mRNA_E-fasciculatus_F_contig129.2189.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig129.2189.1
Unique NamemRNA_E-fasciculatus_F_contig129.2189.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A6H5JUA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA3_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 2.350e-150
Identity = 223/235 (94.89%), Postives = 230/235 (97.87%), Query Frame = 1
Query:   58 MAEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGEANKEVSLKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETATFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFVMLHKDDLVETIVEAAGGALCR 762
            MAEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPT+QPIWVKDVGSKLKTCVNGSETGEA+KE+SLKEGDEVKVGTTNSIM RVRFQALRFCATQLTAE+KAELKALSK+CGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDL  GGTAKPLRPVPETA FGPVVTRSRRQGPFRVRHTADRRTHLSGDFF +LHKD+LVETIVEAAGGALCR
Sbjct:    1 MAEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTDQPIWVKDVGSKLKTCVNGSETGEAHKEISLKEGDEVKVGTTNSIM-RVRFQALRFCATQLTAEEKAELKALSKRCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLVAGGTAKPLRPVPETAAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCR 234          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: D8LKB3_ECTSI (Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB3_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 9.740e-150
Identity = 224/235 (95.32%), Postives = 229/235 (97.45%), Query Frame = 1
Query:   58 MAEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGEANKEVSLKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETATFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFVMLHKDDLVETIVEAAGGALCR 762
            MAEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGE +KE+SLKEGDEVKVGTTNSIM RVRFQALRFCATQLTAE+KAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLA GGTAKPLRPVPET  FGPVVTRSRRQGPFRVRHTADRRTHLSGDFF +LHKD+LVETIVEAAGGALCR
Sbjct:    1 MAEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGETHKEISLKEGDEVKVGTTNSIM-RVRFQALRFCATQLTAEEKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAAGGTAKPLRPVPETEAFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFAILHKDELVETIVEAAGGALCR 234          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A1A9V462_GLOAU (FHA domain-containing protein n=3 Tax=Glossina TaxID=44049 RepID=A0A1A9V462_GLOAU)

HSP 1 Score: 79.0 bits (193), Expect = 4.700e-13
Identity = 72/231 (31.17%), Postives = 114/231 (49.35%), Query Frame = 1
Query:   73 HTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGS--ETGEANKE--VSLKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETATFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFVMLHKD--DLVETIVEAAG 747
            +T+GR  + +    D SVSR HA  ++     ND   Q   +KD+GSK  T  N    +    NK+  +SLK  D ++ G   ++   V+   L    + LT +++ +++ +    GG V  +W    CTHL  L N SS+T KL+ ALL  +PV+   +LKDL     AK + P+P    + P    +     F +     R+T L G  F+ LH+   D+   +V++AG
