mRNA_E-fasciculatus_F_contig12902.2197.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI) HSP 1 Score: 518 bits (1333), Expect = 6.980e-180 Identity = 292/301 (97.01%), Postives = 296/301 (98.34%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVEPEADMDTIAQAVSEVSVADKPPAXXXXXXXXXXXXXXXXXXXXXXXXXXEASGDSAKPSDGQTFKPDTHAVDVTVALGQHGLGLVLGKEEEGSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI 903
DQKAVAATTIVWKDTVTLGT+DAPK+TAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVEPE DMDTI QAVSEVSVADKP XXXXXXXXXXXXXXXXXXXXXXXXXXEASGDSAKPS+GQTFKPDTHAVDVTV+LGQHGLGLVLGKEE GSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI
Sbjct: 287 DQKAVAATTIVWKDTVTLGTDDAPKKTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVEPEVDMDTIVQAVSEVSVADKP--XXXXXXXXXXXXXXXXXXXXXXXXXXEASGDSAKPSEGQTFKPDTHAVDVTVSLGQHGLGLVLGKEEAGSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI 585
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE) HSP 1 Score: 385 bits (989), Expect = 1.330e-127 Identity = 206/308 (66.88%), Postives = 231/308 (75.00%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVEPEAD-MDTIAQAVSEVSVADKPPAXXXXXXXXXXXXXXXXXXXXXXXXXXEASGDSAKPSDGQTFKPDT-----HAVDVTVALGQHGLGLVLGKEEEGSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQ-DEITI 903
DQKAVA TTIVWKDTVTLGT+DAPK+TAALYA DAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRL+EYTPAPVRVYG+FAV+AGTYTFAW+GDDG TVEKRARFSFTFRR KPGSP+PWTIVEHHSSSMP APAELK VEPE D +D +AQAV+++S + S P GQ T H+VDVT +G GLGLVLGKEE+G+RW V GFR MPDG+PNPA A GIEVGDTLQ++ GV LG+YK+G+E+FKK G VV+TV RQ DEI I
Sbjct: 322 DQKAVAETTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKRARFSFTFRRGKPGSPRPWTIVEHHSSSMPDAPAELKHVEPEDDGIDYVAQAVADLSATSSVSSSTLPP--------------------------SPPPRKGQAMAAFTEDVNHHSVDVTANVGSCGLGLVLGKEEQGTRWVVNGFRSMPDGKPNPAEAAGIEVGDTLQRVGGVPLGTYKEGIELFKKLRGPVVLTVCRQNDEILI 603
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI) HSP 1 Score: 373 bits (958), Expect = 5.370e-123 Identity = 207/307 (67.43%), Postives = 237/307 (77.20%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVE--PEADMD-TIAQAVSEVSVADKPPAXXXXXXXXXXXXXXXXXXXXXXXXXXEASG---DSAKPSDGQTFKPDTHAVDVTVALGQHGLGLVLGKEEEGSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI 903
+ KA + TTIVWKDTVTLGTEDAPK+T+ALY DAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEY+PAP RVYGQFAV+AGTYTFAWQG+D +TVEKRARFSFTFRRD P SP PWTIVEHHSSSMP APA LK VE P A MD + + V A++P XXXXXX XXXXX E + D + D + F P TH VDVT+ +G +GLG++LG+E+EG+RW VKGFR+MPDG PA G+EVGDTLQKL+GV LGSYK+GM MFKKQ+GS +T+LRQDEITI
Sbjct: 292 EMKAGSETTIVWKDTVTLGTEDAPKKTSALYPEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYSPAPARVYGQFAVQAGTYTFAWQGNDDETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPAGLKRVENDPAAVMDEVVVEDAPAVVAAEEPXXXXXXXXAEAEPDVVXXXXXAAEEPASEEAEEVPDFSVVPDEEPFVPPTHPVDVTITVGSNGLGVILGEEKEGTRWTVKGFRNMPDGDKGPAEVAGVEVGDTLQKLEGVILGSYKEGMAMFKKQTGSFSLTILRQDEITI 598
