mRNA_E-fasciculatus_F_contig12891.2182.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12891.2182.1
Unique NamemRNA_E-fasciculatus_F_contig12891.2182.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12891.2182.1 vs. uniprot
Match: D7G4S5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S5_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 5.920e-89
Identity = 136/162 (83.95%), Postives = 146/162 (90.12%), Query Frame = 1 
Query:    1 LWSCVGSVASLGVWLKSPDRSVSSLVLRQWPRFAGVGGAAGVVLTLPMMYHKMKTVDLDGLEDRAYRIALNRGVQTVDFYSAIGGVISLVLGLSTRRISAGQAKAGIARAVSPWSLMAQGIAAGSVGFVLGKVSGLPVQRPLELLNARGFEADGDDDGAERK 486
            LWS VGSVASLGVWL SPDRSVSSLVL+QWPRFAG+GG AGV++T+PMM  KM+TVDLDGLEDR YRIALN+GVQTVDFY AIGGV+SLVLGLSTRRI  GQAKAGIAR VSPWSLMAQGIAAGSVGFVLGK  GLP++RPLELLNARGFEAD D  G ERK
Sbjct:   42 LWSTVGSVASLGVWLNSPDRSVSSLVLKQWPRFAGLGGGAGVIMTVPMMCFKMQTVDLDGLEDRTYRIALNKGVQTVDFYGAIGGVMSLVLGLSTRRIGGGQAKAGIARVVSPWSLMAQGIAAGSVGFVLGKAVGLPMERPLELLNARGFEADRDVGGVERK 203
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12891.2182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S5_ECTSI5.920e-8983.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12891contigE-fasciculatus_F_contig12891:119..2643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1757
Ec32 orthologEc-20_000560.1
Exons5
Model size492
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12891.2182.1prot_E-fasciculatus_F_contig12891.2182.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12891 119..2643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927792.48881-CDS-E-fasciculatus_F_contig12891:118..1901622927792.48881-CDS-E-fasciculatus_F_contig12891:118..190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 119..190 -
1695995696.8921556-CDS-E-fasciculatus_F_contig12891:118..1901695995696.8921556-CDS-E-fasciculatus_F_contig12891:118..190Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 119..190 -
1622927792.5066366-CDS-E-fasciculatus_F_contig12891:785..9151622927792.5066366-CDS-E-fasciculatus_F_contig12891:785..915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 786..915 -
1695995696.9008622-CDS-E-fasciculatus_F_contig12891:785..9151695995696.9008622-CDS-E-fasciculatus_F_contig12891:785..915Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 786..915 -
1622927792.5204833-CDS-E-fasciculatus_F_contig12891:1386..14851622927792.5204833-CDS-E-fasciculatus_F_contig12891:1386..1485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 1387..1485 -
1695995696.9107287-CDS-E-fasciculatus_F_contig12891:1386..14851695995696.9107287-CDS-E-fasciculatus_F_contig12891:1386..1485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 1387..1485 -
