPQHAAEVFHVDADDDIVVGDTIIFTERLYVDLDGQLLTTGRGTTTTNISTPSQGPHPFYHHHDFPATASGAADRNSPSAPRVSLSMASLG-----------ATRKGGRARGGXXXXARWATAAEKSRTREGGHVGRPSTTAMVVQGGSWTDGGGEFVGERTVASHVLQDSFRSMRRKEKGGVLEYDRTKSRCRMLRLEVIWSTVSSEEAKEFLLPRGSIVERNQGRLSQFETFRALWAQDERRKSVREEWALLSGVL 753
            SLLCKPQHAAEVFHVDADDDIVVGDTIIFTERLYVD DGQL+T G GTTT NI TPSQGP+P  HHH FPA ASGA DRNSPSAPRVSLSMASLG           ATRKGGRARGGXX  ARWAT AEKSRTR+GGHVGRP TTAMVVQGGSWTDGGGEFVGERTVASHVLQDSFRSMRRK+KGGVLEYDRTKSRCR+LRLEVIWSTVSSEEAK FLLPRGSIVERNQGRLSQFETFRALWAQDERRKSVREEWALLSGVL
Sbjct: 1606 SLLCKPQHAAEVFHVDADDDIVVGDTIIFTERLYVDQDGQLVTAGGGTTTNNIPTPSQGPYPSRHHHGFPANASGAVDRNSPSAPRVSLSMASLGLDGAAPDNATGATRKGGRARGGXXGGARWATPAEKSRTRQGGHVGRPPTTAMVVQGGSWTDGGGEFVGERTVASHVLQDSFRSMRRKDKGGVLEYDRTKSRCRVLRLEVIWSTVSSEEAKGFLLPRGSIVERNQGRLSQFETFRALWAQDERRKSVREEWALLSGVL 1867
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BLAST of mRNA_E-fasciculatus_F_contig12905.2199.1 vs. uniprot
Match: A0A835ZF47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF47_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 9.620e-19
Identity = 88/275 (32.00%), Postives = 110/275 (40.00%), Query Frame = 1 
Query:   13 KPQHAAEVFHVDADDDIVVGDTIIFTERLYVDLDGQLLTTGRGTTTTNISTPSQGPHPFYHHHDFPATASGAADRNSPSAPRVSLSMASLGATRKGGRARGGXXXXARWATAAEKSRTREGGHVGRPSTTAMVVQGGSWTDGGGEFVGERTVASHVLQDSFRSMRRK-------------------EKGGVLEYDRTKSRCRMLRLEVIW-------------STVSSEEAKEFLLPRGSIVERNQGRLSQFETFRALWAQDERRKSVREEWALL 741
            KP  AAE F VD + DI VGDTIIFTERLY+D                                   T  G+         R+ LS+AS  ++  GG                                             GGEF+GERTVA+HV++DS+ SM+R+                      G   Y R     R LRLEV+W             STVS  EA  FLL +G I+ER + R++QFETFRA W  + +RK V  EW LL
Sbjct: 1146 KPALAAEQFPVDCNGDIAVGDTIIFTERLYID----------------------------------GTEFGSG--------RLHLSVASSASSMAGG---------------------------------------------GGEFIGERTVAAHVIKDSYLSMKRRGSAAGIGSSAQASGAALLAASSGSAAYGRAAG-TRTLRLEVLWAAXXXXXXXXXXXSTVSRREADRFLLTKGHIIERREKRIAQFETFRAAWRDEPQRKPVATEWELL 1332
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BLAST of mRNA_E-fasciculatus_F_contig12905.2199.1 vs. uniprot
Match: A0A7S2G9T5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9T5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.280e-15
Identity = 76/239 (31.80%), Postives = 109/239 (45.61%), Query Frame = 1 
Query:   13 KPQHAAEVFHVDADDDIVVGDTIIFTERLYVDLDGQLLTTGRGTTTTNISTPSQGPHPFYHHHDFPATASGAADRNSPSAPRVSLSMASLGATRKGGRARGGXXXXARWATAAEKSRTREGGHVGRPSTTAMVVQGGSWTDGGGEFVGERTVASHVLQDSFRSMRRKEKGGVLEYDRTKSRCRMLRLEVIWSTVSSEEAKEFLLPRGSIVERNQGRLSQFETFRALWAQDERRKSVREE 729
            +P++A E F ++   D+VVGDTI+FTERLY+  DG+LLT+      T                                         SLGA                       S ++    +GR                   +VGERT+A+ VL+D +RS R   + GV +     SR RMLRLEVIWSTVS+EEA + +L R +I++ ++ ++ +FETFR  WA++E R    EE
Sbjct: 1516 QPKNADEFFTIECTGDVVVGDTILFTERLYIGRDGKLLTSSNPLAFTR----------------------------------------SLGA-----------------------SGSKPESRLGR-------------------YVGERTIAASVLKDIYRSPRHTIEVGVAK---PISR-RMLRLEVIWSTVSTEEACDHVLRRDAIIQMDEEQIFEFETFRVPWAEEEARLPEYEE 1668
