mRNA_E-fasciculatus_F_contig1290.2193.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1290.2193.1
Unique NamemRNA_E-fasciculatus_F_contig1290.2193.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1290.2193.1 vs. uniprot
Match: A0A6H5KNZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ3_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 2.830e-114
Identity = 218/264 (82.58%), Postives = 227/264 (85.98%), Query Frame = 1 
Query:    1 SRREANGAWELLGRAEALPEERIFSAAKQAKSGGGGANKDRAKDFTEAYKYLHALGDVFSKVVEAMSEVGRREEECRLVERETEKMLSRQGGNTRFQQLLTRDLERVKGDAFALEQRLDQALEEERLNQKASQEQASHEQETQEPFGEAQDVTRRD--DIADDVVTEQDEQASYGDDTGGHVQDDEDGAEQQGLPFRAQGHGNAAESTLDEEFQNERSAMVGGGEERGEGEAPEQRGIGAGGDDVESDQEADFVGEDEEDNVWQ 786
            SRREANGAWELLGRAEALPEERIFSAAKQAKSG GG NKDRAKD TEAYK+LHALG+VFSK+VEAMSEVGRREEECR VERETEKMLSRQGGN R Q LLTRDLERVKGDAFALEQRLDQALEEERLNQKAS       QETQ+ FG AQDVTRRD  D A++ V EQDEQAS G+DT G VQDD+D AEQQ LP RAQ HG AAESTLD E Q+ERSA   GGEERGEGEAPEQRG GAGGD VESDQEADFVGEDE DNVWQ
Sbjct:  979 SRREANGAWELLGRAEALPEERIFSAAKQAKSGSGGTNKDRAKDLTEAYKHLHALGEVFSKIVEAMSEVGRREEECRSVERETEKMLSRQGGNVRLQ-LLTRDLERVKGDAFALEQRLDQALEEERLNQKAS-------QETQDSFGAAQDVTRRDSDDNANEAVVEQDEQASCGNDTCGEVQDDDDDAEQQDLPLRAQEHGKAAESTLDVEVQDERSAA--GGEERGEGEAPEQRGSGAGGDVVESDQEADFVGEDEVDNVWQ 1232
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1290.2193.1 vs. uniprot
Match: D7FJ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ88_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 6.420e-112
Identity = 214/264 (81.06%), Postives = 225/264 (85.23%), Query Frame = 1 
Query:    1 SRREANGAWELLGRAEALPEERIFSAAKQAKSGGGGANKDRAKDFTEAYKYLHALGDVFSKVVEAMSEVGRREEECRLVERETEKMLSRQGGNTRFQQLLTRDLERVKGDAFALEQRLDQALEEERLNQKASQEQASHEQETQEPFGEAQDVTRRD--DIADDVVTEQDEQASYGDDTGGHVQDDEDGAEQQGLPFRAQGHGNAAESTLDEEFQNERSAMVGGGEERGEGEAPEQRGIGAGGDDVESDQEADFVGEDEEDNVWQ 786
            SRREANGAWELLGRAEALPEERIFSAAKQAKSGGGGANKDRAKDFTEAYK+LHALG+VFSKVVEA+SEVGRREEECRLVERETEKMLSRQGG+ R Q LLTRDLERVKGDAFALEQRLDQALEEERLNQKASQE     QETQE FGEA+DV RRD  D A++ V EQDEQASYGDDTGG V      AEQQ LP RAQ HG AAEST D E ++ERS + GGGEERGEG+AP       GGD VESDQEADFVGEDEEDNVWQ
Sbjct:  754 SRREANGAWELLGRAEALPEERIFSAAKQAKSGGGGANKDRAKDFTEAYKHLHALGEVFSKVVEAISEVGRREEECRLVERETEKMLSRQGGSVRLQ-LLTRDLERVKGDAFALEQRLDQALEEERLNQKASQE-----QETQESFGEARDVARRDSDDNANEAVEEQDEQASYGDDTGGEVXXXXXXAEQQDLPSRAQEHGEAAESTPDVELEDERS-VSGGGEERGEGDAPXXXXXXXGGDVVESDQEADFVGEDEEDNVWQ 1010