1622927792.5367815-CDS-E-fasciculatus_F_contig12891:1790..19251622927792.5367815-CDS-E-fasciculatus_F_contig12891:1790..1925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 1791..1925 -
1695995696.9229457-CDS-E-fasciculatus_F_contig12891:1790..19251695995696.9229457-CDS-E-fasciculatus_F_contig12891:1790..1925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 1791..1925 -
1622927792.5528383-CDS-E-fasciculatus_F_contig12891:2587..26431622927792.5528383-CDS-E-fasciculatus_F_contig12891:2587..2643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 2588..2643 -
1695995696.9321573-CDS-E-fasciculatus_F_contig12891:2587..26431695995696.9321573-CDS-E-fasciculatus_F_contig12891:2587..2643Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12891 2588..2643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12891.2182.1

>prot_E-fasciculatus_F_contig12891.2182.1 ID=prot_E-fasciculatus_F_contig12891.2182.1|Name=mRNA_E-fasciculatus_F_contig12891.2182.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
LWSCVGSVASLGVWLKSPDRSVSSLVLRQWPRFAGVGGAAGVVLTLPMMY
HKMKTVDLDGLEDRAYRIALNRGVQTVDFYSAIGGVISLVLGLSTRRISA
GQAKAGIARAVSPWSLMAQGIAAGSVGFVLGKVSGLPVQRPLELLNARGF
EADGDDDGAERKS*
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mRNA from alignment at E-fasciculatus_F_contig12891:119..2643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12891.2182.1 ID=mRNA_E-fasciculatus_F_contig12891.2182.1|Name=mRNA_E-fasciculatus_F_contig12891.2182.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2525bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12891:119..2643- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTGGAGCTGTGTCGGCTCGGTCGCCTCCTTGGGCGTGTGGCTCAAGTC
CCCAGAGTGAGATTCTGTCTGTCGAAAGGGTCTGTCTGTCGAAAGGGTCT
GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT
CTGTTTATCGATCTGCGTCCAAGTTCCGACAGCACACTCAACCCGACCCC
GCTCCTACTACCGAGCGCTCTGCTTTGCTTGCTTGCTGCAGCTGACGTAG
CACACAACAAGTTTCATAGATTGCAATGATGTCGTCATCCTGGGGGGTAA
TCGATGTGTGTCCGATCACACCATTACAAGGGGGCTAGAGTGTGGTTGCA
ATCCTCATTAATTTTTGGTACGGTGCATCCGTGCTGTGGATCTGGATCAT
TCCTCACACACGACACTTCATTGGTTGATGCTAGTCTAGGCTATAGATAG
TGTCTCGCGTGTGGTTATCAACAACGAAGCCTGCCCGGCAGCGCATCCAT
CTGATCTTACTGATGCTGCTCGGTCTGGAAAAGTAACACTCCACCTTCAG
TAGCTGGTGATACGAGGGCGGGAATTTCACCAGTAACTCGCCTGCCCCTC
TTCGTGCTACATACGCCTAATCTTGCCCCGGGTCCTCGAGTGCGGCCGTC
CCTCCTCCCGCCCCCTCCTTCTAACACTATGACCCACTGCTCTCTGCGTA
CCTCCTTCCAAAATCCAGCCGCAGCGTTTCGTCTCTGGTGCTCAGGCAGT
GGCCGCGCTTTGCTGGCGTTGGGGGCGCGGCCGGGGTCGTACTGACCCTA
CCCATGATGTACCACAAGATGAAGACGGTCGACCTCGATGGATTGGAAGA
CCGGTGCGGGCGAAACTGCTACTGGCTTGATTGATATTTTTGGAACTTTT
TTTGTCTTGTACGCAAGTTGGTGAATGGGCTGCTGTTGCAGCTGGGTGTC
TTTTCATCTTGCGGGTGCCAACTTATTTATATTTTGAGAGAACAAGGCCT
GACCCCTGCTTGATTGTTCGCGATAGCGAAGGGCTTCCCAGTTCCCGTTA
CTTTCAAGAGGCGTTAGTTGCATCGAAGGATCCGTACAGGCTGACTGACC
TCCCCCCACGTCCTCGTTTTGTTGTCATCGCACGTTTGACTTGACTCCAC
TCCCACAGAGCCTACAGAATAGCCCTCAACAGGGGAGTGCAAACGGTGGA