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BLAST of mRNA_E-fasciculatus_F_contig12905.2199.1 vs. uniprot
Match: A0A7S0SYB2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SYB2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.860e-8
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:  445 EFVGERTVASHVLQDSFRSMRRKEKGGVLEYDR-----TKSRCRMLRLEVIWSTVSSEEAKEFLLPRGSIVERNQGRLSQFETFRALWAQDERRKSVREEWALL 741
            E++GERT+A+H+++D+++++R       L  DR     + S  R++ LEVIW   S   A++F    G I+ER    L +FE +R LW Q+++R  + +EW LL
Sbjct:  214 EYLGERTIAAHIVKDNYKTVR----DTCLATDRPINSISSSNYRIVWLEVIW-VQSKLNAEQFKYKTGEIIERKLKNLQEFEIYRCLWYQEKQRMRLEDEWELL 312
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BLAST of mRNA_E-fasciculatus_F_contig12905.2199.1 vs. uniprot
Match: A0A7S3Y2L0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2L0_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 4.210e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SLLCKPQHAAEVFHVDADDDIVVGDTIIFTERLYVDLDGQLLTTGR 138
            S L +P +AAE F ++   D+VVGDTI+FTERL+VD  G+LL   R
Sbjct:   16 SALLRPGNAAETFTIECTGDVVVGDTILFTERLFVDAGGRLLNNAR 61
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12905.2199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FQC7_ECTSI7.190e-13588.17Protein tyrosine phosphatase, receptor type n=1 Ta... [more]
A0A835ZF47_9STRA9.620e-1932.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2G9T5_9STRA7.280e-1531.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0SYB2_9STRA1.860e-836.54Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3Y2L0_HETAK4.210e-554.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12905contigE-fasciculatus_F_contig12905:698..3331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.9
Seed ortholog evalue1.5e-75
Seed eggNOG ortholog2880.D7FQC7
EggNOG free text desc.EF-hand domain pair
EggNOG OGs29989@1,2RG9Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1020
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12905.2199.1prot_E-fasciculatus_F_contig12905.2199.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12905 962..2542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.529734-UTR-E-fasciculatus_F_contig12905:697..9611622927794.529734-UTR-E-fasciculatus_F_contig12905:697..961Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12905 698..961 -
1695995697.8898427-UTR-E-fasciculatus_F_contig12905:697..9611695995697.8898427-UTR-E-fasciculatus_F_contig12905:697..961Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12905 698..961 -
1622927794.5858831-UTR-E-fasciculatus_F_contig12905:2542..27791622927794.5858831-UTR-E-fasciculatus_F_contig12905:2542..2779Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12905 2543..2779 -
1695995697.94049-UTR-E-fasciculatus_F_contig12905:2542..27791695995697.94049-UTR-E-fasciculatus_F_contig12905:2542..2779Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12905 2543..2779 -
1622927794.5964408-UTR-E-fasciculatus_F_contig12905:3298..33311622927794.5964408-UTR-E-fasciculatus_F_contig12905:3298..3331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12905 3299..3331 -