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1290.2193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNZ3_9PHAE2.830e-11482.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ88_ECTSI6.420e-11281.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1290contigE-fasciculatus_F_contig1290:16442..18922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size789
Cds size789
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1290.2193.1prot_E-fasciculatus_F_contig1290.2193.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1290 16442..18922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927793.935188-CDS-E-fasciculatus_F_contig1290:16441..169391622927793.935188-CDS-E-fasciculatus_F_contig1290:16441..16939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 16442..16939 -
1695995697.6411724-CDS-E-fasciculatus_F_contig1290:16441..169391695995697.6411724-CDS-E-fasciculatus_F_contig1290:16441..16939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 16442..16939 -
1622927793.9521942-CDS-E-fasciculatus_F_contig1290:18200..183421622927793.9521942-CDS-E-fasciculatus_F_contig1290:18200..18342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 18201..18342 -
1695995697.6510735-CDS-E-fasciculatus_F_contig1290:18200..183421695995697.6510735-CDS-E-fasciculatus_F_contig1290:18200..18342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 18201..18342 -
1622927794.0285547-CDS-E-fasciculatus_F_contig1290:18773..189221622927794.0285547-CDS-E-fasciculatus_F_contig1290:18773..18922Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 18774..18922 -
1695995697.6592543-CDS-E-fasciculatus_F_contig1290:18773..189221695995697.6592543-CDS-E-fasciculatus_F_contig1290:18773..18922Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 18774..18922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1290.2193.1

>prot_E-fasciculatus_F_contig1290.2193.1 ID=prot_E-fasciculatus_F_contig1290.2193.1|Name=mRNA_E-fasciculatus_F_contig1290.2193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=263bp
SRREANGAWELLGRAEALPEERIFSAAKQAKSGGGGANKDRAKDFTEAYK
YLHALGDVFSKVVEAMSEVGRREEECRLVERETEKMLSRQGGNTRFQQLL
TRDLERVKGDAFALEQRLDQALEEERLNQKASQEQASHEQETQEPFGEAQ
DVTRRDDIADDVVTEQDEQASYGDDTGGHVQDDEDGAEQQGLPFRAQGHG
NAAESTLDEEFQNERSAMVGGGEERGEGEAPEQRGIGAGGDDVESDQEAD
FVGEDEEDNVWQ*
back to top

