mRNA_E-fasciculatus_F_contig12883.2173.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12883.2173.1
Unique NamemRNA_E-fasciculatus_F_contig12883.2173.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12883.2173.1 vs. uniprot
Match: D8LTT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT2_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 1.540e-122
Identity = 249/329 (75.68%), Postives = 258/329 (78.42%), Query Frame = 1 
Query:   67 MADDCDGAKGHDGFEGPASVGADSATAAAIKSDGDSIYHRLIKEQRLELEQLKRAAREASPSSSSSRIRHAFERPSSATINGAEFPLPPSPTSNTRPRIVHSDTHVSGDGGGESGSVIGSASYVRELSAGGPHYYGSSSTADGDRLGGGAGGQRYAGVGGVGGGFLAAITRERTDKSRSGADXXXXXXXXXXXXXASAEGFGGDSGRYLRGYRDPFKAVADSDTGRKSSRGAVNAQGVVFSAADNYHVEESSSRGTAVGFDPIQTGGXXXXXXXXXGEQHP-VEKQQSLTAASRRGSRGDETTATAAS-----------KAHTTPRTTA 1017
            MADDCDGAKGHDGFEG A VGADSA AA+IK DGDSIYHRLIKEQRLELEQLKRAAREASPS S  +IRHA ERPSSAT+NGAE  LPPSPTS TR RIV+SDTHVS  GGG+ G V GSASYV ELSAGG H YGSS TADGDRLGGGAG QRYAGVG +GGGFLAAITRERTDKSR GA              ASAEGFGGDSGR LRG RDPFKAVADS TGR  SRGAV+AQGVVFSAADNYH EE SS GTAVGFDP+QTG XXXXXXXXX      VEKQ SLTA SRRGSRGDE   TAA+           KAH TP TTA
Sbjct:    1 MADDCDGAKGHDGFEGQAGVGADSAAAASIKDDGDSIYHRLIKEQRLELEQLKRAAREASPSRS--KIRHALERPSSATLNGAEDTLPPSPTSITRQRIVYSDTHVSDGGGGDRGDVTGSASYVGELSAGGRHNYGSS-TADGDRLGGGAGVQRYAGVGDIGGGFLAAITRERTDKSRGGAGTTRGGEESGGR--ASAEGFGGDSGRSLRGVRDPFKAVADSGTGRSGSRGAVDAQGVVFSAADNYHAEERSSGGTAVGFDPMQTGXXXXXXXXXXXXXXXXVEKQPSLTAMSRRGSRGDEKITTAAAYATGEASGTAPKAHATPGTTA 324
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BLAST of mRNA_E-fasciculatus_F_contig12883.2173.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 7.520e-111
Identity = 233/329 (70.82%), Postives = 244/329 (74.16%), Query Frame = 1 
Query:   67 MADDCDGAKGHDGFEGPASVGADSATAAAIKSDGDSIYHRLIKEQRLELEQLKRAAREASPSSSSSRIRHAFERPSSATINGAEFPLPPSPTSNTRPRIVHSDTHVSGDGGGESGSVIGSASYVRELSAGGPHYYGSSSTADGDRLGGGAGGQRYAGVGGVGGGFLAAITRERTDKSRSGADXXXXXXXXXXXXXASAEGFGGDSGRYLRGYRDPFKAVADSDTGRKSSRGAVNAQGVVFSAADNYHVEESSSRGTAVGFDPIQTGGXXXXXXXXXGEQHP--VEKQQSLTAASRRGSRGDETTATAAS----------KAHTTPRTTA 1017
            MADD D AK HD FEGP  V ADSA A  IK DGDSIYHRLIKEQR ELEQLKRAAREASPSS     +HA ERPSSAT+N AE  LPPSPTSN RPRIVHSDTH SG GGG+SG   GS SYV ELSAGG H+YGSS TADGDRLGGGA GQRYAGVG VGGGFLAAITRERTDKSRSGA              ASA+G GGDSGR+LRG RDP KA ADSDTGR SSRGAV+AQ   FSAAD+YH +E SS GTAVGFDP+QTG XXXXXXXXX       VEKQ SLTA  RRGS+GDE T  AA           KAH TP TTA
Sbjct:    1 MADDFDSAKEHDDFEGPGGVVADSAAATTIKDDGDSIYHRLIKEQRFELEQLKRAAREASPSS-----KHALERPSSATLNDAEDTLPPSPTSNIRPRIVHSDTHASGGGGGDSGCETGSTSYVGELSAGGRHHYGSS-TADGDRLGGGAEGQRYAGVGDVGGGFLAAITRERTDKSRSGAGTKRGEEESGGR--ASADGLGGDSGRFLRGVRDPSKAAADSDTGRISSRGAVDAQLAAFSAADSYHAKERSSGGTAVGFDPLQTGXXXXXXXXXXXXXXXXXVEKQPSLTAMLRRGSKGDEITTAAACATGKASGTAPKAHPTPGTTA 321
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12883.2173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT2_ECTSI1.540e-12275.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC5_9PHAE7.520e-11170.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12883contigE-fasciculatus_F_contig12883:1770..3705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002910.1
Exons2
Model size1017
Cds size1017
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.622423-CDS-E-fasciculatus_F_contig12883:1769..20351622927791.622423-CDS-E-fasciculatus_F_contig12883:1769..2035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12883 1770..2035 +
1695995696.4063513-CDS-E-fasciculatus_F_contig12883:1769..20351695995696.4063513-CDS-E-fasciculatus_F_contig12883:1769..2035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12883 1770..2035 +
1622927791.6363273-CDS-E-fasciculatus_F_contig12883:2954..37051622927791.6363273-CDS-E-fasciculatus_F_contig12883:2954..3705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12883 2955..3705 +
1695995696.4181404-CDS-E-fasciculatus_F_contig12883:2954..37051695995696.4181404-CDS-E-fasciculatus_F_contig12883:2954..3705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12883 2955..3705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12883.2173.1prot_E-fasciculatus_F_contig12883.2173.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12883 1770..3705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12883.2173.1

>prot_E-fasciculatus_F_contig12883.2173.1 ID=prot_E-fasciculatus_F_contig12883.2173.1|Name=mRNA_E-fasciculatus_F_contig12883.2173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=339bp
MCPLPVRSFAVAAFAQAVYSSSMADDCDGAKGHDGFEGPASVGADSATAA
AIKSDGDSIYHRLIKEQRLELEQLKRAAREASPSSSSSRIRHAFERPSSA
TINGAEFPLPPSPTSNTRPRIVHSDTHVSGDGGGESGSVIGSASYVRELS
AGGPHYYGSSSTADGDRLGGGAGGQRYAGVGGVGGGFLAAITRERTDKSR
SGADTTRGGREEESGGRASAEGFGGDSGRYLRGYRDPFKAVADSDTGRKS
SRGAVNAQGVVFSAADNYHVEESSSRGTAVGFDPIQTGGGGGNISRRRGE
QHPVEKQQSLTAASRRGSRGDETTATAASKAHTTPRTTA
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mRNA from alignment at E-fasciculatus_F_contig12883:1770..3705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12883.2173.1 ID=mRNA_E-fasciculatus_F_contig12883.2173.1|Name=mRNA_E-fasciculatus_F_contig12883.2173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1936bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12883:1770..3705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCCCGTTGCCCGTTCGTTCTTTTGCAGTTGCTGCGTTTGCCCAAGC
TGTGTACAGCAGCAGCATGGCAGACGACTGTGATGGTGCCAAAGGACACG
ATGGTTTCGAAGGGCCAGCTAGTGTCGGTGCCGATTCCGCCACTGCGGCT
GCTATTAAGAGCGATGGAGACAGTATTTACCACCGTTTGATAAAGGAGCA
GCGACTCGAGCTGGAACAGCTCAAGAGGGCGGCGAGGGAGGCTTCGCCCA
GCAGTAGCAGTAGCAGGTGAGTGAAGCTCTTGGCATTGATAAAATACGGC
TGGTGGTACCATGTGTGGTGCTAGGTCTGTCGGAGAGGGTAGATCCGTAA
GTTGCGTCTACTTTGTAAGGTACACGCCGTGATATCTACTGCTGTTGTCC
GCCGCAGCAGCAGCCGTTATGAAATTCAAACTCTGTTGTACCGCCGTTGT
GGTTCAGTACATACATACCCTGACAGCGTGGACCGGGGGGGGATATACTT
GAAGTATGTTGTCGACGGCAAGTAATGCGTGGTGTCCTTTGCGTCTTGTG
GCTATTGCTAGCACGATGTAGCAGGGGCAGACCCTGCGTATGATGTATGA
TCAGGTTGACGACACCAACACAACAACGTACTGTACATTGTACAGCTGTG
ATGTTCATACGCATCACCACAGATCCGTAGATATGCATACAATACACCCA
ACGCGGGACACGACACAGTCATTTTCATTTTCGACGGCATGGTATCCATG
CACGCACGTCCGACCGCTGCAGAAGCAACAGCCATGCAACACGCCGGCGC
CGGCGCATCAGCCGGTGACCGCGACACAAGGCCAGTGCTCCGTTCATCTT
TCGCATCCTCTCGCCTACAGTAGTTGCCGTGCTGCGTACGAGCTTGGGGA
TGGGATACTGCTGTACCCCGCTTCAGTGGGTCAAGCCACACTGGCTCTAT
ATCATCTCCGTTTTGACCCCGATGTCTACAGCAGTATTAGACTACACCAT
GTTCTCCCGCCCCCTTTTTCCGTCTTCTCATGCATGCAAGCGCGGAACAA
GTTAACCTCTATGCACAGACAAATAGCCCAGGACAAAATCCGATTTTCAA
CTCATACCCTGTCCTGTCGGACCGATCCATCCGGCCTGCCTGTGTCCGCG
CGTGGTTTGCACCCCTCTCTTGCTTGCCCGGAAAGGATTAGGCATGCATT
TGAGCGACCTTCCTCCGCCACCATCAACGGCGCCGAATTCCCGCTACCAC
CGTCACCCACGAGCAATACCAGACCCCGGATAGTTCACAGCGATACCCAC
GTCAGTGGCGACGGCGGCGGTGAAAGTGGTAGTGTCATCGGTAGTGCATC
GTATGTCAGGGAGCTTTCGGCGGGAGGCCCGCACTACTACGGTAGTAGTA
GTACCGCCGACGGTGATCGCCTCGGCGGCGGAGCTGGGGGCCAGCGGTAT
GCCGGAGTCGGCGGCGTTGGTGGAGGTTTCTTGGCGGCGATAACGCGGGA
GAGGACAGATAAGTCGCGCAGTGGGGCCGATACCACGCGTGGGGGGCGAG
AAGAGGAGAGCGGCGGCCGTGCTAGCGCGGAAGGCTTTGGCGGCGACAGC
GGGCGATACTTGCGAGGCTATCGCGATCCTTTCAAGGCCGTTGCGGATAG
CGACACTGGCCGGAAGAGTAGCAGGGGGGCTGTCAATGCGCAAGGTGTTG
TTTTTTCGGCAGCCGACAACTATCATGTCGAGGAAAGCTCGTCTAGGGGC
ACGGCAGTCGGGTTTGACCCAATACAGACCGGTGGTGGTGGTGGTAACAT
TTCCCGGCGACGGGGAGAACAACACCCAGTCGAGAAGCAGCAATCGTTGA
CGGCCGCGTCGCGGCGCGGGAGCAGAGGCGACGAGACCACAGCAACGGCT
GCCTCGAAGGCGCACACGACACCAAGAACAACGGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12883:1770..3705+

>mRNA_E-fasciculatus_F_contig12883.2173.1 ID=mRNA_E-fasciculatus_F_contig12883.2173.1|Name=mRNA_E-fasciculatus_F_contig12883.2173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2034bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12883:1770..3705+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCCCGTTGCCCGTTCGTTCTTTTGCAGTTGCTGCGTTTGCCCAAGC
TGTGTACAGCAGCAGCATGGCAGACGACTGTGATGGTGCCAAAGGACACG
ATGGTTTCGAAGGGCCAGCTAGTGTCGGTGCCGATTCCGCCACTGCGGCT
GCTATTAAGAGCGATGGAGACAGTATTTACCACCGTTTGATAAAGGAGCA
GCGACTCGAGCTGGAACAGCTCAAGAGGGCGGCGAGGGAGGCTTCGCCCA
GCAGTAGCAGTAGCAGATGTGCCCGTTGCCCGTTCGTTCTTTTGCAGTTG
CTGCGTTTGCCCAAGCTGTGTACAGCAGCAGCATGGCAGACGACTGTGAT
GGTGCCAAAGGACACGATGGTTTCGAAGGGCCAGCTAGTGTCGGTGCCGA
TTCCGCCACTGCGGCTGCTATTAAGAGCGATGGAGACAGTATTTACCACC
GTTTGATAAAGGAGCAGCGACTCGAGCTGGAACAGCTCAAGAGGGCGGCG
AGGGAGGCTTCGCCCAGCAGTAGCAGTAGCAGGATTAGGCATGCATTTGA
GCGACCTTCCTCCGCCACCATCAACGGCGCCGAATTCCCGCTACCACCGT
CACCCACGAGCAATACCAGACCCCGGATAGTTCACAGCGATACCCACGTC
AGTGGCGACGGCGGCGGTGAAAGTGGTAGTGTCATCGGTAGTGCATCGTA
TGTCAGGGAGCTTTCGGCGGGAGGCCCGCACTACTACGGTAGTAGTAGTA
CCGCCGACGGTGATCGCCTCGGCGGCGGAGCTGGGGGCCAGCGGTATGCC
GGAGTCGGCGGCGTTGGTGGAGGTTTCTTGGCGGCGATAACGCGGGAGAG
GACAGATAAGTCGCGCAGTGGGGCCGATACCACGCGTGGGGGGCGAGAAG
AGGAGAGCGGCGGCCGTGCTAGCGCGGAAGGCTTTGGCGGCGACAGCGGG
CGATACTTGCGAGGCTATCGCGATCCTTTCAAGGCCGTTGCGGATAGCGA
CACTGGCCGGAAGAGTAGCAGGGGGGCTGTCAATGCGCAAGGTGTTGTTT
TTTCGGCAGCCGACAACTATCATGTCGAGGAAAGCTCGTCTAGGGGCACG
GCAGTCGGGTTTGACCCAATACAGACCGGTGGTGGTGGTGGTAACATTTC
CCGGCGACGGGGAGAACAACACCCAGTCGAGAAGCAGCAATCGTTGACGG
CCGCGTCGCGGCGCGGGAGCAGAGGCGACGAGACCACAGCAACGGCTGCC
TCGAAGGCGCACACGACACCAAGAACAACGGCCGATTAGGCATGCATTTG
AGCGACCTTCCTCCGCCACCATCAACGGCGCCGAATTCCCGCTACCACCG
TCACCCACGAGCAATACCAGACCCCGGATAGTTCACAGCGATACCCACGT
CAGTGGCGACGGCGGCGGTGAAAGTGGTAGTGTCATCGGTAGTGCATCGT
ATGTCAGGGAGCTTTCGGCGGGAGGCCCGCACTACTACGGTAGTAGTAGT
ACCGCCGACGGTGATCGCCTCGGCGGCGGAGCTGGGGGCCAGCGGTATGC
CGGAGTCGGCGGCGTTGGTGGAGGTTTCTTGGCGGCGATAACGCGGGAGA
GGACAGATAAGTCGCGCAGTGGGGCCGATACCACGCGTGGGGGGCGAGAA
GAGGAGAGCGGCGGCCGTGCTAGCGCGGAAGGCTTTGGCGGCGACAGCGG
GCGATACTTGCGAGGCTATCGCGATCCTTTCAAGGCCGTTGCGGATAGCG
ACACTGGCCGGAAGAGTAGCAGGGGGGCTGTCAATGCGCAAGGTGTTGTT
TTTTCGGCAGCCGACAACTATCATGTCGAGGAAAGCTCGTCTAGGGGCAC
GGCAGTCGGGTTTGACCCAATACAGACCGGTGGTGGTGGTGGTAACATTT
CCCGGCGACGGGGAGAACAACACCCAGTCGAGAAGCAGCAATCGTTGACG
GCCGCGTCGCGGCGCGGGAGCAGAGGCGACGAGACCACAGCAACGGCTGC
CTCGAAGGCGCACACGACACCAAGAACAACGGCC
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