1695995697.9523935-UTR-E-fasciculatus_F_contig12905:3298..33311695995697.9523935-UTR-E-fasciculatus_F_contig12905:3298..3331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12905 3299..3331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.54569-CDS-E-fasciculatus_F_contig12905:961..11751622927794.54569-CDS-E-fasciculatus_F_contig12905:961..1175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12905 962..1175 -
1695995697.9034069-CDS-E-fasciculatus_F_contig12905:961..11751695995697.9034069-CDS-E-fasciculatus_F_contig12905:961..1175Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12905 962..1175 -
1622927794.5596511-CDS-E-fasciculatus_F_contig12905:2237..24961622927794.5596511-CDS-E-fasciculatus_F_contig12905:2237..2496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12905 2238..2496 -
1695995697.9193823-CDS-E-fasciculatus_F_contig12905:2237..24961695995697.9193823-CDS-E-fasciculatus_F_contig12905:2237..2496Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12905 2238..2496 -
1622927794.5726347-CDS-E-fasciculatus_F_contig12905:2529..25421622927794.5726347-CDS-E-fasciculatus_F_contig12905:2529..2542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12905 2530..2542 -
1695995697.931878-CDS-E-fasciculatus_F_contig12905:2529..25421695995697.931878-CDS-E-fasciculatus_F_contig12905:2529..2542Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12905 2530..2542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12905.2199.1

>prot_E-fasciculatus_F_contig12905.2199.1 ID=prot_E-fasciculatus_F_contig12905.2199.1|Name=mRNA_E-fasciculatus_F_contig12905.2199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=162bp
MASLGATRKGGRARGGGGGGARWATAAEKSRTREGGHVGRPSTTAMVVQG
GSWTDGGGEFVGERTVASHVLQDSFRSMRRKEKGGVLEYDRTKSRCRMLR
LEVIWSTVSSEEAKEFLLPRGSIVERNQGRLSQFETFRALWAQDERRKSV
REEWALLSGVL*
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mRNA from alignment at E-fasciculatus_F_contig12905:698..3331-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12905.2199.1 ID=mRNA_E-fasciculatus_F_contig12905.2199.1|Name=mRNA_E-fasciculatus_F_contig12905.2199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2634bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12905:698..3331- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTCTCCTGTGCAAGCCCCAGCACGCCGCCGAGGTGGGAGATTGTAGTTC
TAATTTCGTTTCGTCAGAGTGATCGAGAGGTTGCAGGTGTCGGATGTCGT
AGGGTGCAACGAAGAGATACGCGCAGGAGATAGCAGCAGTCAACAGTGTA
GCCATGTTTTGCCGACACCCTTGTGCATCAGGGACTGATGCTGATGCTGG
CGCGTTTGGAAGAGTGGATCTTCAACTGTGGGACTATCCATGAGCAACGT
CCCCGTTGGTGAAGTGGTAGAGTCCGAGGGCCTCTGGTTGGCAAGGTGTC
TGTCTAAACTACCAACGTGTGCAAATGTCCTTCCGGCTGAATCGACGCTC
AGCATGGTCTCACAAAGAGGGCATCGTCCCGCATACCCATGCTACGACAA
CAAATATACCCGATCTATTTGCAGTACTGGCAAGACACGCAAGAGCTTCG
CAGTGTGATGAATCTTAAGAGCTCCTGACTGTCGGTGTCTGTATGAGGAG
GAATTCAATGGTCCCCCCCCCGCTCCCCTCCCATCCCACCCCACCCCCAA
AGGTTTTCCACGTGGATGCGGACGACGATATAGTCGTCGGCGACACGATA
ATATTCACCGAGCGCCTGTACGTCGACTTAGACGGGCAACTCCTCACCAC
AGGACGGGGCACCACCACCACCAACATCTCGACGCCTTCGCAAGGCCCTC
ACCCCTTCTACCACCACCATGACTTCCCGGCAACCGCCTCGGGGGCCGCC
GACCGAAACTCTCCCTCGGCCCCGCGCGTAAGCTTGAGCATGGCCAGCCT
TGGTCTCGACGGCGCTGCTCCTGACAACGCAACAGGAGCCACAAGAAAGG
GAGGAAGGGCAAGAGGAGGAGGAGGAGGAGGAGCAAGATGGGCGACCGCC