mRNA from alignment at E-fasciculatus_F_contig1290:16442..18922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1290.2193.1 ID=mRNA_E-fasciculatus_F_contig1290.2193.1|Name=mRNA_E-fasciculatus_F_contig1290.2193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2481bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1290:16442..18922- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCGCAGGGAGGCCAACGGCGCCTGGGAGTTGCTGGGGAGGGCGGAGGC
GTTGCCGGAGGAGAGGATATTCTCGGCCGCGAAGCAGGCCAAGTCCGGGG
GTGGCGGGGCCAACAAGGACCGCGCGAAGGACTTCACGGAAGCGTACAAG
TGAGATAGAGGGAAAAGAGAAAACAGTTGGGACAGAGGGAGGTTGTAACA
AGACGCAGGAGTTGGCGTGTAAGTTTTTTTTTTTCCCGCGTTTTTTTATT
GGTTGGTTCTACATGGACGAAAAGAAAGCTGTAGATTCCACAGATTGTGT
GTTTTTCGTGTGTCGCGCAAGCATCATTGTGGTGTTGCCGCTGGCCCAGT
CAGCGGTTATTCCCGTTCCACGCAGTATGATCGTTAGAAGAGAGAGTCAG
GGGTGCACATAAGCGAAACGGTTTCATGGGTGAATAATTTAGTGCCCAAG
AGGTGCCCCCGCCTATCTTCTACTTTTTTTTTTTCGTGGTCCCTTCTTGG
TGCTTCTAACACGGACGTGAACACATTACGTCGTACACGCTGCTCCTAAC
TCCGTGCCCATCAATGCCGTACAACCCCAGGTACCTGCACGCGCTGGGGG
ACGTTTTCTCTAAGGTCGTGGAGGCGATGTCTGAGGTCGGCAGGCGGGAA
GAAGAGTGCCGGTTGGTGGAGCGCGAAACCGAAAAAATGCTGTCTCGCCA
AGGAGGAAACACCCGCTTTCAGGTACCTAGTCCGCCAATGCGCTGTAGTG
ACTTTTTGTTTTTATTTTGGTGACATTCCCTCTGATCGTGAATTGGCTTA
TTTGTTTACCTTTTCCGTGGTGCAGTTTTTTTTTTTCTTCCGTATTTTTT
ATTTGCGTTGAGTGCGTGTTTTGTCACTGTGAATCTTAAAAACTTGGTAG
CTGTTTGGCAGTGCCTGTTCGTCGACCTTCATGGACCAGAAATAGGAATG
CCGGTCTCACGAGTTCGGGGTAAAAGCCAGTGTTGAGCGAATCAGAAGCA
GAAGCGAGTCCTGTATCGTACTGGGTTCAGATTGCGTCCTTTATAGTTTT
TTCTGAAGAACCGTGTCTGTTTTATTTGGCGGCGAATGATTCACTTTTTT
CACGTGAAGCAAAGCTGCCGTTTGCTCGGGCTCTCCGTCCTCCTCTACCT
CTTCGCTTTTTCCAGTGGTAGAGGCCCCTGCTACCTGCGGGTATCTGCCC
GTAAAATTCACTCTACCGGACCCGCACTATTCAAAGTATTGAGAATGACT
TGGCAGTGCAGTGTGTGCCCGCGGAAGCAGCGGTACTATAGCTATAGCGG
GCACCGACACTGTCCGACCTGTACCAACAGGGACCTCTGCTGTAGATGTT
TCGTTCCCCCTCTCCTGTGTGGTAAGGTATGGGTGTGAATGACGGCATAA
TCACCACATGTCACCATGCGCTTCGCAAATTTTGGTTTATTTTCACTGTT
GGTGCTATTCCTACATCCCCACTGTGTTTTCCTTGGACGGACATTTGATG
AAGGTGGATGGTCGACAAAAGTTTACCTCTCGTCTCGATGTGCGTTGTAT
TTCCTCGGACATCACTTCTTCCCCAGCGTGCAGGCTTCAACAATTTCATA
ATTCCAATATCCAGCAAGTTTCCCTCCCACACATCCCTTCGAACGTTTTT
TGTTTTGTTTTTTGTTTGTTTTCCACTGAAGATTTTGTTGAGAGAGCGAT
CGTCGTGAGATATGCCAAACATGTTGATTGTGTGTTTCCCTCTCCATATC
ATTGCCCCTTGTCAGAGAGTGTCCGGGTACGTTTCTGCCTGCGGTTTCAC
ATTTTGCCACCAGCGTACACCGTTCGCTTTAGGCACAACATCGTGCACGT
GATGTTTTTAGCTCAGCCTCTGTGGGTACATTTGGAGTCATCCATGGTAT
GATCTCCTGAGTCATTCGACCCCCTCGCACGTTGACATTGGGTATTGGTC
CGTCTTGTGTGCGAATGTGGGATACTGTCGTAGCAGCTGCTAACGCGGGA
TCTGGAGAGAGTCAAGGGAGACGCCTTCGCCCTTGAGCAGCGCTTGGACC