Sbjct:   22 YTVGRLDADLELLNDSSVSRAHAVFQLIVKTKNDVQLQ---LKDLGSKYGTFHNKDIEKNKRLNKDECLSLKANDRIRFGRFENVWE-VKNHVLNVVISSLTKKEQTDVEEILGYMGGQVFTEWSNT-CTHL--LMNGSSITIKLLYALLNQKPVITSNYLKDLLKAIRAKKV-PLPNVEHYRPCFNEA-----FDLSRQPKRQTLLRGYTFIFLHRKHADMYGPLVQSAG 239          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A1Y1HX11_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HX11_KLENI)

HSP 1 Score: 72.4 bits (176), Expect = 7.180e-11
Identity = 81/251 (32.27%), Postives = 120/251 (47.81%), Query Frame = 1
Query:   61 AEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPI-----WVKDVGSKLKTCVNGSETGEANK-----EVSLKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAEL-KALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGL-RPVVHVGWLKDLAVGGTAKPLRPVPETATFGPVVTRSRRQGP---FRVRHTADRRTHLSGDFFVMLHK----DDLVETIVEAAGGAL 756
            A G + +GRK  +V+   D++VSR HA+I VGP P     E  I      +KD+ SK  T +N        K     E  LK+GD V  G+T+    R+ F  L  C     +  KA++ +  +K+ G  +   W   +CTHL  LA   +    L    +G  +PVV + W++  A   T  P +PVP+ ++F P  T +R + P    +V     RR  LSG F V+L      D  +  ++ AAGG L
Sbjct:   23 APGEYKVGRKDCTVTINTDKTVSRLHADIIVGPSPTVLSPEGAIPRPFIKIKDL-SKFGTFINKQHESHPIKDLPDAEAHLKDGDIVTFGSTHCSF-RLTFIPLVLCLPCGLSTSKAQIVERAAKQIGAFLVDTWSP-QCTHL--LAEDGTALSPLFYEAVGAGKPVVTLEWIQAFAARET--PSKPVPDPSSFLPTFTVARARAPPASHQVALPEARRGLLSG-FVVLLAATAPYDPHLRDMISAAGGQL 265          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A1V9YMP5_9STRA (FHA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMP5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.810e-10
Identity = 72/256 (28.12%), Postives = 120/256 (46.88%), Query Frame = 1
Query:    1 MWLLDVLDPKTGDVSTTVAMAEGIHTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPT-EQPIW-VKDVGSKLKTCVNGSETGEANKEVSLKEGDEVKVGTTNSIM--SRVRFQALRFCATQLTAEDKAELKALSKKCG--GAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETATFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFVMLHKDDLVETIVEAAGG 750
            MW+LD            + +  G  TLGRKG++++FP D S+SR+HA ++VG +   D   ++P + + D  S+  T VNG++  E N  V L+ GD++  G  ++++  S VR  A      +++   KA  + L + C   G         + TH +  A     TEK++ AL+   PVV   W++ +    +      +P    F PV    +   P  +  T  RR  L  DF V+      +  +++A GG
Sbjct:    9 MWVLD-----WESEGVALRLVHGEWTLGRKGNALNFPNDSSISRQHAVLKVGALEHLDRIHDRPTFTLVDSKSRFGTFVNGAQIPE-NVPVDLRVGDKITFGAKSTVLVVSYVRMVA------RISRIQKANRRRLLEGCKYIGMHVVSDPIPEITHCIMDAGNFVATEKILWALVHAHPVVSSDWIQAVLARDSLS--SDLPRCEGFLPVHAADQAATPSYLLDT--RRCSLYNDFIVVFLVPTSMVALLQAMGG 248          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A1B0B7Y5_9MUSC (Uncharacterized protein n=3 Tax=Nemorhina TaxID=44051 RepID=A0A1B0B7Y5_9MUSC)

HSP 1 Score: 68.6 bits (166), Expect = 1.540e-9
Identity = 66/233 (28.33%), Postives = 111/233 (47.64%), Query Frame = 1
Query:   73 HTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGEANKEVS------LKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETATFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFVMLHKD--DLVETIVEAAG 747
            +T+GR  + +    D SVSR HA  ++     ND   Q   +KDVGSK  T  N  +  E NK ++      LK  D ++ G   ++   V+   L    + L+  ++ +++ +    GG +  +W    CTHL+   N SS+T KL+ AL+  +P++   +LKDL     AK +  +P    + P    +     F +     R+T L    F+ LH+   D+   +V++AG
Sbjct:   22 YTVGRLDADLELVNDSSVSRAHAVFQLIIKSKNDVQLQ---LKDVGSKYGTFHN--KDIEKNKRLNKDECLPLKANDRIRFGRFENVWE-VKNDVLNVVTSSLSKREQTDVEEILGYIGGQIFTEWSNT-CTHLIM--NGSSITIKLLYALINQKPIITSNYLKDLLKAIRAKKVS-LPNMEHYRPCFDET-----FDLSRQPKRQTLLRDYTFIFLHRKHADMYGPLVQSAG 239          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A139AMD5_GONPJ (NIBRIN_BRCT_II domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AMD5_GONPJ)

HSP 1 Score: 63.5 bits (153), Expect = 5.830e-8
Identity = 58/195 (29.74%), Postives = 94/195 (48.21%), Query Frame = 1
Query:    1 MWLLDVLDPKTGDVSTTVAMAEGIH-TLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTE----QPIWVKDVGSKLKTCVNGSETGEANKEVSLKEGDEVKVGTTNSI-MSRVRFQALR----FCATQLTAEDKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLA 555
            MW+L    P T    TTV +  G   ++GRK  ++++P+++S+SR HA   VG V     T+      + + D    L T VNG  + EA +   + +GD++  G T +  +  VRF+  R     C + +    K E+  L+      +   W  A CTHL  L ++  VT K+V  L   R +V   W++ L+
Sbjct:    1 MWILTGDSPSTH--GTTVWLKPGKEVSIGRKDGTLTYPQEKSISRSHAAFVVGNVVEGMVTDLNRFPSVTLTDNSKFLYTFVNGVPSTEATRIRQVADGDQLSFGNTIADGLPLVRFRLKRSPVVLCLSGVPKNVKKEMTGLAAVLDLKIEPDWTDA-CTHL--LMHSLKVTYKVVACLADCRHIVSDNWVRALS 190          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A7S3RE56_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RE56_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 6.110e-8
Identity = 61/205 (29.76%), Postives = 101/205 (49.27%), Query Frame = 1
Query:    1 MWLLDVLDPKTGDVSTTVAMAEGIHTLGRKGSS-VSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGEANKEVSLKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGG-AVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETATFG 609
            MWL+       G +   V  +EG +T+GR  S+ V+   D+S+SRKH E+RVG         + + + D+GSK  T V+ S+        SL +G  + +G     +  VR + L  C + L+  D   ++A + +  G + S++W     +HLV   +   +T KL+LAL    PVV   W++ +A    A    P+P+ +  G
Sbjct:    9 MWLIADGSQTLGRLP--VPGSEGPYTVGRHESADVTVTGDKSISRKHLELRVGE------DGRTLRLTDLGSKFGTSVDNSKVDPGGT-ASLVDGASLSLGAK---VLTVRHEPLVLCYSGLSKADTEVVQAAAARLVGVSASKEWADGHTSHLVM--SKIKLTPKLMLALAHGCPVVAPAWVERVAARKAAA--EPLPDPSAVG 197          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: A0A0M0JXZ0_9EUKA (Nibrin (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXZ0_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 7.960e-8
Identity = 53/186 (28.49%), Postives = 90/186 (48.39%), Query Frame = 1
Query:   73 HTLGRKGSSVSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVN-----GSETGEA-------------------NKEVSLKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGGAVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAV 558
            + +GRK  ++    D+S+SR+HAE+ V        T+  +++KD+ SK  T +N      +E  +A                    +  ++  G ++KVGTT+ ++  V    L  CA+ ++ + KA  KA  ++ G A +++W     THLVT       T K + AL  L PVV+  WL D ++
Sbjct:   33 YLIGRKEGAIVLANDKSISRRHAELSV--------TDGRLFIKDLDSKFGTFINTQRLWNTEPTDAASLAESQPLLAEEPYGHPGGRRYAVPHGAKLKVGTTSFLVEHV---PLVVCASGVSGDAKATHKAACERLGAAQAKEWRE-DVTHLVT--PMMQWTPKFLYALGSLVPVVNPLWLHDASM 204          
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Match: R1BFD2_EMIHU (FHA domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BFD2_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 1.110e-7
Identity = 61/205 (29.76%), Postives = 101/205 (49.27%), Query Frame = 1
Query:    1 MWLLDVLDPKTGDVSTTVAMAEGIHTLGRKGSS-VSFPEDRSVSRKHAEIRVGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGEANKEVSLKEGDEVKVGTTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGG-AVSRKWDAAKCTHLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETATFG 609
            MWL+       G +   V  +EG +T+GR  S+ V+   D+S+SRKH E+RVG         + + + D+GSK  T V+ S+        SL +G  + +G     +  VR + L  C + L+  D   ++A + +  G + S++W     +HLV   +   +T KL+LAL    PVV   W++ +A    A    P+P+ +  G
Sbjct:    1 MWLIADGSQTLGRLP--VPGSEGPYTVGRHESADVTVTGDKSISRKHLELRVGE------DGRTLRLTDLGSKFGTSVDNSKVDPGGT-ASLVDGASLSLGAK---VLTVRHEPLVLCYSGLSKADTEVVQAAAARLVGVSASKEWADGHTSHLVM--SKIKLTPKLMLALAHGCPVVAPAWVERVAARKAAA--EPLPDPSAVG 189          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig129.2189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JUA3_9PHAE2.350e-15094.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKB3_ECTSI9.740e-15095.32Nibrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A1A9V462_GLOAU4.700e-1331.17FHA domain-containing protein n=3 Tax=Glossina Tax... [more]
A0A1Y1HX11_KLENI7.180e-1132.27Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A1V9YMP5_9STRA1.810e-1028.13FHA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A1B0B7Y5_9MUSC1.540e-928.33Uncharacterized protein n=3 Tax=Nemorhina TaxID=44... [more]
A0A139AMD5_GONPJ5.830e-829.74NIBRIN_BRCT_II domain-containing protein n=1 Tax=G... [more]
A0A7S3RE56_EMIHU6.110e-829.76Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A0M0JXZ0_9EUKA7.960e-828.49Nibrin (Fragment) n=1 Tax=Chrysochromulina tobinii... [more]
R1BFD2_EMIHU1.110e-729.76FHA domain-containing protein n=1 Tax=Emiliania hu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig129contigE-fasciculatus_F_contig129:35133..38466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.4
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog88036.EFJ19311
Preferred nameNBS1
KEGG koko:K10867
KEGG Pathwayko03440,ko04218,map03440,map04218
KEGG ModuleM00291,M00295
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016233,GO:0016234,GO:0022402,GO:0022414,GO:0023052,GO:0030870,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0035556,GO:0035825,GO:0042127,GO:0042405,GO:0042592,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0047485,GO:0048145,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098687,GO:0104004,GO:0140013,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047
EggNOG free text desc.Nijmegen breakage syndrome 1
EggNOG OGs2CMFP@1,2QQ7Y@2759,37HEM@33090,3G9QC@35493
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSMAD/FHA domain
Ec32 orthologEc-01_009620.1
Exons6
Model size765
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig129.2189.1prot_E-fasciculatus_F_contig129.2189.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig129 35133..38466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927793.6072464-CDS-E-fasciculatus_F_contig129:35132..351691622927793.6072464-CDS-E-fasciculatus_F_contig129:35132..35169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 35133..35169 +
1695995697.4477985-CDS-E-fasciculatus_F_contig129:35132..351691695995697.4477985-CDS-E-fasciculatus_F_contig129:35132..35169Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 35133..35169 +
1622927793.6240008-CDS-E-fasciculatus_F_contig129:35553..356351622927793.6240008-CDS-E-fasciculatus_F_contig129:35553..35635Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 35554..35635 +
1695995697.459009-CDS-E-fasciculatus_F_contig129:35553..356351695995697.459009-CDS-E-fasciculatus_F_contig129:35553..35635Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 35554..35635 +
1622927793.6368434-CDS-E-fasciculatus_F_contig129:36259..363411622927793.6368434-CDS-E-fasciculatus_F_contig129:36259..36341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 36260..36341 +
1695995697.4689057-CDS-E-fasciculatus_F_contig129:36259..363411695995697.4689057-CDS-E-fasciculatus_F_contig129:36259..36341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 36260..36341 +
1622927793.6484156-CDS-E-fasciculatus_F_contig129:36935..370541622927793.6484156-CDS-E-fasciculatus_F_contig129:36935..37054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 36936..37054 +
1695995697.481122-CDS-E-fasciculatus_F_contig129:36935..370541695995697.481122-CDS-E-fasciculatus_F_contig129:36935..37054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 36936..37054 +
1622927793.6658313-CDS-E-fasciculatus_F_contig129:37305..376561622927793.6658313-CDS-E-fasciculatus_F_contig129:37305..37656Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 37306..37656 +
1695995697.4913642-CDS-E-fasciculatus_F_contig129:37305..376561695995697.4913642-CDS-E-fasciculatus_F_contig129:37305..37656Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 37306..37656 +
1622927793.6799657-CDS-E-fasciculatus_F_contig129:38372..384661622927793.6799657-CDS-E-fasciculatus_F_contig129:38372..38466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 38373..38466 +
1695995697.500211-CDS-E-fasciculatus_F_contig129:38372..384661695995697.500211-CDS-E-fasciculatus_F_contig129:38372..38466Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 38373..38466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig129.2189.1

>prot_E-fasciculatus_F_contig129.2189.1 ID=prot_E-fasciculatus_F_contig129.2189.1|Name=mRNA_E-fasciculatus_F_contig129.2189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=255bp
MWLLDVLDPKTGDVSTTVAMAEGIHTLGRKGSSVSFPEDRSVSRKHAEIR
VGPVPGNDPTEQPIWVKDVGSKLKTCVNGSETGEANKEVSLKEGDEVKVG
TTNSIMSRVRFQALRFCATQLTAEDKAELKALSKKCGGAVSRKWDAAKCT
HLVTLANTSSVTEKLVLALLGLRPVVHVGWLKDLAVGGTAKPLRPVPETA
TFGPVVTRSRRQGPFRVRHTADRRTHLSGDFFVMLHKDDLVETIVEAAGG
ALCR*
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mRNA from alignment at E-fasciculatus_F_contig129:35133..38466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig129.2189.1 ID=mRNA_E-fasciculatus_F_contig129.2189.1|Name=mRNA_E-fasciculatus_F_contig129.2189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3334bp|location=Sequence derived from alignment at E-fasciculatus_F_contig129:35133..38466+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGCTTCTCGATGTGCTGGACCCAAAGACTGGAGGTAAGTGGTACTT ATCCCTAATTCTTTCAAGAGTCTATGCACAGCAAGCATCCATGATCCTGC TGCTTACAAGAATTGCAGCCCTATTTTTGAGCAAGCGCAAATTTGCAAAT TGTGATTTCAAATCTCTTCTTGCATGTCATGCAGTTCAGACAACTCCGCA GTGTGGACGTGTAGACGCTCCAATGCATACTGCCGTAAACTATACATGTA TAATTTGTACATGTAGAATAGTGCTGCAGGGACAAGGACGGAAACGTGTG AGCCGCAGAGGTTTCCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTTGGTATTTTTCACCTCGACTGAC TTGCTTGCCGTGTTTCAACAGACGTGAGCACCACGGTCGCCATGGCGGAG GGAATCCATACCTTGGGAAGAAAGGGCTCAAGTGTCTCCTTTCCTGAAGA TAGGTAAGTCACTTTACGTACGAATTGTCAATTATCGCTTTGCAGGCGTG TGCACGTAGTCTACAGCTGCCGTCTTCGGACTCTGTATGTCGAGCAATGT CATGTGTGCCTCCTTCATTGGCGTCGACCGCGGCACAAGCCATCTGACCC ATGAAGACACCGCGGGAAGATACAACCAACGCTTTCGTCCCACCCACTTT CCCACCCACAGGGAGGGACTGATTCCTCTTTCTTTACATTCTGCATACAC TGCTTCCGCTGTAGGCAACAGCTGTAGCAGCTAACAAACGTTTGAAAAGG GCGCCGTATCATCCATGCCACACGGAGAGCCGAATCGCCGGGTGGGCACT TCGTGATCCCTGACCGGTCTCCACACTTTCATTCGAAACGGGGATATCAG CAGGGAATGGAATGATCACATCCATGCCATACCGCACGCATGTTATGAGC CCTCCACACGTCGTCATCGACGCACAGCGGAGTGACACCAAAACCTCTCG GATATTCTATGCTCGCCTCTACAACCTCACCCCACACCAGGGTGGCGTGC GTTAAACCTTGTGTTAAGCCTTGTGTCCCTCGGAAATCATGATCTCAGAT TCTCTATTTGGATATTTGTGTGTGCAGGTCGGTCTCGCGGAAGCACGCGG AGATAAGGGTGGGGCCCGTTCCCGGGAACGATCCGACCGAGCAGCCCATC TGGGTCAAGGTACATATACGCCGCGGCTCCCGTTTTCCTGGATGACTTGG TTGAGAAACAATGTCGTGGAAACCCAGTTCTGAACGTCGAGACTATCTGC AACGACAGGGTCCGGGAAGAATCATCCATTTCTCGATGGCTGTACAGAAC CGAGAGATGTAAGACTGGGGGTCGCTTGCCTTCAAAGCGTTTTTTTCGCG ACACCACGCCGGGGAAGCGTATGATAGCATACCGCCTGCATGTCCGCACA CGTCTTGCGGTGATGCGCGTGGGGAACACGAGCAGACCCTACATGATCCT CTACATGACAGTGATGGTAGCAGTATCAAGGGTTTGCCTCCAACCACCGC GGTGGACTGCCTTTTTGTTTCGTAAGAATTAACGTCGCCCGGGTCTATTT GTTCATTTCCTCTCTCTCTCTGTGTGTCTCTCTCTCTCTCTCTCTCTCGT TCTCTCGGTTTGTTCGTGCCAATGGCAACATGTTAGTCTTGATCGTGGTT ACCCGAGCCAAAATCTGGTTTGCGCTTTTCCCTCCTTTTACATCCATCCA TGCATGCATGTCGCGCGCGATGATGCTCCGTGTTGTGCGTACGCGCCCCC CAGGACGTGGGCTCGAAGCTGAAGACCTGTGTCAACGGGAGCGAGACCGG CGAGGCCAACAAGGAGGTCTCCCTCAAGGAGGGGGACGAGGTCAAGGTCG GCACCACCAACAGCATCATGAGGTGAAGGAAGCACACACACGCACACACC ACATTTGCTTCGTGCCGTCCGTGCTGCTAATGGGAACTTGCGGCGCACGT GTGTGACCGCCTGCGGCGGACGGGCCTGCCTGTTGCCCCATCAGGGATGT ATGTCACCGAAAGCCCTCCTACAACCCGGGTCTCATTTCTGTTCCGATTT CCTTATCACCCCTCGAGCTGCTGCTTGTCCAACAACAACAAAAAAACATG CCCGGATGCACGCCGCAAACAAGCAGGGTCCGCTTCCAGGCGCTCCGCTT CTGCGCCACCCAGCTCACCGCCGAGGATAAGGCGGAGCTGAAGGCCCTGT CCAAGAAGTGCGGCGGCGCGGTGTCCCGGAAGTGGGACGCGGCCAAGTGC ACCCACCTCGTCACCCTCGCCAACACCAGCAGCGTCACCGAGAAGCTCGT GCTCGCGCTCCTGGGCCTCCGGCCCGTGGTCCACGTCGGCTGGCTGAAGG ACCTCGCCGTGGGGGGCACGGCAAAGCCGCTGAGGCCGGTGCCGGAGACG GCGACGTTCGGGCCGGTGGTGACGAGGTCGAGGCGGCAAGGGCCGTTCCG GGTTCGGCACACAGCCGATCGAAGGTGAGANNNNNNNNNNGGGGGAGGGG GGGGGGGGCGCTCGCGAACCGCTCTCAAGCTTTTGAGAGGATTGGACATT TTTTGTTTGCTTCTGGGCCGAACGTCCTTTGTTGTTGTTGTTTCGTTTGT TTGATACTACCTGGAAGGTGTTGTGAGATTGATCAACTAGGCTCCTCTCT ATGCGAAGAATCGTGGGTATTACCTCCCTCCCTGTGTTGAGACTGGTTGC CATGGTGATGTCTCCACACCTCCACCTCTCTCGCGCGCGGGCGTTGAAGC AATAATGAAACCGATGAATCCTACAAGAGCAGCAATCAAGTGATGGCCAC CAGGAAGAGACGAGACGTTCGATGGACCCCAAGCGACAAAAGATTTTGAT TCGGCTAACACCGCATTCTTGTGAAAGTTCGTTGGTGTTGTCATGGGTGT CATGAAGAGCCCAGCCCTACTTGGCATTCCGTTCGAAGCGATCCAGCTGG TAGCCTATTTATCTCATCGTCTCAACGGAGATATGTGAGCAATGCTGTCA AGACTACGCCGACCAACAGTGGACGAATGCCTCCCTTTCCCGTTGAGATA CTAGACAAAGATGACCCCCCCCCCCCAACTGTCTAATAGCTAAGGCATGC AAATCATGAGTACCCCCCCCCCCGCGTGCGCTTGTCCCTGTTGCCCCGTT CCTGCTCCGACTACGCTGCTGTTGCAATCGCACCCCAAAGAACCCATCTA TCGGGTGACTTTTTCGTGATGCTGCACAAGGACGACCTCGTGGAAACGAT CGTGGAGGCCGCTGGGGGAGCACTCTGCAGGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig129:35133..38466+

>mRNA_E-fasciculatus_F_contig129.2189.1 ID=mRNA_E-fasciculatus_F_contig129.2189.1|Name=mRNA_E-fasciculatus_F_contig129.2189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1530bp|location=Sequence derived from alignment at E-fasciculatus_F_contig129:35133..38466+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGCTTCTCGATGTGCTGGACCCAAAGACTGGAGATGTGGCTTCTCG
ATGTGCTGGACCCAAAGACTGGAGACGTGAGCACCACGGTCGCCATGGCG
GAGGGAATCCATACCTTGGGAAGAAAGGGCTCAAGTGTCTCCTTTCCTGA
AGATAGACGTGAGCACCACGGTCGCCATGGCGGAGGGAATCCATACCTTG
GGAAGAAAGGGCTCAAGTGTCTCCTTTCCTGAAGATAGGTCGGTCTCGCG
GAAGCACGCGGAGATAAGGGTGGGGCCCGTTCCCGGGAACGATCCGACCG
AGCAGCCCATCTGGGTCAAGGTCGGTCTCGCGGAAGCACGCGGAGATAAG
GGTGGGGCCCGTTCCCGGGAACGATCCGACCGAGCAGCCCATCTGGGTCA
AGGACGTGGGCTCGAAGCTGAAGACCTGTGTCAACGGGAGCGAGACCGGC
GAGGCCAACAAGGAGGTCTCCCTCAAGGAGGGGGACGAGGTCAAGGTCGG
CACCACCAACAGCATCATGAGGACGTGGGCTCGAAGCTGAAGACCTGTGT
CAACGGGAGCGAGACCGGCGAGGCCAACAAGGAGGTCTCCCTCAAGGAGG
GGGACGAGGTCAAGGTCGGCACCACCAACAGCATCATGAGCAGGGTCCGC
TTCCAGGCGCTCCGCTTCTGCGCCACCCAGCTCACCGCCGAGGATAAGGC
GGAGCTGAAGGCCCTGTCCAAGAAGTGCGGCGGCGCGGTGTCCCGGAAGT
GGGACGCGGCCAAGTGCACCCACCTCGTCACCCTCGCCAACACCAGCAGC
GTCACCGAGAAGCTCGTGCTCGCGCTCCTGGGCCTCCGGCCCGTGGTCCA
CGTCGGCTGGCTGAAGGACCTCGCCGTGGGGGGCACGGCAAAGCCGCTGA
GGCCGGTGCCGGAGACGGCGACGTTCGGGCCGGTGGTGACGAGGTCGAGG
CGGCAAGGGCCGTTCCGGGTTCGGCACACAGCCGATCGAAGCAGGGTCCG
CTTCCAGGCGCTCCGCTTCTGCGCCACCCAGCTCACCGCCGAGGATAAGG
CGGAGCTGAAGGCCCTGTCCAAGAAGTGCGGCGGCGCGGTGTCCCGGAAG
TGGGACGCGGCCAAGTGCACCCACCTCGTCACCCTCGCCAACACCAGCAG
CGTCACCGAGAAGCTCGTGCTCGCGCTCCTGGGCCTCCGGCCCGTGGTCC
ACGTCGGCTGGCTGAAGGACCTCGCCGTGGGGGGCACGGCAAAGCCGCTG
AGGCCGGTGCCGGAGACGGCGACGTTCGGGCCGGTGGTGACGAGGTCGAG
GCGGCAAGGGCCGTTCCGGGTTCGGCACACAGCCGATCGAAGAACCCATC
TATCGGGTGACTTTTTCGTGATGCTGCACAAGGACGACCTCGTGGAAACG
ATCGTGGAGGCCGCTGGGGGAGCACTCTGCAGGTAAAACCCATCTATCGG
GTGACTTTTTCGTGATGCTGCACAAGGACGACCTCGTGGAAACGATCGTG
GAGGCCGCTGGGGGAGCACTCTGCAGGTAA
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