mRNA_E-fasciculatus_F_contig129.2184.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig129.2184.1
Unique NamemRNA_E-fasciculatus_F_contig129.2184.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig129.2184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig129contigE-fasciculatus_F_contig129:3207..3753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size547
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig129.2184.1prot_E-fasciculatus_F_contig129.2184.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig129 3289..3603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927792.5937235-UTR-E-fasciculatus_F_contig129:3206..32881622927792.5937235-UTR-E-fasciculatus_F_contig129:3206..3288Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig129 3207..3288 +
1695995696.9415176-UTR-E-fasciculatus_F_contig129:3206..32881695995696.9415176-UTR-E-fasciculatus_F_contig129:3206..3288Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig129 3207..3288 +
1622927792.6227682-UTR-E-fasciculatus_F_contig129:3603..37531622927792.6227682-UTR-E-fasciculatus_F_contig129:3603..3753Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig129 3604..3753 +
1695995696.9608002-UTR-E-fasciculatus_F_contig129:3603..37531695995696.9608002-UTR-E-fasciculatus_F_contig129:3603..3753Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig129 3604..3753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927792.609555-CDS-E-fasciculatus_F_contig129:3288..36031622927792.609555-CDS-E-fasciculatus_F_contig129:3288..3603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 3289..3603 +
1695995696.9524465-CDS-E-fasciculatus_F_contig129:3288..36031695995696.9524465-CDS-E-fasciculatus_F_contig129:3288..3603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig129 3289..3603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig129.2184.1

>prot_E-fasciculatus_F_contig129.2184.1 ID=prot_E-fasciculatus_F_contig129.2184.1|Name=mRNA_E-fasciculatus_F_contig129.2184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MGACSCDPLCLQKLKFKESKRSASAKLCTSQNLVQPEFGSSLENELFLPT
RRVGGRRVSPWHMSPCATMYHRFLGRKLARRMFVPLLCMPRMIALWTQAR
LAQD*
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mRNA from alignment at E-fasciculatus_F_contig129:3207..3753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig129.2184.1 ID=mRNA_E-fasciculatus_F_contig129.2184.1|Name=mRNA_E-fasciculatus_F_contig129.2184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=547bp|location=Sequence derived from alignment at E-fasciculatus_F_contig129:3207..3753+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCAGATGTAAGTTGCAGCCGTAGTCGAAACGCTGTGTATTCATACGGGT
CCCTGAAAGGAAGCTCTTCATACAAAATGTAGATGGGAGCTTGCTCCTGT
GACCCCTTATGTTTGCAAAAGTTAAAGTTCAAAGAGAGTAAACGCTCTGC
GTCAGCCAAGCTCTGTACCAGCCAGAATTTGGTTCAGCCTGAATTTGGTT
CATCACTGGAGAACGAGCTGTTTCTGCCAACACGCAGGGTAGGGGGGAGG
AGGGTGTCTCCCTGGCACATGTCGCCATGTGCTACCATGTATCATCGTTT
TTTGGGCAGGAAGCTAGCTCGTAGAATGTTTGTGCCTTTGCTTTGCATGC
CTCGCATGATCGCTCTATGGACACAAGCAAGACTCGCCCAAGACTAGTTC
GTTTTCCCTTTCGCGTTTCTTCCGCCAGCCTCTTTGGTCGTCGACAACCA
ATTGCGAACATCGTGGTTCCGTAACAGAAACTATACTTTTATTTTGTGCC
CAACAGGCATGCACTATCATCTCCCCCTTCGAACGCTGCTCGACTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig129:3207..3753+

>mRNA_E-fasciculatus_F_contig129.2184.1 ID=mRNA_E-fasciculatus_F_contig129.2184.1|Name=mRNA_E-fasciculatus_F_contig129.2184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig129:3207..3753+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAGCTTGCTCCTGTGACCCCTTATGTTTGCAAAAGTTAAAGTTCAA
AGAGAGTAAACGCTCTGCGTCAGCCAAGCTCTGTACCAGCCAGAATTTGG
TTCAGCCTGAATTTGGTTCATCACTGGAGAACGAGCTGTTTCTGCCAACA
CGCAGGGTAGGGGGGAGGAGGGTGTCTCCCTGGCACATGTCGCCATGTGC
TACCATGTATCATCGTTTTTTGGGCAGGAAGCTAGCTCGTAGAATGTTTG
TGCCTTTGCTTTGCATGCCTCGCATGATCGCTCTATGGACACAAGCAAGA
CTCGCCCAAGACTAGATGGGAGCTTGCTCCTGTGACCCCTTATGTTTGCA
AAAGTTAAAGTTCAAAGAGAGTAAACGCTCTGCGTCAGCCAAGCTCTGTA
CCAGCCAGAATTTGGTTCAGCCTGAATTTGGTTCATCACTGGAGAACGAG
CTGTTTCTGCCAACACGCAGGGTAGGGGGGAGGAGGGTGTCTCCCTGGCA
CATGTCGCCATGTGCTACCATGTATCATCGTTTTTTGGGCAGGAAGCTAG
CTCGTAGAATGTTTGTGCCTTTGCTTTGCATGCCTCGCATGATCGCTCTA
TGGACACAAGCAAGACTCGCCCAAGACTAG
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