mRNA_E-fasciculatus_F_contig12889.2177.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12889.2177.1
Unique NamemRNA_E-fasciculatus_F_contig12889.2177.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: A0A6H5JI02_9PHAE (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI02_9PHAE)

HSP 1 Score: 409 bits (1050), Expect = 1.120e-137
Identity = 201/203 (99.01%), Postives = 203/203 (100.00%), Query Frame = 1
Query:    1 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLKV 609
            IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAE+AFERTLK+
Sbjct:  166 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEVAFERTLKI 368          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: A0A7S2XUF9_9STRA (ADP,ATP carrier protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUF9_9STRA)

HSP 1 Score: 284 bits (726), Expect = 2.240e-88
Identity = 138/203 (67.98%), Postives = 168/203 (82.76%), Query Frame = 1
Query:    1 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLKV 609
            +E HE+RKF+ MSVMMFAIIYVFTMTRDTKD LVVTNCGAEAIAFLKVY V+PAA +FMIGY+  S+H   RA+F++TI PFF FY LFAFV+YP RG LH SA   G  + V S+++N+GR+W+FS+YY+++ELWGSAGVPLLFW CANEVT + QAKRFYPLFA++GN  PIASG TM +VS +R  G+DA+ AFE +LKV
Sbjct:  213 VEPHEMRKFMAMSVMMFAIIYVFTMTRDTKDTLVVTNCGAEAIAFLKVYGVVPAATIFMIGYSACSHHFSKRAVFYLTIVPFFLFYGLFAFVLYPARGFLHGSA-TEGDTKGV-SYLVNLGRYWLFSVYYIIAELWGSAGVPLLFWQCANEVTSIKQAKRFYPLFALVGNFAPIASGLTMKHVSSHRSQGVDADSAFEHSLKV 413          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: A0A7S3UWV3_HETAK (ADP,ATP carrier protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWV3_HETAK)

HSP 1 Score: 270 bits (690), Expect = 5.090e-84
Identity = 138/203 (67.98%), Postives = 164/203 (80.79%), Query Frame = 1
Query:    1 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLKV 609
            IE  E+RKF  MSVMMFAII+VFTMTRDTKD L+VTNCGAEAIAFLKVY V+PAAA FMI Y+ L+ H+  R  F+ TI PFFA++ LFAFV YPMRGVLH SAG     E   S+++N+GR+W+FSLYYVV+E+WGSAGVPLLFW  ANEVT + QAKRFYPLFA++GNL PIASG TM +V+R+R  G+D E AFE +LKV
Sbjct:  119 IEGPEVRKFAAMSVMMFAIIFVFTMTRDTKDTLIVTNCGAEAIAFLKVYGVVPAAAGFMIWYSTLTQHLSKRKCFYATIVPFFAWFGLFAFVAYPMRGVLHASAG----KEAGLSYVVNLGRYWLFSLYYVVAEIWGSAGVPLLFWQTANEVTSIPQAKRFYPLFALVGNLAPIASGMTMKHVTRHRD-GVDPEAAFEHSLKV 316          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: W7T7G0_9STRA (ADP,ATP carrier protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7G0_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.870e-75
Identity = 125/201 (62.19%), Postives = 154/201 (76.62%), Query Frame = 1