AGGCGCTGGAGGAGGAACGGCTCAATCAAAAAGCCTCCCAAGAGCAAGCC
TCCCACGAGCAAGAGACCCAGGAACCCTTCGGAGAGGCACAGGATGTCAC
CAGGCGGGATGACATTGCCGACGATGTTGTGACGGAGCAAGATGAGCAAG
CAAGCTACGGCGACGACACTGGCGGCCACGTTCAAGATGATGAGGATGGC
GCCGAGCAGCAAGGCTTACCGTTTCGAGCACAGGGGCATGGAAACGCTGC
CGAATCGACTCTGGACGAGGAGTTCCAAAACGAAAGAAGCGCTATGGTTG
GTGGTGGCGAGGAGAGGGGCGAGGGCGAAGCGCCGGAACAGCGCGGTATT
GGTGCGGGCGGTGACGATGTTGAGAGTGATCAAGAAGCCGATTTCGTGGG
GGAAGACGAGGAGGACAACGTTTGGCAGTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1290:16442..18922-

>mRNA_E-fasciculatus_F_contig1290.2193.1 ID=mRNA_E-fasciculatus_F_contig1290.2193.1|Name=mRNA_E-fasciculatus_F_contig1290.2193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1290:16442..18922- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCGCAGGGAGGCCAACGGCGCCTGGGAGTTGCTGGGGAGGGCGGAGGC
GTTGCCGGAGGAGAGGATATTCTCGGCCGCGAAGCAGGCCAAGTCCGGGG
GTGGCGGGGCCAACAAGGACCGCGCGAAGGACTTCACGGAAGCGTACAAT
CGCGCAGGGAGGCCAACGGCGCCTGGGAGTTGCTGGGGAGGGCGGAGGCG
TTGCCGGAGGAGAGGATATTCTCGGCCGCGAAGCAGGCCAAGTCCGGGGG
TGGCGGGGCCAACAAGGACCGCGCGAAGGACTTCACGGAAGCGTACAAGT
ACCTGCACGCGCTGGGGGACGTTTTCTCTAAGGTCGTGGAGGCGATGTCT
GAGGTCGGCAGGCGGGAAGAAGAGTGCCGGTTGGTGGAGCGCGAAACCGA
AAAAATGCTGTCTCGCCAAGGAGGAAACACCCGCTTTCAGGTACCTGCAC
GCGCTGGGGGACGTTTTCTCTAAGGTCGTGGAGGCGATGTCTGAGGTCGG
CAGGCGGGAAGAAGAGTGCCGGTTGGTGGAGCGCGAAACCGAAAAAATGC
TGTCTCGCCAAGGAGGAAACACCCGCTTTCAGCAGCTGCTAACGCGGGAT
CTGGAGAGAGTCAAGGGAGACGCCTTCGCCCTTGAGCAGCGCTTGGACCA
GGCGCTGGAGGAGGAACGGCTCAATCAAAAAGCCTCCCAAGAGCAAGCCT
CCCACGAGCAAGAGACCCAGGAACCCTTCGGAGAGGCACAGGATGTCACC
AGGCGGGATGACATTGCCGACGATGTTGTGACGGAGCAAGATGAGCAAGC
AAGCTACGGCGACGACACTGGCGGCCACGTTCAAGATGATGAGGATGGCG
CCGAGCAGCAAGGCTTACCGTTTCGAGCACAGGGGCATGGAAACGCTGCC
GAATCGACTCTGGACGAGGAGTTCCAAAACGAAAGAAGCGCTATGGTTGG
TGGTGGCGAGGAGAGGGGCGAGGGCGAAGCGCCGGAACAGCGCGGTATTG
GTGCGGGCGGTGACGATGTTGAGAGTGATCAAGAAGCCGATTTCGTGGGG
GAAGACGAGGAGGACAACGTTTGGCAGTAACAGCTGCTAACGCGGGATCT
GGAGAGAGTCAAGGGAGACGCCTTCGCCCTTGAGCAGCGCTTGGACCAGG
CGCTGGAGGAGGAACGGCTCAATCAAAAAGCCTCCCAAGAGCAAGCCTCC
CACGAGCAAGAGACCCAGGAACCCTTCGGAGAGGCACAGGATGTCACCAG
GCGGGATGACATTGCCGACGATGTTGTGACGGAGCAAGATGAGCAAGCAA
GCTACGGCGACGACACTGGCGGCCACGTTCAAGATGATGAGGATGGCGCC
GAGCAGCAAGGCTTACCGTTTCGAGCACAGGGGCATGGAAACGCTGCCGA
ATCGACTCTGGACGAGGAGTTCCAAAACGAAAGAAGCGCTATGGTTGGTG
GTGGCGAGGAGAGGGGCGAGGGCGAAGCGCCGGAACAGCGCGGTATTGGT
GCGGGCGGTGACGATGTTGAGAGTGATCAAGAAGCCGATTTCGTGGGGGA
AGACGAGGAGGACAACGTTTGGCAGTAA
back to top