CTTCTACAGCGCGATCGGGGGCGTGATATCGCTTGTCCTGGGCCTGTCAA
CACGCAGGTACTGCTGTAGGTGTTAATCTCTGCGGATGGTAGACCAGACT
GAGTTACGTATCGTTAAGTGCGGGCGAACGCACAGACAGGCGTGCGTGCG
ATCGATCGATCGATGGTTTTCTCCACAGCCAAGAGGGTGCGCAGAAACCC
GACCCACACGTGCGAGGAAAGACAGCTCTCGACGAGATCTTGTTTCCTAT
GCATGCTATTCGGTACATATTGGCAGCGCTTTGTTGTGGGGCAATCGATA
TTTACCAGTCAACTGACGTGGGCTGTCTGTCTGTACGCTATAAACACTAC
GTGAGCGTTCAAGCTTTTGTGTTGTAAATAGTACGGCGGCACGAACGTTT
AGGTGCAGCGACAGGTTCGAGAGATGGGGTTGGAGAACAGCTTGTCACAG
AATAGTCTCAGCAGAATGAATTCACTCAGCCGGCTGTTCCTGTTTGTCCA
CGCCTGCCTGCTGTCTTTGTCCTTGCAGGATTAGCGCAGGCCAAGCAAAG
GCGGGGATTGCGAGGGCTGTGTCTCCTTGGTCGTTGATGGCCCAGGGCAT
CGCCGCAGGCAGTGTAGGCTTCGTCCTCGGCAAGGTTTCGGGGCTCCCTG
TGCAGAGGGTAAGCGACTGACTATGTCTGCGATCGAATCGTGTGAGGGTC
ATCCCCACTATTCGGTAGTTGTAGGTTGGTCTAAGATGATGCCATGCTGT
TCTTTATCTGGATACCATTTTGTTGCTTGCCGTCGTGATTTTGTTTCCCC
GTTCTCACTCCATCCTGGTGCTTTTGTGGTTTCTGGTTCTGTTGTAATTC
GGGGGCTGCCAAAGAGGGCTGGGTCCTTTCGCATTACAGCTTGTGTCATG
CACGGGTGTCACGCACTGCTGTTGCAAAGCACCCAAGAACCGGTCGTTCG
TTTGGTCGTTTGGTTCCCGTTGATATACGCCATCACTAGTATGTGAGAAA
CATATCATTCTTCGTTCGAATGGCTGCAACCATGCCCCCCCCCCGATATC
CCACCTTCCCGCCCATCCCTGCTCCCTACTCCCACCCTGCCTTCCCTTCC
TCACACACACGCACTCGTGTGTTCCTTCTGTCTTTCACAAAACCGCCCAA
CTTGTTTTGGTCTTCTTCTGCTGCGTTCTGCGGCAATCGACGAACATCTC
ATCCTGAACTACTGGTCTTGACGGGAAATGAACCATCCTCGCTATCCATC
CAGCCGCTGGAGCTGCTGAACGCCCGAGGCTTCGAGGCGGACGGCGATGA
TGATGGTGCCGAAAGAAAATCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12891:119..2643-

>mRNA_E-fasciculatus_F_contig12891.2182.1 ID=mRNA_E-fasciculatus_F_contig12891.2182.1|Name=mRNA_E-fasciculatus_F_contig12891.2182.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12891:119..2643- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTTGGAGCTGTGTCGGCTCGGTCGCCTCCTTGGGCGTGTGGCTCAAGTC
CCCAGACTTTGGAGCTGTGTCGGCTCGGTCGCCTCCTTGGGCGTGTGGCT
CAAGTCCCCAGACCGCAGCGTTTCGTCTCTGGTGCTCAGGCAGTGGCCGC
GCTTTGCTGGCGTTGGGGGCGCGGCCGGGGTCGTACTGACCCTACCCATG
ATGTACCACAAGATGAAGACGGTCGACCTCGATGGATTGGAAGACCGCCG
CAGCGTTTCGTCTCTGGTGCTCAGGCAGTGGCCGCGCTTTGCTGGCGTTG
GGGGCGCGGCCGGGGTCGTACTGACCCTACCCATGATGTACCACAAGATG
AAGACGGTCGACCTCGATGGATTGGAAGACCGAGCCTACAGAATAGCCCT
CAACAGGGGAGTGCAAACGGTGGACTTCTACAGCGCGATCGGGGGCGTGA
TATCGCTTGTCCTGGGCCTGTCAACACGCAGAGCCTACAGAATAGCCCTC
AACAGGGGAGTGCAAACGGTGGACTTCTACAGCGCGATCGGGGGCGTGAT
ATCGCTTGTCCTGGGCCTGTCAACACGCAGGATTAGCGCAGGCCAAGCAA
AGGCGGGGATTGCGAGGGCTGTGTCTCCTTGGTCGTTGATGGCCCAGGGC
ATCGCCGCAGGCAGTGTAGGCTTCGTCCTCGGCAAGGTTTCGGGGCTCCC
TGTGCAGAGGGATTAGCGCAGGCCAAGCAAAGGCGGGGATTGCGAGGGCT
GTGTCTCCTTGGTCGTTGATGGCCCAGGGCATCGCCGCAGGCAGTGTAGG
CTTCGTCCTCGGCAAGGTTTCGGGGCTCCCTGTGCAGAGGCCGCTGGAGC
TGCTGAACGCCCGAGGCTTCGAGGCGGACGGCGATGATGATGGTGCCGAA
AGAAAATCGTGACCGCTGGAGCTGCTGAACGCCCGAGGCTTCGAGGCGGA
CGGCGATGATGATGGTGCCGAAAGAAAATCGTGA
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