Query:   13 ELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSR--NRPAGMDAEMAFERTLKV 609
            E  KF  +S+MMF IIYVFTMTRDTKD L+V+ CGAEAIAFLKVY V+PAA  FM+GY+  +N++  RALF++TI PFFAFYALFA+V+YP R  LH    A     ++  ++ N+ R+W+FSLYY+ SELWGSAGVPLLFW CAN+VTP+ QAKRFYPLFA+LGN+ PI SGQT A+VS+   R    D  +AFE TLKV
Sbjct:  137 EAPKFFALSLMMFCIIYVFTMTRDTKDTLIVSYCGAEAIAFLKVYGVVPAAMAFMVGYSAAANYLSKRALFYVTIIPFFAFYALFAYVLYPNRHNLHLEQFAPSPGANL-PYVRNLFRYWIFSLYYITSELWGSAGVPLLFWQCANDVTPIDQAKRFYPLFAVLGNMAPIVSGQTTAFVSKWIKRLHPHDEHLAFENTLKV 336          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: K0RFM5_THAOC (ADP,ATP carrier protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RFM5_THAOC)

HSP 1 Score: 234 bits (598), Expect = 1.200e-69
Identity = 117/204 (57.35%), Postives = 149/204 (73.04%), Query Frame = 1
Query:    1 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHH--SAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLK 606
            I + EL  F  MSVMMF  IYVFT  RDTKD LVV+NCGAEAI FLK+YAV+P AA+F++GY+ LSN +G  ALF++T+ PFF FYA+FAFV++P R  +H   + GA        +  +N+ R+W +SL++VVSELW SAGVPLLFW CAN+VTPM QAKRFYPLFA+ GNLGPI SG+ M+Y+   +    D ++ F  TLK
Sbjct:  195 ISRSELPHFACMSVMMFLFIYVFTTVRDTKDTLVVSNCGAEAIPFLKLYAVMPCAAMFIVGYSKLSNVLGREALFYVTLLPFFVFYAIFAFVLFPNRDEIHFPPAGGAAVVGNGALNAALNLARYWSYSLFFVVSELWASAGVPLLFWQCANDVTPMAQAKRFYPLFAVTGNLGPIVSGKVMSYIVSLQKT--DDDVGFGSTLK 396          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: A0A482SNG1_9ARCH (NTP/NDP exchange transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNG1_9ARCH)

HSP 1 Score: 231 bits (588), Expect = 1.330e-69
Identity = 115/200 (57.50%), Postives = 151/200 (75.50%), Query Frame = 1
Query:   13 ELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGM-DAEMAFERTLKV 609
            EL+KF ++S MMF I++VFTMTRDTKDAL+VTNCGAE+IAFLKVY V+PAA  FM+ Y+ L+  +    LF+  + PFF FYA FAF++YP+R +LH +  A+  +   FS  +N+ R+W+FSLYY+VSELWGSAGVPLLFW+CAN+V  + QAKR YPL +++GNLGPI SG TMA VS      + + E AFE +LK+
Sbjct:   81 ELKKFFSLSFMMFWIVFVFTMTRDTKDALIVTNCGAESIAFLKVYGVIPAAVSFMVIYSALARRLSHSHLFYAILLPFFVFYAAFAFILYPLRNILHPTHWALPNNG--FSFAVNLLRYWIFSLYYIVSELWGSAGVPLLFWSCANDVVVIDQAKRLYPLMSLIGNLGPILSGVTMAMVSAFVAKNVHNDEAAFELSLKI 278          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: B8LCT8_THAPS (ADP,ATP carrier protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCT8_THAPS)

HSP 1 Score: 223 bits (567), Expect = 3.620e-65
Identity = 114/207 (55.07%), Postives = 146/207 (70.53%), Query Frame = 1
Query:    1 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLH----HSAGAMGKDEH-VFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLK 606
