mRNA_E-fasciculatus_F_contig1290.2191.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1290.2191.1
Unique NamemRNA_E-fasciculatus_F_contig1290.2191.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: A0A6H5KA37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA37_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.600e-15
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 3 
Query:    6 VDMLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIRTAMTGPDGVE 284
            V ML+ AA VL  G   ++E  R +IE+V +A++DLVDL+KTYQ+K KLS+VL S++FKRR  E +AVV +AI  L L + ++      +G++
Sbjct:  626 VMMLERAAKVLGNGGDTNSEVERALIEEVHDAVSDLVDLIKTYQNKNKLSKVLMSTLFKRRQEELDAVVDKAILHLHLGLQVQVGQDVAEGLD 718
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BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.450e-14
Identity = 42/93 (45.16%), Postives = 64/93 (68.82%), Query Frame = 3 
Query:    6 VDMLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIRTAMTGPDGVE 284
            V ML+ AA VL  G   ++E  R ++E+V +A++DLVDL+KTYQ+K KLS+VL S++FKRR  E +AVV +AI  L L + ++      +G++
Sbjct:  769 VMMLERAAKVLGKGGDTNSEVERALLEEVHDAVSDLVDLIKTYQNKNKLSKVLMSTLFKRRQEELDAVVDKAILHLHLGLQVQVGQDVAEGLD 861
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BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: D7FRQ5_ECTSI (Similar to CG1848-PA, isoform A/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.180e-14
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 3 
Query:    6 VDMLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIR 254
            V MLQ AA V+ TG   S E GR ++E+V  A++DLV+L+KTY++K KL+Q+LTS++FKRR +E  AV+ +AI  L L + ++
Sbjct:  549 VTMLQRAAKVVGTGGDTSTEEGRVLMEEVHGAVSDLVELIKTYENKSKLAQMLTSTLFKRRQDELNAVLDRAIWGLHLGLQVQ 631
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BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 8.500e-14
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   12 MLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIRTAM------TGPDGVEGS 290
            +L  A  V   G   + E  R +IEDV EAI DLV+L+KTYQSK KLS+VL S++FKRR +E +AVV +A+  LQL + ++         TG D  +GS
Sbjct:  697 LLNRADKVAGNGENTTGEVTRMLIEDVHEAIFDLVELIKTYQSKNKLSKVLMSTLFKRRQDELDAVVDRAMVRLQLGLHMQVGQDVSAIKTGMDQYKGS 795
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BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: D7FLN5_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.070e-13
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 3 
Query:    6 VDMLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIR 254
            V ML+ AA VL  G   + EA + ++EDV +A+ DLV+L+KTYQSK +LS VL S++FKRR +E +AVV +AI  L L + ++
Sbjct:  162 VMMLELAAKVLGKGGDTNGEAAQALMEDVHDAVCDLVELIKTYQSKNRLSNVLMSTLFKRRQDELDAVVDRAILRLHLGLQVQ 244
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.930e-13
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 3 
Query:    6 VDMLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIRTAMTGPDGVE 284
            V +L  A  V   G   + +  R +I+DV EAI DLV+L+KTYQSK KLS+VL S++FKRR +E +AVV +AI  LQL + ++       G++
Sbjct:  532 VMVLNRADKVAGNGENTTGKVARTLIDDVHEAIFDLVELIKTYQSKNKLSKVLMSTLFKRRQDELDAVVDRAIVRLQLGLQVQVGQDVKAGMD 624
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BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: D8LJ41_ECTSI (N/a (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ41_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.260e-12
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 3 
Query:   12 MLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIR 254
            ML+  A VL  G   S E  R +IE+V +A++DLV+L+KT+Q+K KL+QVLTSS+FKRR +E  AV+ +AI  L L + ++
Sbjct:    2 MLEREAKVLGKGGDTSEEDERVLIEEVHDAVSDLVELIKTFQNKSKLAQVLTSSLFKRRQDELNAVMDRAIWGLHLGLQVQ 82
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.870e-12
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3 
Query:   15 LQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSV 245
            L+ A  V+  G   + E  R +IEDV +AI DLV+L+KT+QSK KLS++L S++FKRR +E +AVV +AI  LQL +
Sbjct:  661 LKRAEKVVGKGSDTTGEVARVLIEDVHDAIFDLVELIKTFQSKNKLSKLLLSTLFKRRQDELDAVVDRAITRLQLQM 737
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BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: D7FLJ2_ECTSI (TKL family protein kinase protein kinase/ putative CTR1-like protein kinase/ leucine rich repeat pr n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ2_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 9.100e-12
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 3 
Query:    6 VDMLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSVTIR 254
            V ML+ AA VL  G   S E  R ++E+V +A++DL +L+KTYQ+K KL+Q+LTS++FKRR +E  AV+ +AI  L L + ++
Sbjct:  769 VMMLERAAKVLGQGGDTSTEEERVLMEEVHDAVSDLNELIKTYQNKSKLAQLLTSTLFKRRQDELNAVMDRAIWGLHLGLQVQ 851
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Match: A0A6H5L067_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L067_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.130e-11
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    6 VDMLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQVLTSSVFKRRLNEAEAVVAQAIPLLQLSV 245
            V ML+ AA VL  G   S E  R ++E+V +A++DLV+L+KT+Q+K KL +VLTS++FKRR +E  AV+ +A+  L + V
Sbjct:  122 VMMLERAAKVLGKGGDTSTEEERVLMEEVHDAVSDLVELIKTFQNKSKLGRVLTSTLFKRRQDELNAVIDRAVWGLHVQV 201
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1290.2191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KA37_9PHAE9.600e-1546.24Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FN19_ECTSI2.450e-1445.16Putative CTR1-like protein kinase/ leucine rich re... [more]
D7FRQ5_ECTSI6.180e-1449.40Similar to CG1848-PA, isoform A/ leucine rich repe... [more]
D8LHV1_ECTSI8.500e-1446.46Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FLN5_ECTSI2.070e-1349.40Protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
D8LRE9_ECTSI2.930e-1345.16Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D8LJ41_ECTSI1.260e-1249.38N/a (Partial) (Fragment) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KF25_9PHAE4.870e-1250.65Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FLJ2_ECTSI9.100e-1246.99TKL family protein kinase protein kinase/ putative... [more]
A0A6H5L067_9PHAE1.130e-1147.50Protein kinase domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1290contigE-fasciculatus_F_contig1290:5169..6334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue4.4e-11
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size299
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1290.2191.1prot_E-fasciculatus_F_contig1290.2191.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1290 5169..6323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927793.78706-CDS-E-fasciculatus_F_contig1290:5168..52311622927793.78706-CDS-E-fasciculatus_F_contig1290:5168..5231Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 5169..5231 -
1695995697.560571-CDS-E-fasciculatus_F_contig1290:5168..52311695995697.560571-CDS-E-fasciculatus_F_contig1290:5168..5231Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 5169..5231 -
1622927793.8012588-CDS-E-fasciculatus_F_contig1290:5892..60841622927793.8012588-CDS-E-fasciculatus_F_contig1290:5892..6084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 5893..6084 -
1695995697.5710726-CDS-E-fasciculatus_F_contig1290:5892..60841695995697.5710726-CDS-E-fasciculatus_F_contig1290:5892..6084Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 5893..6084 -
1622927793.8112931-CDS-E-fasciculatus_F_contig1290:6290..63231622927793.8112931-CDS-E-fasciculatus_F_contig1290:6290..6323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 6291..6323 -
1695995697.5813444-CDS-E-fasciculatus_F_contig1290:6290..63231695995697.5813444-CDS-E-fasciculatus_F_contig1290:6290..6323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1290 6291..6323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927793.8210895-UTR-E-fasciculatus_F_contig1290:6323..63341622927793.8210895-UTR-E-fasciculatus_F_contig1290:6323..6334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1290 6324..6334 -
1695995697.5904026-UTR-E-fasciculatus_F_contig1290:6323..63341695995697.5904026-UTR-E-fasciculatus_F_contig1290:6323..6334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1290 6324..6334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1290.2191.1

>prot_E-fasciculatus_F_contig1290.2191.1 ID=prot_E-fasciculatus_F_contig1290.2191.1|Name=mRNA_E-fasciculatus_F_contig1290.2191.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp
MLQDAAAVLATGRRPSNEAGRQVIEDVREAIADLVDLMKTYQSKKKLSQV
LTSSVFKRRLNEAEAVVAQAIPLLQLSVTIRTAMTGPDGVEGSPPN
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mRNA from alignment at E-fasciculatus_F_contig1290:5169..6334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1290.2191.1 ID=mRNA_E-fasciculatus_F_contig1290.2191.1|Name=mRNA_E-fasciculatus_F_contig1290.2191.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1166bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1290:5169..6334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACCGTCGACATGCTCCAGGACGCGGCTGCGGTGCTCGCTACGGTACGG
CGGTGGTAGTAGGCCTCCGGATATTGATATTGCCTGTGCTAATGTGCCCA
CGGTTGGCCACATATTTCATACTGCACTTACATTGTTGGTTGACCTCCCT
GAACTCATCTCCTTGTAACCCAGCGACGTAAATCCTGGTACATTCCACCG
CACCGGCATCTCGTATTGCGGTGTGCTACTCTCGAACCTTGTGCCACCAG
GGTCGTAGGCCGAGCAACGAGGCGGGGCGCCAAGTGATCGAGGATGTTCG
CGAGGCCATCGCGGACCTCGTTGATCTCATGAAGACCTACCAGAGCAAGA
AAAAGCTGTCCCAGGTGCTCACCTCCTCCGTGTTCAAGCGGCGCCTGAAC
GAGGCGGAAGCGGTGGTCGCCCAGGCCATCCCGCTCTTGCAGGTATGGCG
TGTTGTTTTGGATTGGATTGGCTCAGCCAAAGCCCATCGGTAGTGGATGG
TCGTAGCACATGGACGCTTGACGATGCGGTGATTCTGTGCAGCGGGTGCG
TGGACCGCGGTCCGGTCCTTGTGTAAACGATCGTATTATTCTCACCCGCA
AAACTTCCCGTACGGAGAAACCGCTACAGTAGCGGTGTCTCAACCATGGG
ATGATAAAATCAAAGCTTGAGTATCGTTGTTGGGCACTCTGTGCTATTGG
TCGGAAATAGAAGTCGGGACTGCCACGGTTTCGAGACTTTTTCAACGAGG
ATCGGGACTATCTGCGCCATCCTCTCGACCGACTAACGCTCAAGTTACGA
CACCACTAACCGTTTGGCCCCATGGTAACCAATCCGCATGACGTTATCTG
GAGTGTCACAACCGTCACGAAGCAGTTCCGTACGAGTATTGCTGCCGCTG
TTGCCTCCCGCTTCAACACGATTTCCCACCAACCCTGCTTTTGTGTGCCG
TTCTGGCGTCTCCTGCTCATGGGCTCCTAACCCCAATGCCACTCTGGGTG
CGATGTAGCTGATGTTACACCGTACCCTTGTGCGCAACATGATGCACTCT
GAAGTTCAATGATCCTTCTCCGTCTGGCTCACCCTTTGCACCTGGATATT
CAGTTAAGCGTTACTATCCGCACTGCGATGACTGGACCGGATGGGGTCGA
GGGTTCTCCTCCAAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1290:5169..6334-

>mRNA_E-fasciculatus_F_contig1290.2191.1 ID=mRNA_E-fasciculatus_F_contig1290.2191.1|Name=mRNA_E-fasciculatus_F_contig1290.2191.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1290:5169..6334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCCAGGACGCGGCTGCGGTGCTCGCTACGATGCTCCAGGACGCGGC
TGCGGTGCTCGCTACGGGTCGTAGGCCGAGCAACGAGGCGGGGCGCCAAG
TGATCGAGGATGTTCGCGAGGCCATCGCGGACCTCGTTGATCTCATGAAG
ACCTACCAGAGCAAGAAAAAGCTGTCCCAGGTGCTCACCTCCTCCGTGTT
CAAGCGGCGCCTGAACGAGGCGGAAGCGGTGGTCGCCCAGGCCATCCCGC
TCTTGCAGGGTCGTAGGCCGAGCAACGAGGCGGGGCGCCAAGTGATCGAG
GATGTTCGCGAGGCCATCGCGGACCTCGTTGATCTCATGAAGACCTACCA
GAGCAAGAAAAAGCTGTCCCAGGTGCTCACCTCCTCCGTGTTCAAGCGGC
GCCTGAACGAGGCGGAAGCGGTGGTCGCCCAGGCCATCCCGCTCTTGCAG
TTAAGCGTTACTATCCGCACTGCGATGACTGGACCGGATGGGGTCGAGGG
TTCTCCTCCAAACTTAAGCGTTACTATCCGCACTGCGATGACTGGACCGG
ATGGGGTCGAGGGTTCTCCTCCAAAC
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