mRNA_E-fasciculatus_F_contig12875.2168.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12875.2168.1
Unique NamemRNA_E-fasciculatus_F_contig12875.2168.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12875.2168.1 vs. uniprot
Match: D7FQY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY9_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 1.990e-124
Identity = 177/204 (86.76%), Postives = 191/204 (93.63%), Query Frame = 1 
Query:    4 KILRESNYWDELANFFSGRKLHLYLTGPEMSGKDGVFHKKPGREEGQADGPRMKVECWKANGVDFFLQKGRLATFRKEETVVVGLNCGFGMAGHHIITNPSPKQALPSNEVLWKWLPTLYFFAALDLPLMMTASSVPDVSTARLMLQYVVGTYEVVRIHPSPVPFESTVPGDQVVQANSHCILVRGQRPGFHFSVLVDPTVGER 615
            KILRE+NYWDEL+NFFSGR+LHLYLTGPEMSGKDGVFH KPGREEGQADGPRM+VECWKANGVDFFLQKGRLATFRKE+TVVVGLNCGFGMAGHH+I N SPKQALPSNEVLWKW+PTLYFFAALDLPLM+TASS+ D +TAR MLQYVVGTYE+VRI  SPVPF+STVPGDQVVQANSHCILVRGQRPGF+FSV V P +  R
Sbjct:  194 KILRETNYWDELSNFFSGRELHLYLTGPEMSGKDGVFHTKPGREEGQADGPRMRVECWKANGVDFFLQKGRLATFRKEDTVVVGLNCGFGMAGHHVIKNQSPKQALPSNEVLWKWIPTLYFFAALDLPLMITASSLADATTARSMLQYVVGTYELVRITLSPVPFQSTVPGDQVVQANSHCILVRGQRPGFNFSVQVLPDIDPR 397
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BLAST of mRNA_E-fasciculatus_F_contig12875.2168.1 vs. uniprot
Match: A0A0P1B1J6_PLAHL (Mynd finger family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1J6_PLAHL)

HSP 1 Score: 54.7 bits (130), Expect = 2.360e-5
Identity = 40/150 (26.67%), Postives = 69/150 (46.00%), Query Frame = 1 
Query:    4 KILRESNYWDELANFFSGRKLHLYLTGPEMSGKDGVFHKKPGREEGQADGPRMKVECWKANGVDFFLQ----KGRLATFRKEE---------TVVVGLNCGFG--MAGHHIITNPSPKQALPSNEVLWKWLPTLYFFAALDLPLMMTASS 408
            ++LR +NYW+E+++FF+  K+ L+  GPE+                + D  R+       N + F L+    KG   +F+K +         +V+VG N GFG  +  H              +E+L+ WLP LY  A  ++P + T ++
Sbjct:  136 RVLRITNYWNEISSFFAKAKVTLFFIGPEVD---------------EPDADRIN------NALPFNLKVHHFKGTFGSFQKSQLYGECAPQASVIVGYNTGFGNFVDSHR-------------HELLFSWLPDLYRIAESNIPAIFTCAN 251
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12875.2168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQY9_ECTSI1.990e-12486.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0P1B1J6_PLAHL2.360e-526.67Mynd finger family protein n=1 Tax=Plasmopara hals... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12875contigE-fasciculatus_F_contig12875:340..3262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.2
Seed ortholog evalue2e-101
Seed eggNOG ortholog2880.D7FQY9
EggNOG OGs29R65@1,2RXAD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003220.1
Exons6
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12875.2168.1prot_E-fasciculatus_F_contig12875.2168.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12875 340..3262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927790.892727-CDS-E-fasciculatus_F_contig12875:339..4891622927790.892727-CDS-E-fasciculatus_F_contig12875:339..489Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 340..489 +
1695995695.9903135-CDS-E-fasciculatus_F_contig12875:339..4891695995695.9903135-CDS-E-fasciculatus_F_contig12875:339..489Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 340..489 +
1622927790.904669-CDS-E-fasciculatus_F_contig12875:1068..11271622927790.904669-CDS-E-fasciculatus_F_contig12875:1068..1127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 1069..1127 +
1695995695.9999633-CDS-E-fasciculatus_F_contig12875:1068..11271695995695.9999633-CDS-E-fasciculatus_F_contig12875:1068..1127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 1069..1127 +
1622927790.9151802-CDS-E-fasciculatus_F_contig12875:1455..15801622927790.9151802-CDS-E-fasciculatus_F_contig12875:1455..1580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 1456..1580 +
1695995696.008492-CDS-E-fasciculatus_F_contig12875:1455..15801695995696.008492-CDS-E-fasciculatus_F_contig12875:1455..1580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 1456..1580 +
1622927790.9264855-CDS-E-fasciculatus_F_contig12875:2016..20971622927790.9264855-CDS-E-fasciculatus_F_contig12875:2016..2097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 2017..2097 +
1695995696.0190868-CDS-E-fasciculatus_F_contig12875:2016..20971695995696.0190868-CDS-E-fasciculatus_F_contig12875:2016..2097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 2017..2097 +
1622927790.9426003-CDS-E-fasciculatus_F_contig12875:2735..28421622927790.9426003-CDS-E-fasciculatus_F_contig12875:2735..2842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 2736..2842 +
1695995696.0271394-CDS-E-fasciculatus_F_contig12875:2735..28421695995696.0271394-CDS-E-fasciculatus_F_contig12875:2735..2842Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 2736..2842 +
1622927790.9577212-CDS-E-fasciculatus_F_contig12875:3169..32621622927790.9577212-CDS-E-fasciculatus_F_contig12875:3169..3262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 3170..3262 +
1695995696.035271-CDS-E-fasciculatus_F_contig12875:3169..32621695995696.035271-CDS-E-fasciculatus_F_contig12875:3169..3262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12875 3170..3262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12875.2168.1

>prot_E-fasciculatus_F_contig12875.2168.1 ID=prot_E-fasciculatus_F_contig12875.2168.1|Name=mRNA_E-fasciculatus_F_contig12875.2168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=205bp
KKILRESNYWDELANFFSGRKLHLYLTGPEMSGKDGVFHKKPGREEGQAD
GPRMKVECWKANGVDFFLQKGRLATFRKEETVVVGLNCGFGMAGHHIITN
PSPKQALPSNEVLWKWLPTLYFFAALDLPLMMTASSVPDVSTARLMLQYV
VGTYEVVRIHPSPVPFESTVPGDQVVQANSHCILVRGQRPGFHFSVLVDP
TVGER
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mRNA from alignment at E-fasciculatus_F_contig12875:340..3262+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12875.2168.1 ID=mRNA_E-fasciculatus_F_contig12875.2168.1|Name=mRNA_E-fasciculatus_F_contig12875.2168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2923bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12875:340..3262+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGAAAATCCTGAGAGAGAGCAACTACTGGGACGAGCTAGCCAACTTTTT
CAGCGGGCGGAAGTTGCACCTGTACCTGACAGGCCCCGAGATGAGCGGCA
AGGACGGCGTGTTCCACAAGAAGCCCGGCCGAGAGGAAGGACAAGCTGAC
GTGAGGCAGACGGGGAGATTTGAGAACGGTTCCGAGGATGGTTTGGTTCT
AGTCAGTCAATACTACGAGTTCGCTGAGAATGGTTTGGTTCCAGTTAATC
CATACTACGAGCTTACTGATGATGGTTTGGTTCCAGTCATAAGAGCTTGC
TTACCGAGCACAGCCCCACAGCACAGAAGCACCTGGTATCATGTGTCACT
ACGTTGCGAAGTATTTGTGTGTAAGAAGGTGAAGATGTGTTGTGCAGTGT
TGTTCTGTCCAGGAGGGCAGCGCGTTCGAGTGAAACTGGTGATGAAGAAT
GTCCGGTTTCTCGATCTTGTCTGGAATCATGAGAAGACGGGTTGCCGCCC
CCGAGCAGTTGCACTGCGGTTGGTCGTGATACGGGGGGCGAGGTTTGTGT
CAGAATCTTCTCAGGAACCGCCGGTATCGTGTGTTACAATGTTGATTGAC
ATTTTGTCTGTCCGCGTGCCAAACGGACGTGCAAAAAAAACATTGGCGTA
GCCCCCCCTCACGCACACAGTTATTACCATACACCAACGCGCGAAGAACA
TTGTGCGATGGGCTTGCTGTGCTGTTTAGGGGCCGAGGATGAAGGTGGAG
TGCTGGAAGGCTAACGGAGTGGACTTCTTCCTGCAAAAGTAAGTCACTCC
CCGGCACAATGGTGCTGCTGCTAGTGGCCACGGCCCTCTTGTTGCTGTTC
GGCATGGCTGTGGCCATAGCGGCCTGTGGTGTGCGAACCATATGTTGACC
CTGTTCAGTGGCGTACCGGGTTGAGAAGTGCGCTGTGTGTCTCATAGTTG
GTCCGCTTCGAGGAAAGAGACGGTGAGCTGGGTCACCACGCCTATACCTA
TGCTTAAATGTCTCGTAGAGTATGCATAGAAAAATTGTAATTTGTTTGAT
GTCCTCTGGCACCTTGTCGAATAACTTTCTGCATCGTCGGTTGTGTCTCC
TTCTTTTGTGTGTCAGAGGCCGGTTGGCGACTTTTCGGAAGGAGGAGACG
GTGGTGGTGGGCCTGAACTGTGGCTTCGGGATGGCGGGGCACCACATCAT
CACAAACCCATCTCCCAAGCAGGCGCTACCGTCAAATGAAGGTGACTTAC
GTTTTCAATCAACCTATGATACGTGAAGTTCGACCAAACCGGAGCAAAAG
AGAGCCACATCCATACATCTCAGTACAATCTCGGATGCCGCAACAAACCG
ACCTAGCCGGAAGTTGTCTAACCTGGAGTGCTGTTTTGTGGCCGTACCCC
TTCTTTGCTTGAGTTGCGTGTGCGTGGCGTCACGCACAACCGCGCATTTC
ACGATTCTACCGCACGTAGTAGAAAATGGTACGATTTGATTGCAGGCTGT
TGACGTAGTTGAGCGTATTGTTACTGGAGCTGATTTCAGTGTTTAAGAAT
TGACGACAACAAGTAGTTTCGACTCTCTAAACCATTTTCCCGACTGAACG
TTACTCCGTTCATGTTCTTTTTGCCCCCGCCCCCCCGCCCGCGCGCGCCT
CCGCCTCGACGCGTCGTCTGCCGGCAGTCCTGTGGAAATGGCTCCCCACG
CTGTACTTTTTCGCGGCGCTCGACTTGCCCCTCATGATGACGGCCTCCTC
CGTGCCAGGTGCTACATTGCTACCATTCTCTTTGTTCTGTGTCACCTTAG
TCGATTACAATGGGAGTGCTTGGGTGCATGCTCGTTTAAGCTCTACTGTA
TTGAGATAAAATCTAGTCCTGTCTCCCCCTCTTGTTTCTTGCACTGCGTC
CAGTGTCCGCATATCCCACTCACCAATTTAGAGTGTTGTCAAGTGTTGCT
GTCGCTGTATCCTTCGTTTTGTATGTTACTCTGATGCTACGAACGCTCCG
TGCTTGTTTTTGCCGGGGCTCGTCGATTCCTCGCTACGACACCCAAACAC
AATATTGACGTGTGTGGCAACCTTGTCTAGCCTCCACCTCGCTACCAGCG
GCTCGTGTGTTCCTTCGGTTAGTGCACTCGCATATGCTGTTGTAGGACAC
AAGTACTGTTGGTTCCGTGTTGGAAGCAGCTTTGACCCCACCCTTCCTCC
GGCGCGGAGTTCTCATTGGCAGTAGGGAAATCATGTGTTTAATTATTGAT
GTTGTCGTTGATGATGACAGGAGAGGTGTTGCCCTTCGAAATAGTGCATG
GTCAATGGTAAAATTTCTAAGGCACGCAAAAACGAATACCCCCCATCCCC
CCGGCCCTACCGCAATGCGTTTTTTGCTCGACGTTCGACACCCAAGATGT
GAGCACGGCTAGATTGATGTTGCAGTACGTTGTCGGGACATACGAGGTGG
TACGCATCCACCCATCACCGGTACCGTTCGAGAGCACAGTCCCGGGGGAC
CAGGTATGTATTAAGATTATGTACAGGATGTTGTGACCAGCATACTGTAC
ACATGTGTCTCCAGGCACGACTGAAGTTCTTTGAATAGTCGATCAAGATC
GGTTGGTTGGCTGACGCGGTTGCTTGGTTATAATAGCCGGGTGATGATTT
GATTGCCTGTTTACATCACATTTTTAGTGTTCTCGCTCTGGTTTACCTGC
CTCCTCGCCGGCTCGTTCACCTCCTCACAGCCACTGGTTGATTCGCACGT
CGCGATGAGTATCTACGTGCTACACCAAAACATTAGTGTTTCGACTCGTG
TGTTGTTGTTGTGGTGTACTGACGCGTTAGGTCGTGCAGGCGAACAGCCA
CTGCATCTTAGTCCGAGGACAGCGACCGGGCTTCCATTTCTCCGTGCTGG
TGGATCCCACTGTAGGTGAGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12875:340..3262+

>mRNA_E-fasciculatus_F_contig12875.2168.1 ID=mRNA_E-fasciculatus_F_contig12875.2168.1|Name=mRNA_E-fasciculatus_F_contig12875.2168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1230bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12875:340..3262+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGAAAATCCTGAGAGAGAGCAACTACTGGGACGAGCTAGCCAACTTTTT
CAGCGGGCGGAAGTTGCACCTGTACCTGACAGGCCCCGAGATGAGCGGCA
AGGACGGCGTGTTCCACAAGAAGCCCGGCCGAGAGGAAGGACAAGCTGAC
AAGAAAATCCTGAGAGAGAGCAACTACTGGGACGAGCTAGCCAACTTTTT
CAGCGGGCGGAAGTTGCACCTGTACCTGACAGGCCCCGAGATGAGCGGCA
AGGACGGCGTGTTCCACAAGAAGCCCGGCCGAGAGGAAGGACAAGCTGAC
GGGCCGAGGATGAAGGTGGAGTGCTGGAAGGCTAACGGAGTGGACTTCTT
CCTGCAAAAGGGCCGAGGATGAAGGTGGAGTGCTGGAAGGCTAACGGAGT
GGACTTCTTCCTGCAAAAAGGCCGGTTGGCGACTTTTCGGAAGGAGGAGA
CGGTGGTGGTGGGCCTGAACTGTGGCTTCGGGATGGCGGGGCACCACATC
ATCACAAACCCATCTCCCAAGCAGGCGCTACCGTCAAATGAAGAGGCCGG
TTGGCGACTTTTCGGAAGGAGGAGACGGTGGTGGTGGGCCTGAACTGTGG
CTTCGGGATGGCGGGGCACCACATCATCACAAACCCATCTCCCAAGCAGG
CGCTACCGTCAAATGAAGTCCTGTGGAAATGGCTCCCCACGCTGTACTTT
TTCGCGGCGCTCGACTTGCCCCTCATGATGACGGCCTCCTCCGTGCCAGT
CCTGTGGAAATGGCTCCCCACGCTGTACTTTTTCGCGGCGCTCGACTTGC
CCCTCATGATGACGGCCTCCTCCGTGCCAGATGTGAGCACGGCTAGATTG
ATGTTGCAGTACGTTGTCGGGACATACGAGGTGGTACGCATCCACCCATC
ACCGGTACCGTTCGAGAGCACAGTCCCGGGGGACCAGATGTGAGCACGGC
TAGATTGATGTTGCAGTACGTTGTCGGGACATACGAGGTGGTACGCATCC
ACCCATCACCGGTACCGTTCGAGAGCACAGTCCCGGGGGACCAGGTCGTG
CAGGCGAACAGCCACTGCATCTTAGTCCGAGGACAGCGACCGGGCTTCCA
TTTCTCCGTGCTGGTGGATCCCACTGTAGGTGAGCGAGTCGTGCAGGCGA
ACAGCCACTGCATCTTAGTCCGAGGACAGCGACCGGGCTTCCATTTCTCC
GTGCTGGTGGATCCCACTGTAGGTGAGCGA
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