            I K EL  FL+MS++MF  IYVFT  RDTKD LVV+NCGAEAI FLK+Y V+P AA+F++ Y+ LSN +    LF++T+ PFF FY +FAFV++P R ++H     +AGA         +   N+ R+W FSL+++VSELW SAGVPLLFW CAN+VTPM QAKRFYPLFAI+GNL PI SG+ M+YV   +    D  + F  TLK
Sbjct:  180 ISKAELPHFLSMSILMFLFIYVFTTVRDTKDTLVVSNCGAEAIPFLKLYGVMPCAAMFIVAYSKLSNVLSKSGLFYVTLVPFFVFYGVFAFVLFPNRDLIHFPPAEAAGAXXXXXXXALTAATNLLRYWSFSLFFIVSELWASAGVPLLFWQCANDVTPMAQAKRFYPLFAIIGNLAPIVSGKVMSYVISLQKTNDD--VGFGSTLK 384          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: A0A7S2XIS6_9STRA (ADP,ATP carrier protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIS6_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.900e-64
Identity = 111/205 (54.15%), Postives = 142/205 (69.27%), Query Frame = 1
Query:    1 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHS---AGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLK 606
            I + EL  F +MS MMF  IYVFT  RDTKD LVVTNCGAEAI FLK+Y V+P A +F++ Y+ LS  +   ALF +T+ PFF FYALFA+V+YP R  +H       A G+     +  +N+ R+W FSLY++VSELW SAGVPLLFW  AN+VT M QAKRFYPLFAI GNL PI SG+ M+++  ++ +  D+   FE +LK
Sbjct:  144 ISESELPHFFSMSFMMFLFIYVFTTARDTKDTLVVTNCGAEAIPFLKLYGVMPCAMIFIVAYSKLSETLSKEALFQVTLLPFFIFYALFAWVLYPNRDAIHFIPAVTAATGEAVSAGTAALNVLRYWSFSLYFIVSELWASAGVPLLFWQVANDVTSMEQAKRFYPLFAITGNLAPIVSGKVMSWIVDSQKSTHDS--LFEVSLK 346          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: A0A7S2WMM2_9STRA (ADP,ATP carrier protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WMM2_9STRA)

HSP 1 Score: 217 bits (553), Expect = 6.180e-64
Identity = 108/202 (53.47%), Postives = 143/202 (70.79%), Query Frame = 1
Query:    1 IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLK 606
            I K E  +FL MS+MMF  IY+FT  RDTKD+LVV+NCGAEAI FLK+Y V+P A LF++GY+ LS+ +G +ALF+ T++PF  FY +FAFV++P R  +H         E   + ++N+ R+W FSLY+++SELW SA +PLLFW  ANEVTPM QAKRFYPLFA+LGNL P+ SG+ M Y+   +    D  + F  TLK
Sbjct:  109 ITKSEFPQFLCMSIMMFLFIYIFTTVRDTKDSLVVSNCGAEAIPFLKLYGVMPTAFLFILGYSKLSSVLGKKALFYTTLSPFIIFYTVFAFVLFPKRDSIHFLPAT---GEGAANAVVNLFRYWSFSLYFIISELWASASIPLLFWQFANEVTPMAQAKRFYPLFAVLGNLAPVVSGKVMTYLVSIQKTTDD--VGFGSTLK 305          
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Match: A0A7S2PNE8_9STRA (ADP,ATP carrier protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNE8_9STRA)

HSP 1 Score: 217 bits (552), Expect = 6.530e-63
Identity = 110/200 (55.00%), Postives = 140/200 (70.00%), Query Frame = 1
Query:   13 ELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYAVLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVLHH--SAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCANEVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERTLK 606
            E+  F +MSVMMF  IYVFT  RDTKD LVV+NCGAEAI FLK+Y V+P A  F++ Y+ LSN +G + LF++T+ PFF FY +FAFV++P R V+H   + GA        +   N+ R+W FSL+++VSELW SAGVPLLFW CAN+VTPM QAKRFYPLFA+ GNL PI SG+ M+ V   +    D  + F  TLK
Sbjct:  372 EMPHFASMSVMMFLFIYVFTTVRDTKDTLVVSNCGAEAIPFLKLYGVMPCATAFIVMYSKLSNALGKQTLFYVTLLPFFVFYGVFAFVLFPNRDVIHFPLAEGAAAAGGGALTAATNLMRYWSFSLFFIVSELWASAGVPLLFWQCANDVTPMAQAKRFYPLFAVTGNLAPIVSGKVMSKVISLQKTKDD--IGFGATLK 569          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12889.2177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI02_9PHAE1.120e-13799.01ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XUF9_9STRA2.240e-8867.98ADP,ATP carrier protein n=1 Tax=Fibrocapsa japonic... [more]
A0A7S3UWV3_HETAK5.090e-8467.98ADP,ATP carrier protein (Fragment) n=1 Tax=Heteros... [more]
W7T7G0_9STRA2.870e-7562.19ADP,ATP carrier protein n=2 Tax=Monodopsidaceae Ta... [more]
K0RFM5_THAOC1.200e-6957.35ADP,ATP carrier protein n=1 Tax=Thalassiosira ocea... [more]
A0A482SNG1_9ARCH1.330e-6957.50NTP/NDP exchange transporter n=1 Tax=archaeon TaxI... [more]
B8LCT8_THAPS3.620e-6555.07ADP,ATP carrier protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2XIS6_9STRA3.900e-6454.15ADP,ATP carrier protein (Fragment) n=1 Tax=Attheya... [more]
A0A7S2WMM2_9STRA6.180e-6453.47ADP,ATP carrier protein n=1 Tax=Eucampia antarctic... [more]
A0A7S2PNE8_9STRA6.530e-6355.00ADP,ATP carrier protein (Fragment) n=1 Tax=Skeleto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12889contigE-fasciculatus_F_contig12889:2..3535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.6
Seed ortholog evalue4.4e-112
Seed eggNOG ortholog2880.D7FVM4
KEGG koko:K03301
KEGG TC2.A.12
EggNOG free text desc.ATP:ADP antiporter activity
EggNOG OGs2QSRY@2759,COG3202@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionADP/ATP carrier protein
Ec32 orthologEc-01_009440.1
Exons5
Model size639
Cds size639
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12889.2177.1prot_E-fasciculatus_F_contig12889.2177.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12889 2..3535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.9606292-CDS-E-fasciculatus_F_contig12889:1..811622927791.9606292-CDS-E-fasciculatus_F_contig12889:1..81Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 2..81 +
1695995696.577134-CDS-E-fasciculatus_F_contig12889:1..811695995696.577134-CDS-E-fasciculatus_F_contig12889:1..81Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 2..81 +