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE) HSP 1 Score: 384 bits (987), Expect = 6.530e-119 Identity = 227/314 (72.29%), Postives = 246/314 (78.34%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPVE--PEADMDTI----AQAVSEVS-------VADKPPAXXXXXXXXXXXXXXXXXXXXXXXXXXEASGDSAKPSDGQTFKPDTHAVDVTVALGQHGLGLVLGKEEEGSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI 903
D KAV+ TTIVWK+TVTLGTEDAPK+TAALYA DAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAP RVYGQFAV+AGTYTFAWQG+DG+TVEKRARFSFTFRRD P SP PWTIVEHHSSSMP AP LK VE P A MD + A AV VAD+P A XXXXXXXXXXXXXXXX E S P D + F P TH VDVTV +G HGLGLVLG+E+EG+RW VKGFR+MPDG PA G+EVGDTLQKL+GV LGSYK+GM MFKKQ+GS +TVLRQDEITI
Sbjct: 1417 DMKAVSETTIVWKNTVTLGTEDAPKKTAALYAEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPARVYGQFAVQAGTYTFAWQGNDGETVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPSAPDGLKRVENDPAAVMDDVVVEEAPAVVAAEEPEEPAVVADEPAAEAEPDVVXXXXXXXXXXXXXXXX---EVPDFSVVP-DEEPFVPTTHPVDVTVTVGSHGLGLVLGEEKEGTRWTVKGFRNMPDGDKGPAEVAGVEVGDTLQKLEGVVLGSYKEGMAMFKKQTGSFSLTVLRQDEITI 1726
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE) HSP 1 Score: 277 bits (708), Expect = 3.540e-87 Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPV 423
DQKAVAATTIVWKDTVTLGT+DAPK+TAALYA DAVLWGTVSEEVRETPEQIYDYFDFFARLPKLR+VEYTPAPVRVYG+FAVEAGTYTFAWQG+DGKTVEKRARFSFTFRR KPGSPQPWTIVEHHSSSMPIAPAELKPV
Sbjct: 293 DQKAVAATTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRVVEYTPAPVRVYGEFAVEAGTYTFAWQGEDGKTVEKRARFSFTFRRGKPGSPQPWTIVEHHSSSMPIAPAELKPV 433
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: A0A6H5JTS4_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTS4_9PHAE) HSP 1 Score: 260 bits (665), Expect = 2.020e-78 Identity = 197/465 (42.37%), Postives = 233/465 (50.11%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGT------------VSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELK---------------------------------------------------------------------------------PV----------------------------EPEADMDTIAQAVSEVSVADKP------------PAXXXXXXXXXXXXXXXXXXXXXXXXXXEASGDSAKPSDGQT-----------FKPDTHAV------------------------DVTVALGQHGLGLVLGKEEEGSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQD 891
+ ++V+ TT+ W +TVT GT DAPKRTA LYA DA+LWGT VSE VR+TPEQIY YFD+FARLP+L++VEYTPAPVRVYG FA +AG+YTF+WQG DG TVE RARFSFTFRR P SPQPWTIVEHHSSSMP +P EL+ P+ PEA T + + A++ A XXXXXXXXXXXXXXXXXXXXX E G A S QT + + AV D+T +G GLGL+LG+E+EG+RW VKGFR MPDG+PNPA A GIEVGDTLQKL GV LGSYKDG+E+FKKQ G VV+T+ RQ+
Sbjct: 208 ETRSVSETTLAWTETVTRGTYDAPKRTAELYAPDAILWGTEVCGXXXXXXXTVSETVRDTPEQIYAYFDYFARLPELKVVEYTPAPVRVYGDFAAQAGSYTFSWQGTDGSTVEMRARFSFTFRRAGPSSPQPWTIVEHHSSSMPTSPLELELNRVGLNTNLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASRSPIWSGLFRAFTSSAASAASSDQPAAASVASAPEAKTMTAEEEAEDARAAEQARAEIXXXXXXXXXARERSXXXXXXXXXXXXXXXXXXXXXAETKGGRASSSGLQTPPAPESEHHEEVRASSSAVSSSAVARELSFDGTGAGKDKAKIHDITATVGPLGLGLMLGEEKEGTRWVVKGFRVMPDGKPNPAEAAGIEVGDTLQKLGGVPLGSYKDGIEIFKKQRGPVVLTISRQN 672
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE) HSP 1 Score: 229 bits (583), Expect = 5.920e-68 Identity = 111/140 (79.29%), Postives = 121/140 (86.43%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKP 420
DQKAVAAT +VWKDTVT+GT+D P++TA LYA DA LWGTVSEEVR+TPEQIY YFD+FARLP LRLVEYTP VRVYG FAV+AGTYTF+WQ +DG TVEKRARFSFTFRRD P PQ W IVEHHSSSMP APA LKP
Sbjct: 186 DQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGTTVEKRARFSFTFRRD-PSKPQQWAIVEHHSSSMPTAPAGLKP 324
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI) HSP 1 Score: 230 bits (586), Expect = 4.910e-67 Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPV 423
D++AVA TT++WKDTVT GT DAPK+TAALYA D LWGTVSEEVR+TP+QIY YFD+FARLP+LR+VEYTP VRVYG FAV+AGTYTF+WQ DDG VEKRARFSFTFRRD PG+ +PWTIVEHHSSSMP APA LK V
Sbjct: 172 DRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGAIVEKRARFSFTFRRDNPGTERPWTIVEHHSSSMPTAPAGLKAV 312
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE) HSP 1 Score: 208 bits (529), Expect = 5.490e-63 Identity = 102/141 (72.34%), Postives = 114/141 (80.85%), Query Frame = 1
Query: 1 DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKRARFSFTFRRDKPGSPQPWTIVEHHSSSMPIAPAELKPV 423
D+K V TTI WK+ VTLGT DAP++TA LYA D VLWGTVSEEVR+TPE+IYDYFD+FARLP LRL E+TP +RVYG FA EAGTYTF WQG+DG EKRARFSFTFR D P SP WTIVEHHSSSMP +P +LK V
Sbjct: 103 DRKGVEQTTIRWKEMVTLGTPDAPRKTADLYAVDGVLWGTVSEEVRDTPEEIYDYFDYFARLPNLRLSEFTPVSLRVYGDFATEAGTYTFKWQGEDGVPKEKRARFSFTFRSD-PESPTSWTIVEHHSSSMPTSPLQLKHV 242
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Match: A0A6H5JTG7_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG7_9PHAE) HSP 1 Score: 195 bits (496), Expect = 5.660e-60 Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1
Query: 610 QTFKPDTHAVDVTVALGQHGLGLVLGKEEEGSRWAVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI 903
QTFKPDTHAVDVTVALGQHGLGLVLGKEE GSRW VKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI
Sbjct: 5 QTFKPDTHAVDVTVALGQHGLGLVLGKEEAGSRWVVKGFRDMPDGQPNPASAGGIEVGDTLQKLDGVTLGSYKDGMEMFKKQSGSVVITVLRQDEITI 102 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12902.2197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12902.2197.1 >prot_E-fasciculatus_F_contig12902.2197.1 ID=prot_E-fasciculatus_F_contig12902.2197.1|Name=mRNA_E-fasciculatus_F_contig12902.2197.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=302bp DQKAVAATTIVWKDTVTLGTEDAPKRTAALYAADAVLWGTVSEEVRETPEback to top mRNA from alignment at E-fasciculatus_F_contig12902:502..3619- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12902.2197.1 ID=mRNA_E-fasciculatus_F_contig12902.2197.1|Name=mRNA_E-fasciculatus_F_contig12902.2197.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3118bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12902:502..3619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12902:502..3619- >mRNA_E-fasciculatus_F_contig12902.2197.1 ID=mRNA_E-fasciculatus_F_contig12902.2197.1|Name=mRNA_E-fasciculatus_F_contig12902.2197.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1812bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12902:502..3619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |