mRNA_E-fasciculatus_F_contig129.2185.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig129.2185.1 vs. uniprot
Match: D8LKB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB6_ECTSI) HSP 1 Score: 2090 bits (5416), Expect = 0.000e+0 Identity = 1312/1515 (86.60%), Postives = 1353/1515 (89.31%), Query Frame = 1
Query: 1 SHVSVALCNVAAATQCETQLLSPRNDGSVATPEPASTQDKAAVNEGGGAGHGKDTNDHASQRQSDGGSSTQSLKVREPDNNNNHVVTHEGSEAAASATVDSNEGSVATGDGDRFWLTNTDILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVTGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXXXXXXXXXXXXXXXXXSVRAVGNXXXXXXXXXXXXXXXXXXDATEASVS----SGAALLDDGGVTAVSGDGSESXXXXXXXXVGPATSGESGVGSGPEASTXXXXXXXXXXXAVGKGSTRKSSSSTGERVASARLEAVEAVSVGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHXXXXXXXXXXXXXXXXXXXX----MGLMESDGLESADSDERGLDDXXXXXXXXXXXXTS----SRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSGSGCGEPRPLLYGGGDEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNASATPAAAASTQSHPWRIGEGGGSGGQVGGGVATSASIGENQPQGVDSNASPKGAGKDKKDSAAVVSERGTASTDNLADSLSMPPPTGTADHEENQRSPSSPGRAHDSKRSSLEATTAPAPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQQTTASHKTRQQSVGDDWYMEGAGRPHNPAYRHGNNKXXXXXXXXEDAWSRTAREITRLWVRAVGWLCSPSHSKVWPHMIEVGILGAINTCVSSSTLSGDEEGLAICSAALRNLSTATSARSLGGERAAACFGTAKRLLSCCSGQPEVQVNCAAAMVNFVDATHVQDLQTLDVVGLLGEHCSWEDHGDNTPSATIVGELAIYSLSKLCTRDFVPKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNPPLPPRGPWNFLHPNDALGLTALPVLTKGAHKKSGEMMDQGPLSVQRSPENTHDTMSGQNQGLQRGDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLERETMASLPEADLPTGSSKSAIESAAXXXXXXGTAGDGHSRKGRGDGRTLKNTAVRLASMISETSMAARAFSSKPSRAAKLETRILRNPVLATEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASGTKEATAAAEGAQGTVLDEEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXXASSGGFGSVGMSRPSYGSGKPIGSTVAGTPQQLAGLTHKVPQRRAG 4509
S+VSVALCNVAAATQCETQL SPRNDG ATPE ASTQDKAAVNEGGG GHGKDTNDH SQRQSDGGSS QSL+ REPDNN H+V+HEGS AA S T+D+NEGSVA GDGDRFWLTNT+ILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLV GDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFH ALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXX S+R VGNXXXXXXXX AT+ASVS SGAALLDDGGV AVSG +ES XXXXXX XXXXXXX AVG+G+TR+SSSSTGERVASARLEAVEAVS+GRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAH XXXXXXXXXXXXXXX MGL +SDGLESADSDERG D+ XXXXXXX SRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGS SGCGEPRPLLYGGG+EAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNAS+TPAAAASTQSHPWRIGEGGGSGG+VGGG+A SAS+GE QPQG+DSN SPK AGKD KDSAAV+SERG AS DNLADSLSM PPTGTADHEEN+RSPSSP R HDS RSSLEAT APAPTE XXXXXXXXXXXXXXXXXXXXXXXX TQQTTAS KT QQSVGDDWY EGAGRPHNPAYRHGN+K EDAWSRTAREITRLWVRAVGWLCSPSHS +WPHMI+VGILGAINTCVSSSTLSGDEEGLAICS LRNLSTATSARSLGGERAAACFGTAKRLLSCCS QP+VQVNCAAAMVN VDATHVQDLQTLDVVGLLGE+CSWEDHGDNTPSAT VGELAIYSLSKLCTRDF+PKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNP LPPRGPWNFLHPNDALGLTALPVLTKGAHKKSGE +DQG LSVQRSPENTHDTM+GQ+QGLQ GDTSATM STSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LERE MASL ADLP GSSKSAIESAA G GDG++RKGRGDGRTLKNTA RLA++ISETSMAARAF+SKPSRAAKLETRILRNPVL+TEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASG KEATAAAE A+GTVL+EEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXX GFGSVGMSRPSY S KPIGSTVAGTPQQLAGLTHKVPQRRAG