1622927791.9763718-CDS-E-fasciculatus_F_contig12889:1062..11231622927791.9763718-CDS-E-fasciculatus_F_contig12889:1062..1123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 1063..1123 +
1695995696.59933-CDS-E-fasciculatus_F_contig12889:1062..11231695995696.59933-CDS-E-fasciculatus_F_contig12889:1062..1123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 1063..1123 +
1622927791.9938533-CDS-E-fasciculatus_F_contig12889:1619..17911622927791.9938533-CDS-E-fasciculatus_F_contig12889:1619..1791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 1620..1791 +
1695995696.6088483-CDS-E-fasciculatus_F_contig12889:1619..17911695995696.6088483-CDS-E-fasciculatus_F_contig12889:1619..1791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 1620..1791 +
1622927792.0097501-CDS-E-fasciculatus_F_contig12889:2291..23921622927792.0097501-CDS-E-fasciculatus_F_contig12889:2291..2392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 2292..2392 +
1695995696.6172547-CDS-E-fasciculatus_F_contig12889:2291..23921695995696.6172547-CDS-E-fasciculatus_F_contig12889:2291..2392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 2292..2392 +
1622927792.025616-CDS-E-fasciculatus_F_contig12889:3310..35351622927792.025616-CDS-E-fasciculatus_F_contig12889:3310..3535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 3311..3535 +
1695995696.6272957-CDS-E-fasciculatus_F_contig12889:3310..35351695995696.6272957-CDS-E-fasciculatus_F_contig12889:3310..3535Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12889 3311..3535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12889.2177.1

>prot_E-fasciculatus_F_contig12889.2177.1 ID=prot_E-fasciculatus_F_contig12889.2177.1|Name=mRNA_E-fasciculatus_F_contig12889.2177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=213bp
IEKHELRKFLTMSVMMFAIIYVFTMTRDTKDALVVTNCGAEAIAFLKVYA
VLPAAALFMIGYNWLSNHVGSRALFHMTITPFFAFYALFAFVMYPMRGVL
HHSAGAMGKDEHVFSHMINMGRFWMFSLYYVVSELWGSAGVPLLFWTCAN
EVTPMTQAKRFYPLFAILGNLGPIASGQTMAYVSRNRPAGMDAEMAFERT
LKVCIPNPPCYC*
back to top

mRNA from alignment at E-fasciculatus_F_contig12889:2..3535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12889.2177.1 ID=mRNA_E-fasciculatus_F_contig12889.2177.1|Name=mRNA_E-fasciculatus_F_contig12889.2177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12889:2..3535+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCGAGAAGCACGAGCTGCGGAAGTTCCTGACCATGTCGGTGATGATGTT CGCCATCATCTACGTCTTCACCATGACCAGGTAATGATTTGTGAAAAGGT GGCGGGCATGTGGTGTTTTTTTTTATAGTGTCGTGAAAGTGAGTTTAGGT GTTCCTATCGTGAGCGCGGGCTTCGTCCAATTCAGCGGACCAGGAACAAT GCATCGAACACGAAACCGCCAAGGCTTTCTCAATCGCTTTGTCCCTCGAC GTGAAAGTGAGTTTAGGTATTCCTATCGTGAGCGCGGGATTCGTCCAATT CAGCGGACCAGGAACAACGCATCGAACACGAAACCGCCAAGGCTTTCTCA ATCGCTTTGTCCCTCGAGAGATGGAAGCGTGCGTGTGTTTCTTTTCTTTG TTGTTGGCAAATAACGCTGTTACGACGGGATCGAGGATAAATAAGGATAT GACGGATGCTGTCGTCGCTGCCCAAACACAGTTAATTACAAGGTGCTGCC TTTGTCTCTTGGCGCTCCATTGTCAACCTGCGAACTTGATGTTCGGCCTG CGAAAATGTCAATGGAAGAGGCGTGTGTGGACCGGGCAAGTGATGCAACC ACGACGATGAAACCGTACAGCACGAGCGAAGCGGTACAGCCAGGCATCCG TTTTTGTTATCCCAAAGGGCGTGGTCCCCCGCTTGCTGCTTGTCGGCTCC GCCGCGCTGTTGACGCTGCTGTGTTGTAGACGACGCCTGTGTGTGTGGGT GTATTCTTCGGGAGCATCGATCGCGCTTTAGCCGGCTAGCCAATGACAAT ATGCCAGTCTTGTAGCGGGATCAAAAACACGAGCACTTTCTAGTCAAAGG GTAAGGGTTTTACCGACAGGCGGGTGTGTGTCTTTAATACTAGCATCGGC CGCGCTAACCGGCTGACCAACGAAAATACGTCAGCGCCAGCGGATAAAAT CAAGGTCCCTGGAAGGAGGCCAATACTCGAAAATGCGTGTGCGCTTGCGT TTTTTTTGTCGCCGCTATTTACGTGTACTACGTTCTTCTGCGGGTGTTTT TTCTGTGGCAGGGACACGAAGGACGCACTGGTGGTGACCAACTGCGGCGC GGAGGCAATTGCCTTCCTGAAGGTATGTAGCGTAATTAGAGCGCCACAGC GGAGACAAATACGCCGATGAGCGTTTCGCGACCTTGTGGCCTGCCGCGCG TTCTTTCTTAGTTGTCCTGTGGGGCCAGTCTCTCTCGTTTTTATTTTTTT CGTTTGTTCATCACTTTAATAAATCAGTCTGGCGTTCGTCGCGGTGTTCC TCCCAAATGCGTGTGTCGGTTTCAATGCGGGGCTCTCTTCACCGTCGAGA CCTCCGAAAAGACAGTAGCAGACGTTCACAAGACTATAGCAGAAGGTAGC CACTGCTGTTTAGGAGTCAAGATGGCGATAACGCCGAAGCCGGACTCACG GCTGCGATGGCCGTTGCCGTGGGCGGACTTTTCAGCTATGCGTGTACGCA ACGCCCAATAAAACAACCCCGAAATTGCGCCACCGTCTCCTGGTATGTAC CTGTTTTAGCAAAGCACGAGAAAAGCCTTGACGAGCTGAAACCCAACATT TCTGACACACACACACAGGTCTACGCGGTGCTGCCTGCGGCGGCATTGTT CATGATCGGCTACAACTGGCTGTCCAACCACGTCGGGAGCCGAGCGCTGT TCCACATGACCATCACGCCCTTCTTTGCCTTCTATGCGCTGTTTGCCTTC GTCATGTACCCCATGAGAGGGGTCTTGCACCACTCGGCTGGTGCGTCACC GTTGCTGCTGCTGCCGCTGCTGCTGTTGTTGTTGTTGTGGTTGTTTGTTG CACTTTGTGTTTTGCTGTGGTCGTCGTGATGCTGGCAATAACCTTACCAA GTACAGAAGCAGTGGCAGCAGTGTGTTGCGCCCCCCTCTCTCTCGAAGTA CAAGCCTCATTAGGAATTCACTTTCCCAACAGCACATATAATACTTGCAG GGTCGTATCACACCACGATTACGGTGATGATCGGAGGTCTTGTACTACCG TCGACAACTCGTGTTGTGTCGATGCTGATTTTGGTCACATGGTGATGATG ACCATGATCAGCTCTCCCGGCTAAGTCTTAACCTTAACCTTGCCTGAGAC AGTAAGCGCCAAAACGAACGCGCGGTAGTAGTTGTCAAGCCCTTCCTTGT TGTGGCCGTGACACGCGTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCTGC TGCTGCTGGTGGTACTGCCGCATCGTATGTTTGTTCTCAGGGGCGATGGG CAAAGACGAGCACGTGTTCTCGCACATGATCAACATGGGCCGCTTCTGGA TGTTCTCGCTTTACTACGTGGTCTCGGAGCTGTGGGGCTCGGTAAGATGG TGTATTTTCACGTAGGAGGTACATGTATCTAGTGTGTGGTCAATCTCCTC CCCCGGAAATGGAGTAGAGTTGTCGCGTGAGACATGTAGCGGTGACGGGG TGGATTGTAGGCAACTATCCCTGTGGCGGTGTGCAGCAACTCACGGAATG ATTGCCGTTACGTGTTACGTACACTTGTGCTGGAAGAAGAGAAAGGTGGC GCTATACTGTATGTAGCCAATGCGGGAGAGCGTCGGCCACCTACATAGGA ACGTCCTTTAGATGTCCTCATTTTGGTGTCGACAGCAGTCCTTGAGGGGA CGAGGGTGCGGGGAAAACGGAATGTAGTTTCTGTTGTTACTGGGGCGTCT AGGAAGCGAGATTCTGCGGGACATTGCTCCTGAATACATCGGCTGTTGCG TTGGGCCGAACGCTATGGTTGATCCTGGCGAACAGCTCGTTCCAGATAGC ATCATCCGGTTCTCGACCGTCCTCAATCACCATACAGCACCGTACCGTAG TGTTCGCTTCTTGGTCATAGTCCTCCTCCGTTGTCTTGGAACGGTCGTTA TCCTTATCCTTGGAAGGTTTTTGTTGTTGTATTTCTTGACAAGAGCTTGC GAAAGCCGCAAACGCCGCGCCCCGCCGTGCGATAATCGCGCGCTGCTTCT TTGCTGCTGACAAGAATAATACCAACGGTCCTGTCCGACGGTCCTGTCCG CTGCTTCCTGCTGTTGCGTTGGTGCTCGCTGCTCCTGCTGCTGCTTCACT TCTCCTGCTGCTGCTTTTGCTTGTCGCTGTTGGTGGCTTTTGATGCTGTT GCGGGTCGATGTACCACCACCGCCGTCGTCATTGCCCTCCCCCTACTATA CACAACTACCGCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCGTGTCC CTCCTCCAGGCGGGCGTGCCGCTCTTGTTCTGGACGTGCGCGAACGAGGT GACCCCCATGACGCAGGCCAAGCGCTTCTACCCGCTCTTCGCCATCCTCG GTAACCTGGGCCCTATCGCCTCGGGGCAGACGATGGCCTACGTTAGCCGC AACCGCCCGGCGGGGATGGACGCTGAGATGGCCTTCGAGCGCACGCTCAA GGTATGTATCCCTAACCCTCCTTGCTACTGTTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12889:2..3535+

>mRNA_E-fasciculatus_F_contig12889.2177.1 ID=mRNA_E-fasciculatus_F_contig12889.2177.1|Name=mRNA_E-fasciculatus_F_contig12889.2177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12889:2..3535+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCGAGAAGCACGAGCTGCGGAAGTTCCTGACCATGTCGGTGATGATGTT
CGCCATCATCTACGTCTTCACCATGACCAGATCGAGAAGCACGAGCTGCG
GAAGTTCCTGACCATGTCGGTGATGATGTTCGCCATCATCTACGTCTTCA
CCATGACCAGGGACACGAAGGACGCACTGGTGGTGACCAACTGCGGCGCG
GAGGCAATTGCCTTCCTGAAGGGACACGAAGGACGCACTGGTGGTGACCA
ACTGCGGCGCGGAGGCAATTGCCTTCCTGAAGGTCTACGCGGTGCTGCCT
GCGGCGGCATTGTTCATGATCGGCTACAACTGGCTGTCCAACCACGTCGG
GAGCCGAGCGCTGTTCCACATGACCATCACGCCCTTCTTTGCCTTCTATG
CGCTGTTTGCCTTCGTCATGTACCCCATGAGAGGGGTCTTGCACCACTCG
GCTGGTCTACGCGGTGCTGCCTGCGGCGGCATTGTTCATGATCGGCTACA
ACTGGCTGTCCAACCACGTCGGGAGCCGAGCGCTGTTCCACATGACCATC
ACGCCCTTCTTTGCCTTCTATGCGCTGTTTGCCTTCGTCATGTACCCCAT
GAGAGGGGTCTTGCACCACTCGGCTGGGGCGATGGGCAAAGACGAGCACG
TGTTCTCGCACATGATCAACATGGGCCGCTTCTGGATGTTCTCGCTTTAC
TACGTGGTCTCGGAGCTGTGGGGCTCGGGGCGATGGGCAAAGACGAGCAC
GTGTTCTCGCACATGATCAACATGGGCCGCTTCTGGATGTTCTCGCTTTA
CTACGTGGTCTCGGAGCTGTGGGGCTCGGCGGGCGTGCCGCTCTTGTTCT
GGACGTGCGCGAACGAGGTGACCCCCATGACGCAGGCCAAGCGCTTCTAC
CCGCTCTTCGCCATCCTCGGTAACCTGGGCCCTATCGCCTCGGGGCAGAC
GATGGCCTACGTTAGCCGCAACCGCCCGGCGGGGATGGACGCTGAGATGG
CCTTCGAGCGCACGCTCAAGGTATGTATCCCTAACCCTCCTTGCTACTGT
TGAGCGGGCGTGCCGCTCTTGTTCTGGACGTGCGCGAACGAGGTGACCCC
CATGACGCAGGCCAAGCGCTTCTACCCGCTCTTCGCCATCCTCGGTAACC
TGGGCCCTATCGCCTCGGGGCAGACGATGGCCTACGTTAGCCGCAACCGC
CCGGCGGGGATGGACGCTGAGATGGCCTTCGAGCGCACGCTCAAGGTATG
TATCCCTAACCCTCCTTGCTACTGTTGA
back to top