GCGGAAAAGAGTCGTACGCGGGAAGGTGGGCACGTGGGACGGCCGTCAAC
GACGGCGATGGTGGTGCAGGGAGGCTCGTGGACTGACGGCGGCGGGGAGT
TCGTCGGGGAGAGAACGGTGGCGTCGCATGTGCTGCAGGACTCGTTCCGG
TCGATGAGGAGGAAAGAGAAAGGAGGCGTGTTGGAGTACGACAGGTAAAC
GGGAAAAAAAGGGTTCGAGGGATGAGGTTGTTGCATCGATGAGGAGCTCT
AGAATACGAAGATAGGAGTGGGGTGGGGTGTGCGAGCGTGCGTTGAGAGC
TTTCGCGTTTTCGTTCCCACCTTCCTATGAGAAAACGATAGCGCTTCCTC
ATGGCACGCAGCCGAGGATTATAAATTTGCAGATCACAAACGTAAAGCTA
CACTTTGTTACCTCTTGCGACTAAGTAGTGGAGATGGGAGAGAGTTACCA
ATACAAGTAAATCCACCGAAATCGTCCCTCGTCACGGAAACGCCTCCCCC
CTCAGAAAAACGGACGATCATCAACTGTTGGGAACTCCCCAGAGTGGGCT
TTAATATCTATTGGTCGTACAACGGGATGTTACCAGAAAATCCTGCCCAA
AATTCTAAAAAACGTCTGCGTTGCTGGTGCTGCTACTGTGGTTGTCGACA
AGACATGAGTTGTATTGCACGGTCTGCCGGTGCGCGGCGCCAAAATGCCG
TCCGTTACCGCAAGAGTTGCAGAGAACCAAGCGATTCTCTTGCTCTTGCC
CATTTACAGCTGCTTGACCGGCCAGACAGTGGGGCACTATAGTCAATGAG
CGGTGTCGAAAGGCGCAAGCTTCCCAAGCTGCCCTTCTTTGCTTCTTGAA
GGAGTTTTCGTAGATGATTTTTGGGCCTAGCGACACGAGTTCCAGCGTGA
AAGGCCTGAGGTATACTGTCTCTGTGTCCGGGTGTATTTTGTACGCCTCT
CTGCCCTGGAGAAGGGACTTAGGCAATTTTTTCATCCAAACGTTTTCATG
CTCCCCCGGAGGGGTTCTCGAAGGATACGACGGTGTAGTTGCCATGAAAA
GGAGGTAAGTCAGCCCAAAAAATTGTAGAGGTATAATTTTGTCACGTCCT
CACACCCCCGCTCCCGCGCGTTATCGCGTTCTCTTTCCCTCAAGGCGTCA
TCGTTGCCGATATCTTGTTATCAAGCCTGTCCTCAATCGCGCTCCATATC
GTCCGCCGCTCTGATACAAACAAACCGCCACACCCAAACCCCGGATTCCC
TTCCAGAACAAAGAGTCGATGTCGGATGCTGCGGTTGGAGGTGATCTGGT
CCACGGTTTCAAGCGAGGAGGCGAAGGAGTTTCTGCTCCCGCGCGGGTCG
ATAGTAGAGCGCAACCAGGGGCGACTCTCGCAGTTCGAGACTTTCCGAGC
TCTCTGGGCGCAGGACGAGAGGCGAAAGAGCGTCCGAGAAGAATGGGCTC
TTCTCTCTGGCGTGTTGTGAAGAAGATAGGTCTTGATAGCCTCGTTCTCA
GTGCCCGAGTCAGGGAAAAGTTGTGACGTTGCTTACTGTACTGTTGAGAA
CCGCCAAGGTGTAAAGACTCTTTTTCCAGCCAAACGTTTGGGGGGGGCTG
GCGATGGCCATATCTACTTTCGAGTTTCCGCCGTGAAGTTAACAGGTTTT
GCATCTGCTTTGGGTACAGTTGCTTTTGCCGGATAAATAAGATTTCATCT
GATTGGAGGCTATGATAGATGAGAAAAAGGACGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12905:698..3331-

>mRNA_E-fasciculatus_F_contig12905.2199.1 ID=mRNA_E-fasciculatus_F_contig12905.2199.1|Name=mRNA_E-fasciculatus_F_contig12905.2199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12905:698..3331- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCAGCCTTGATGGCCAGCCTTGGAGCCACAAGAAAGGGAGGAAGGG
CAAGAGGAGGAGGAGGAGGAGGAGCAAGATGGGCGACCGCCGCGGAAAAG
AGTCGTACGCGGGAAGGTGGGCACGTGGGACGGCCGTCAACGACGGCGAT
GGTGGTGCAGGGAGGCTCGTGGACTGACGGCGGCGGGGAGTTCGTCGGGG
AGAGAACGGTGGCGTCGCATGTGCTGCAGGACTCGTTCCGGTCGATGAGG
AGGAAAGAGAAAGGAGGCGTGTTGGAGTACGACAGGAGCCACAAGAAAGG
GAGGAAGGGCAAGAGGAGGAGGAGGAGGAGGAGCAAGATGGGCGACCGCC
GCGGAAAAGAGTCGTACGCGGGAAGGTGGGCACGTGGGACGGCCGTCAAC
GACGGCGATGGTGGTGCAGGGAGGCTCGTGGACTGACGGCGGCGGGGAGT
TCGTCGGGGAGAGAACGGTGGCGTCGCATGTGCTGCAGGACTCGTTCCGG
TCGATGAGGAGGAAAGAGAAAGGAGGCGTGTTGGAGTACGACAGAACAAA
GAGTCGATGTCGGATGCTGCGGTTGGAGGTGATCTGGTCCACGGTTTCAA
GCGAGGAGGCGAAGGAGTTTCTGCTCCCGCGCGGGTCGATAGTAGAGCGC
AACCAGGGGCGACTCTCGCAGTTCGAGACTTTCCGAGCTCTCTGGGCGCA
GGACGAGAGGCGAAAGAGCGTCCGAGAAGAATGGGCTCTTCTCTCTGGCG
TGTTGTGAAACAAAGAGTCGATGTCGGATGCTGCGGTTGGAGGTGATCTG
GTCCACGGTTTCAAGCGAGGAGGCGAAGGAGTTTCTGCTCCCGCGCGGGT
CGATAGTAGAGCGCAACCAGGGGCGACTCTCGCAGTTCGAGACTTTCCGA
GCTCTCTGGGCGCAGGACGAGAGGCGAAAGAGCGTCCGAGAAGAATGGGC
TCTTCTCTCTGGCGTGTTGTGA
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