Sbjct: 853 SYVSVALCNVAAATQCETQLPSPRNDGGAATPELASTQDKAAVNEGGGGGHGKDTNDHGSQRQSDGGSSAQSLRSREPDNN--HMVSHEGSGAAVSETIDNNEGSVAAGDGDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVAGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHPALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXDSNAAA----------SIRGVGNXXXXXXXXV---------SATDASVSGTQSSGAALLDDGGVGAVSGGETESAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTADAVGQGATRRSSSSTGERVASARLEAVEAVSMGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTXXXXXXXXXXXXXXXXXXXMGLADSDGLESADSDERGFDEDGSGMXXXXXXXXXXXXXSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSTSGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNASSTPAAAASTQSHPWRIGEGGGSGGEVGGGLAASASVGEKQPQGMDSNTSPKAAGKDSKDSAAVMSERGLASNDNLADSLSMSPPTGTADHEENRRSPSSPERPHDSTRSSLEATAAPAPTEEXXXXXXXXXXXXXXXXXXXXXXXX----TQQTTASQKTLQQSVGDDWYTEGAGRPHNPAYRHGNSKQGSEGGAGEDAWSRTAREITRLWVRAVGWLCSPSHSNLWPHMIDVGILGAINTCVSSSTLSGDEEGLAICSTVLRNLSTATSARSLGGERAAACFGTAKRLLSCCSDQPQVQVNCAAAMVNLVDATHVQDLQTLDVVGLLGENCSWEDHGDNTPSATTVGELAIYSLSKLCTRDFLPKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNPELPPRGPWNFLHPNDALGLTALPVLTKGAHKKSGEAVDQGQLSVQRSPENTHDTMNGQHQGLQLGDTSATMTSTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEREAMASLAAADLPNGSSKSAIESAAAGVAATGAGGDGNNRKGRGDGRTLKNTAARLATVISETSMAARAFTSKPSRAAKLETRILRNPVLSTEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASGIKEATAAAERARGTVLEEEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXXXXXXGFGSVGMSRPSYASSKPIGSTVAGTPQQLAGLTHKVPQRRAG 2342
BLAST of mRNA_E-fasciculatus_F_contig129.2185.1 vs. uniprot
Match: A0A6H5JX20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX20_9PHAE) HSP 1 Score: 1652 bits (4277), Expect = 0.000e+0 Identity = 1060/1507 (70.34%), Postives = 1108/1507 (73.52%), Query Frame = 1
Query: 253 VVTHEGSEAAASATVDSNEGSVATGDGDRFWLTNTDILRDTIAGCLASATADVKSNLIKAMNNLMVSKERRATLVTGDEMPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSSINNAKKANKQQXXXXXXXXXXXXXXXXXXXXXSVRAVGNXXXXXXXXXXXXXXXXXXDATEASVS---SGAALLDDGGVTAVSGDGSESXXXXXXXXVGPATSGESGVGSGPEASTXXXXXXXXXXXAVGKGSTRKSSSSTGERVASARLEAVEAVSVGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTLIMHEDPNESPNEDMVADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKLTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHXXXXXXXXXXXXXXXXXXXX----MGLMESDGLESADSDERGLDDXXXXXXXXXXXXTSSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNSGGSG---------------------------------------------------------------------------------SGCGEPRPLLYGGGDEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNYNASATPAAAASTQSHPWRIGEGGGSGGQVGGGVATSASIGENQPQGVDSNASPKGAGKDKKDSAAVVSERGTASTDNLADSLSMPPPTGTADHEENQRSPSSPGRAHDSKRSSLEATTAPAPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQQTTASHKTRQQSVGDDWYMEGAGRPHNPAYRHGNNKXXXXXXXXEDAWSRTAREITRLWVRAVGWLCSPSHSKVWPHMIEVGILGAINTCVSSSTLSGDEEGLAICSAALRNLSTATSARSLGGERAAACFGTAKRLLSCCSGQPEVQVNCAAAMVNFVDATHVQDLQTLDVVGLLGEHCSWEDHGDNTPSATIVGELAIYSLSKLCTRDFVPKGDRVIATITTMMDFDPQTIKRLDDSVRSLVNPPLPPRGPWNFLHPNDALGLTALPVLTKGAHKKSGEMMDQGPLSVQRSPENTHDTMSGQNQGLQRGDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLERETMASLPEADLPTGSSKSAIESAAXXXXXXGTAGDGHSRKGRGDGRTLKNTAVRLASMISETSMAARAFSSKPSRAAKLETRILRNPVLATEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVRGDGASGTKEATAAAEGAQGTVLDEEGAFEVLTVPDDKWISPDLPPEAGKQXXXXXXXXXXXXXXXXXXASSGGFGSVGMSRPSYGSGKPIGSTVAGTPQQLAGLTHKVPQRRAG 4509
+V+HEGS AA S T+DSN GS A GDGDRFWLTNT+ILRDTIAGCLASATADVKSNLIKAMNNLMVS+ERRA LV GDE+PALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSS XXXXX S+R VGN AT+ASVS SGAALLDDGGV VSG +ES VGPATSG GVGSGPEASTXXXXXXX AVG+GSTR+SSS TGERVASAR EAVEAVS+GRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLT IMHEDPNE +LTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAH XXXXXXXXXXXX +GL +SDGLESADSDERGLD+ GRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSN GCGEPRPLLYGGG+EAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYN NAS+TPAAAAST SHPWRIGEGGGSGG+VGGGVA SAS+GE QP+G+DSN SPK +GKD K+SAAV+SER ASTDNLADSL+M PPTGTADHEENQRS SSPGRAH S+RSSLEAT APAP+EXXXXXXXXXXXXXXXXXXXXXXXXXXXX QQT ASHK QQSVGDDWY EGAGRPHNPAYRHGNNK XXXXX ED WSRTAREITR WVRAVGWLCSPSHS +WPHMIEVGILGAINTC SSSTLSGDEEGL I SAALRNLSTATSARSLGGERAAACFGTAKRLLS CS QP+VQVNCAAAMVN VDATHVQDLQTLDVVGLLGE+CSWEDHGDNTPSAT+VGEL IYSLSKLCTRDF+PKGDRVIATITTMMDFDPQ G N D + ++ L SGE++DQG LSVQRSPEN HD M+GQ+QGLQ GDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LERE MASLP ADL SSKSA ESAA G GDG++RKGRGD RTLK+TA RLA++ISETSMAARAFSSKPS+AAKLETRILRNPVL+TEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTT QGVRGDGASG KE TAAAE A VLDE GAFEVLTVPDDKWISPDLPPEAGKQ AS GGF SVGMSRP Y SGKPIGSTVAGTPQQLAGLTHK+PQRRAG
Sbjct: 1 MVSHEGSGAAVSETIDSNGGSEAAGDGDRFWLTNTNILRDTIAGCLASATADVKSNLIKAMNNLMVSEERRAKLVAGDELPALFELVHGYTPEVRELVARMLWNLTCEHDFHSALLEAGVTCTLLELLGSSXXXXXXXXXXXXXXXXXDSNAAA----------SIRGVGNGSGGA-------------SATDASVSGTQSGAALLDDGGVRPVSGGETESAQDGSSGDVGPATSGAGGVGSGPEASTXXXXXXXHTADAVGEGSTRRSSSGTGERVASARSEAVEAVSIGRKPSLEVRRNVLGAVMNLTSLSISDPRLDPSAVMSLLTFIMHEDPNERG-----------------------------------------ELTNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHSTGGTLGGXXXXXXXXXXXXXXXGLGLADSDGLESADSDERGLDE-------------DGGGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLCGPPTRWNNRTSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKCEGEPPXPNPPLPEGCGEPRPLLYGGGEEAAAITSRFLCELCILYSTEGGFDLPQRTFDALVKIAHYYNCNASSTPAAAASTHSHPWRIGEGGGSGGEVGGGVAASASVGEKQPRGMDSNTSPKASGKDSKESAAVMSERALASTDNLADSLAMFPPTGTADHEENQRSTSSPGRAHGSRRSSLEATAAPAPSEXXXXXXXXXXXXXXXXXXXXXXXXXXXX--QQTKASHKAWQQSVGDDWYTEGAGRPHNPAYRHGNNKQGXXXXXSEDVWSRTAREITRAWVRAVGWLCSPSHSNLWPHMIEVGILGAINTCASSSTLSGDEEGLVILSAALRNLSTATSARSLGGERAAACFGTAKRLLSYCSNQPQVQVNCAAAMVNLVDATHVQDLQTLDVVGLLGENCSWEDHGDNTPSATMVGELVIYSLSKLCTRDFLPKGDRVIATITTMMDFDPQGYGA----------------GGVNGSGRKDRILVSLL---------NSGEVVDQGQLSVQRSPENAHDAMNGQHQGLQLGDTSATMISTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEREAMASLPAADLSNVSSKSANESAAAGVAPKGAGGDGNNRKGRGDDRTLKHTAARLATVISETSMAARAFSSKPSKAAKLETRILRNPVLSTEEPPFELPWLLKHGKAERLKLLEESLGGTPSRSATRRTDPSSTKTTSSKHAEGKSNNGGGKGGQRQDADPHTTAGAEQLQHQQQGVRGDGASGIKEVTAAAERA---VLDEGGAFEVLTVPDDKWISPDLPPEAGKQQQKDNYHAAAGRGGTLGGASGGGFSSVGMSRPPYASGKPIGSTVAGTPQQLAGLTHKMPQRRAG 1400
BLAST of mRNA_E-fasciculatus_F_contig129.2185.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.380e-15 Identity = 85/202 (42.08%), Postives = 110/202 (54.46%), Query Frame = 1
Query: 1279 ADLWVTWQAVVLRLSFVEKYRALIVYHGDGQIFSHLKL--TNDPLSGKSSVMSMAHDRAYKRLIMGTMVNISCETSLYEELEGQVQVLREFLSEYEHEASGGAHXXXXXXXXXXXXXXXXXXXXMGLMESDGLESADSDERGLDDXXXXXXXXXXXXTSSRGRDWVRHELCAKLVSNLFSSKTLRERLSKKPIAGILVGLLC 1878
+DL W A VL LS YR LIV HG+G IF +K T+DPL G +++ +R ++ L M + N+SC+ L+EELEGQ+ +LREFLSEY+ A XXXXXXXXXXXXXXXXXXXX D R RH LCA++++NL S RERL+++P+ L LLC
Sbjct: 605 SDLDTMWLAAVLGLSRSAAYRPLIVRHGEGIIFGRIKALSTHDPLLGGGDTLNVTLERRHRELSMAILSNLSCDGELHEELEGQLPLLREFLSEYDAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQLPDP-------------RGDPRHLLCAQVIANLLRSAPFRERLARRPVGSALTELLC 793 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig129.2185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig129.2185.1 >prot_E-fasciculatus_F_contig129.2185.1 ID=prot_E-fasciculatus_F_contig129.2185.1|Name=mRNA_E-fasciculatus_F_contig129.2185.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1504bp SHVSVALCNVAAATQCETQLLSPRNDGSVATPEPASTQDKAAVNEGGGAGback to top mRNA from alignment at E-fasciculatus_F_contig129:5207..16884- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig129.2185.1 ID=mRNA_E-fasciculatus_F_contig129.2185.1|Name=mRNA_E-fasciculatus_F_contig129.2185.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=11678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig129:5207..16884- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig129:5207..16884- >mRNA_E-fasciculatus_F_contig129.2185.1 ID=mRNA_E-fasciculatus_F_contig129.2185.1|Name=mRNA_E-fasciculatus_F_contig129.2185.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=9024bp|location=Sequence derived from alignment at E-fasciculatus_F_contig129:5207..16884- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |